{"id":"https://openalex.org/W2902201297","doi":"https://doi.org/10.1186/s12859-018-2446-1","title":"Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics","display_name":"Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics","publication_year":2018,"publication_date":"2018-11-28","ids":{"openalex":"https://openalex.org/W2902201297","doi":"https://doi.org/10.1186/s12859-018-2446-1","mag":"2902201297","pmid":"https://pubmed.ncbi.nlm.nih.gov/30486782"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2446-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2446-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2446-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2446-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007832378","display_name":"Shakuntala Baichoo","orcid":"https://orcid.org/0000-0002-9335-1939"},"institutions":[{"id":"https://openalex.org/I69072986","display_name":"University of Mauritius","ror":"https://ror.org/05cyprz33","country_code":"MU","type":"education","lineage":["https://openalex.org/I69072986"]}],"countries":["MU"],"is_corresponding":true,"raw_author_name":"Shakuntala Baichoo","raw_affiliation_strings":["Department of Digital Technologies, University of Mauritius, Reduit, Mauritius. shakunb@uom.ac.mu","Department of Digital Technologies, University of Mauritius, Reduit, Mauritius"],"affiliations":[{"raw_affiliation_string":"Department of Digital Technologies, University of Mauritius, Reduit, Mauritius. shakunb@uom.ac.mu","institution_ids":["https://openalex.org/I69072986"]},{"raw_affiliation_string":"Department of Digital Technologies, University of Mauritius, Reduit, Mauritius","institution_ids":["https://openalex.org/I69072986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059118201","display_name":"Yassine Souilmi","orcid":"https://orcid.org/0000-0001-7543-4864"},"institutions":[{"id":"https://openalex.org/I5681781","display_name":"The University of Adelaide","ror":"https://ror.org/00892tw58","country_code":"AU","type":"education","lineage":["https://openalex.org/I5681781"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Yassine Souilmi","raw_affiliation_strings":["Australian Centre for Ancient DNA, University of Adelaide, Adelaide, South Australia, Australia"],"affiliations":[{"raw_affiliation_string":"Australian Centre for Ancient DNA, University of Adelaide, Adelaide, South Australia, Australia","institution_ids":["https://openalex.org/I5681781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017042855","display_name":"Sumir Panji","orcid":"https://orcid.org/0000-0003-0447-0598"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Sumir Panji","raw_affiliation_strings":["Computational Biology Division, Department of Integrative Medical Biosciences, IDM, University of Cape Town, Cape Town, South Africa"],"affiliations":[{"raw_affiliation_string":"Computational Biology Division, Department of Integrative Medical Biosciences, IDM, University of Cape Town, Cape Town, South Africa","institution_ids":["https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007711928","display_name":"Gerrit Botha","orcid":"https://orcid.org/0000-0001-7499-3760"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Gerrit Botha","raw_affiliation_strings":["Computational Biology Division, Department of Integrative Medical Biosciences, IDM, University of Cape Town, Cape Town, South Africa"],"affiliations":[{"raw_affiliation_string":"Computational Biology Division, Department of Integrative Medical Biosciences, IDM, University of Cape Town, Cape Town, South Africa","institution_ids":["https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033056936","display_name":"Ayton Meintjes","orcid":"https://orcid.org/0000-0001-5076-2941"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Ayton Meintjes","raw_affiliation_strings":["Computational Biology Division, Department of Integrative Medical Biosciences, IDM, University of Cape Town, Cape Town, South Africa"],"affiliations":[{"raw_affiliation_string":"Computational Biology Division, Department of Integrative Medical Biosciences, IDM, University of Cape Town, Cape Town, South Africa","institution_ids":["https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010060892","display_name":"Scott Hazelhurst","orcid":"https://orcid.org/0000-0002-0581-149X"},"institutions":[{"id":"https://openalex.org/I192619145","display_name":"University of the Witwatersrand","ror":"https://ror.org/03rp50x72","country_code":"ZA","type":"education","lineage":["https://openalex.org/I192619145"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Scott Hazelhurst","raw_affiliation_strings":["School of Electrical & Information Engineering, University of the Witwatersrand, Johannesburg, South Africa","Sydney Brenner Institute for Molecular Bioscience, University of the Witwatersrand, Johannesburg, South Africa"],"affiliations":[{"raw_affiliation_string":"School of Electrical & Information Engineering, University of the Witwatersrand, Johannesburg, South Africa","institution_ids":["https://openalex.org/I192619145"]},{"raw_affiliation_string":"Sydney Brenner Institute for Molecular Bioscience, University of the Witwatersrand, Johannesburg, South Africa","institution_ids":["https://openalex.org/I192619145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061355884","display_name":"Hocine Bendou","orcid":"https://orcid.org/0000-0001-5371-6107"},"institutions":[{"id":"https://openalex.org/I869660684","display_name":"University of the Western Cape","ror":"https://ror.org/00h2vm590","country_code":"ZA","type":"education","lineage":["https://openalex.org/I869660684"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Hocine Bendou","raw_affiliation_strings":["Natural Sciences, University of the Western Cape, Bellville, Cape Town, South Africa","South African National Bioinformatics Institute, University of the Western Cape, Bellville, Cape Town, South Africa"],"affiliations":[{"raw_affiliation_string":"Natural Sciences, University of the Western Cape, Bellville, Cape Town, South