{"id":"https://openalex.org/W2901123082","doi":"https://doi.org/10.1186/s12859-018-2452-3","title":"PCRdrive: the largest qPCR assay archive to date and endless potential for lab workflow revitalization","display_name":"PCRdrive: the largest qPCR assay archive to date and endless potential for lab workflow revitalization","publication_year":2018,"publication_date":"2018-11-22","ids":{"openalex":"https://openalex.org/W2901123082","doi":"https://doi.org/10.1186/s12859-018-2452-3","mag":"2901123082","pmid":"https://pubmed.ncbi.nlm.nih.gov/30466398"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2452-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2452-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2452-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2452-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102263799","display_name":"Florian B\u00fcrger","orcid":"https://orcid.org/0009-0007-3394-7574"},"institutions":[{"id":"https://openalex.org/I4210116773","display_name":"Institute for Bee Research","ror":"https://ror.org/01j818n92","country_code":"DE","type":"facility","lineage":["https://openalex.org/I39343248","https://openalex.org/I4210116773"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Florian Burger","raw_affiliation_strings":["OakLabs GmbH, Neuendorfstr. 16B, Hennigsdorf, 16761, Germany","OakLabs GmbH, Hennigsdorf, Germany"],"affiliations":[{"raw_affiliation_string":"OakLabs GmbH, Neuendorfstr. 16B, Hennigsdorf, 16761, Germany","institution_ids":["https://openalex.org/I4210116773"]},{"raw_affiliation_string":"OakLabs GmbH, Hennigsdorf, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016460572","display_name":"Michele Angioni","orcid":null},"institutions":[{"id":"https://openalex.org/I4210116773","display_name":"Institute for Bee Research","ror":"https://ror.org/01j818n92","country_code":"DE","type":"facility","lineage":["https://openalex.org/I39343248","https://openalex.org/I4210116773"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michele Angioni","raw_affiliation_strings":["OakLabs GmbH, Neuendorfstr. 16B, Hennigsdorf, 16761, Germany","OakLabs GmbH, Hennigsdorf, Germany"],"affiliations":[{"raw_affiliation_string":"OakLabs GmbH, Neuendorfstr. 16B, Hennigsdorf, 16761, Germany","institution_ids":["https://openalex.org/I4210116773"]},{"raw_affiliation_string":"OakLabs GmbH, Hennigsdorf, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089708524","display_name":"Gianluca Russo","orcid":"https://orcid.org/0000-0003-2698-9470"},"institutions":[{"id":"https://openalex.org/I4210116773","display_name":"Institute for Bee Research","ror":"https://ror.org/01j818n92","country_code":"DE","type":"facility","lineage":["https://openalex.org/I39343248","https://openalex.org/I4210116773"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gianluca Russo","raw_affiliation_strings":["OakLabs GmbH, Neuendorfstr. 16B, Hennigsdorf, 16761, Germany","OakLabs GmbH, Hennigsdorf, Germany"],"affiliations":[{"raw_affiliation_string":"OakLabs GmbH, Neuendorfstr. 16B, Hennigsdorf, 16761, Germany","institution_ids":["https://openalex.org/I4210116773"]},{"raw_affiliation_string":"OakLabs GmbH, Hennigsdorf, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068281866","display_name":"Martina Schad","orcid":"https://orcid.org/0000-0002-1747-0493"},"institutions":[{"id":"https://openalex.org/I4210116773","display_name":"Institute for Bee Research","ror":"https://ror.org/01j818n92","country_code":"DE","type":"facility","lineage":["https://openalex.org/I39343248","https://openalex.org/I4210116773"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martina Schad","raw_affiliation_strings":["OakLabs GmbH, Neuendorfstr. 16B, Hennigsdorf, 16761, Germany","OakLabs GmbH, Hennigsdorf, Germany"],"affiliations":[{"raw_affiliation_string":"OakLabs GmbH, Neuendorfstr. 16B, Hennigsdorf, 16761, Germany","institution_ids":["https://openalex.org/I4210116773"]},{"raw_affiliation_string":"OakLabs GmbH, Hennigsdorf, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043891961","display_name":"Jim Kallarackal","orcid":"https://orcid.org/0000-0002-4949-0800"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Jim Kallarackal","raw_affiliation_strings":["OakLabs GmbH, Neuendorfstr. 16B, Hennigsdorf, 16761, Germany. kallarackal@oak-labs.com","OakLabs GmbH, Hennigsdorf, Germany"],"affiliations":[{"raw_affiliation_string":"OakLabs GmbH, Neuendorfstr. 16B, Hennigsdorf, 16761, Germany. kallarackal@oak-labs.com","institution_ids":[]},{"raw_affiliation_string":"OakLabs GmbH, Hennigsdorf, Germany","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5043891961"],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.11088161,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"19","issue":"1","first_page":"447","last_page":"447"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.745356559753418},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.575913667678833},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4726630449295044},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3998430073261261},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3662607669830322},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.35467469692230225},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.339846670627594},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3290061354637146},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.20349276065826416},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1794469654560089},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08276897668838501},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.06395724415779114}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.745356559753418},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.575913667678833},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4726630449295044},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3998430073261261},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3662607669830322},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.35467469692230225},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.339846670627594},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3290061354637146},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.20349276065826416},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1794469654560089},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08276897668838501},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.06395724415779114}],"mesh":[{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060888","descriptor_name":"Real-Time Polymerase Chain Reaction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060888","descriptor_name":"Real-Time Polymerase Chain Reaction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060888","descriptor_name":"Real-Time Polymerase Chain Reaction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-018-2452-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2452-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2452-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30466398","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30466398","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:2a1caa53af514073980fc4fdd352e792","is_oa":true,"landing_page_url":"https://doaj.org/article/2a1caa53af514073980fc4fdd352e792","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-10 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5220583","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6249872","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2452-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2452-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2452-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2901123082.pdf","grobid_xml":"https://content.openalex.org/works/W2901123082.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1505153618","https://openalex.org/W1510244790","https://openalex.org/W1947267113","https://openalex.org/W2021838563","https://openalex.org/W2028799613","https://openalex.org/W2032019813","https://openalex.org/W2086561953","https://openalex.org/W2096760544","https://openalex.org/W2097107919","https://openalex.org/W2100303227","https://openalex.org/W2107282968","https://openalex.org/W2110022696","https://openalex.org/W2118615056","https://openalex.org/W2120724457","https://openalex.org/W2141320958","https://openalex.org/W2142678478","https://openalex.org/W2162098634","https://openalex.org/W2397902456","https://openalex.org/W2528685246","https://openalex.org/W2750526208","https://openalex.org/W2768784295"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W188202134","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W4255934811","https://openalex.org/W2465382974","https://openalex.org/W2010229520"],"abstract_inverted_index":{"High":[0],"quality":[1],"ready":[2],"to":[3,68,72,83],"use":[4,65],"qPCR":[5],"assays":[6,26,41],"for":[7,79],"gene":[8],"expression":[9],"analysis":[10],"are":[11],"provided":[12],"within":[13,48],"the":[14,49,66,73,87,110],"online":[15],"platform":[16],"PCRdrive.":[17],"A":[18],"built-in":[19],"primer":[20],"designer":[21],"enables":[22],"easy":[23,78],"generation":[24],"of":[25,39,56,94],"which":[27,59,75],"is":[28,60,90],"not":[29],"supported":[30],"by":[31],"any":[32],"other":[33,80],"tool.":[34],"The":[35],"wet":[36],"lab":[37],"optimisation":[38],"new":[40],"can":[42],"be":[43],"transparently":[44],"documented":[45],"and":[46,85,98,106],"shared":[47],"team.":[50,113],"PCRdrive":[51,89],"also":[52],"contains":[53],"an":[54],"archive":[55,67],"public":[57],"PCRs":[58],"updated":[61],"regularly.":[62],"Users":[63],"may":[64],"publish":[69],"their":[70],"PCR":[71,95],"community":[74],"makes":[76],"it":[77],"researchers":[81],"worldwide":[82],"reproduce":[84],"validate":[86],"PCR.":[88],"a":[91],"growing":[92],"network":[93],"users,":[96],"simplifying":[97],"streamlining":[99],"research":[100],"through":[101],"its":[102],"useful":[103],"existing":[104],"features":[105],"continuous":[107],"developments":[108],"from":[109],"active":[111],"development":[112]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