Africa","institution_ids":["https://openalex.org/I869660684"]},{"raw_affiliation_string":"South African National Bioinformatics Institute, University of the Western Cape, Bellville, Cape Town, South Africa","institution_ids":["https://openalex.org/I869660684"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041248198","display_name":"Eugene de Beste","orcid":null},"institutions":[{"id":"https://openalex.org/I869660684","display_name":"University of the Western Cape","ror":"https://ror.org/00h2vm590","country_code":"ZA","type":"education","lineage":["https://openalex.org/I869660684"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Eugene de Beste","raw_affiliation_strings":["Natural Sciences, University of the Western Cape, Bellville, Cape Town, South Africa","South African National Bioinformatics Institute, University of the Western Cape, Bellville, Cape Town, South Africa"],"affiliations":[{"raw_affiliation_string":"Natural Sciences, University of the Western Cape, Bellville, Cape Town, South Africa","institution_ids":["https://openalex.org/I869660684"]},{"raw_affiliation_string":"South African National Bioinformatics Institute, University of the Western Cape, Bellville, Cape Town, South Africa","institution_ids":["https://openalex.org/I869660684"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031391004","display_name":"Phelelani Thokozani Mpangase","orcid":"https://orcid.org/0000-0001-8280-8940"},"institutions":[{"id":"https://openalex.org/I192619145","display_name":"University of the Witwatersrand","ror":"https://ror.org/03rp50x72","country_code":"ZA","type":"education","lineage":["https://openalex.org/I192619145"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Phelelani T. Mpangase","raw_affiliation_strings":["Sydney Brenner Institute for Molecular Bioscience, University of the Witwatersrand, Johannesburg, South Africa"],"affiliations":[{"raw_affiliation_string":"Sydney Brenner Institute for Molecular Bioscience, University of the Witwatersrand, Johannesburg, South Africa","institution_ids":["https://openalex.org/I192619145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112889316","display_name":"Oussema Souiai","orcid":null},"institutions":[{"id":"https://openalex.org/I108714496","display_name":"Tunis University","ror":"https://ror.org/02q1spa57","country_code":"TN","type":"education","lineage":["https://openalex.org/I108714496"]},{"id":"https://openalex.org/I4210142087","display_name":"Institut Pasteur de Tunis","ror":"https://ror.org/04pwyer06","country_code":"TN","type":"facility","lineage":["https://openalex.org/I4210142087"]},{"id":"https://openalex.org/I63596082","display_name":"Tunis El Manar University","ror":"https://ror.org/029cgt552","country_code":"TN","type":"education","lineage":["https://openalex.org/I63596082"]}],"countries":["TN"],"is_corresponding":false,"raw_author_name":"Oussema Souiai","raw_affiliation_strings":["Institut Pasteur De Tunis, University Tunis El manar, Tunis, Tunisia","Institut Superieur des Technologies Medicales de Tunis, University Tunis El manar, Tunis, Tunisia"],"affiliations":[{"raw_affiliation_string":"Institut Pasteur De Tunis, University Tunis El manar, Tunis, Tunisia","institution_ids":["https://openalex.org/I4210142087","https://openalex.org/I108714496"]},{"raw_affiliation_string":"Institut Superieur des Technologies Medicales de Tunis, University Tunis El manar, Tunis, Tunisia","institution_ids":["https://openalex.org/I63596082"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049952229","display_name":"Mustafa Alghali","orcid":null},"institutions":[{"id":"https://openalex.org/I150406212","display_name":"University of Khartoum","ror":"https://ror.org/02jbayz55","country_code":"SD","type":"education","lineage":["https://openalex.org/I150406212"]}],"countries":["SD"],"is_corresponding":false,"raw_author_name":"Mustafa Alghali","raw_affiliation_strings":["Center for Bioinformatics & Systems Biology, Faculty of Science, University of Khartoum, Khartoum, Sudan","Department of Electrical & Electronic Engineering, Faculty of Engineering, University of Khartoum, Khartoum, Sudan"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics & Systems Biology, Faculty of Science, University of Khartoum, Khartoum, Sudan","institution_ids":["https://openalex.org/I150406212"]},{"raw_affiliation_string":"Department of Electrical & Electronic Engineering, Faculty of Engineering, University of Khartoum, Khartoum, Sudan","institution_ids":["https://openalex.org/I150406212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019688131","display_name":"Long Yi","orcid":null},"institutions":[{"id":"https://openalex.org/I869660684","display_name":"University of the Western Cape","ror":"https://ror.org/00h2vm590","country_code":"ZA","type":"education","lineage":["https://openalex.org/I869660684"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Long Yi","raw_affiliation_strings":["Natural Sciences, University of the Western Cape, Bellville, Cape Town, South Africa","South African National Bioinformatics Institute, University of the Western Cape, Bellville, Cape Town, South Africa"],"affiliations":[{"raw_affiliation_string":"Natural Sciences, University of the Western Cape, Bellville, Cape Town, South Africa","institution_ids":["https://openalex.org/I869660684"]},{"raw_affiliation_string":"South African National Bioinformatics Institute, University of the Western Cape, Bellville, Cape Town, South Africa","institution_ids":["https://openalex.org/I869660684"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040984959","display_name":"Brian D. O\u2019Connor","orcid":"https://orcid.org/0000-0002-7681-6415"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian D. O\u2019Connor","raw_affiliation_strings":["Genomics Institute, University of California, Santa Cruz, California, USA"],"affiliations":[{"raw_affiliation_string":"Genomics Institute, University of California, Santa Cruz, California, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020288899","display_name":"Michael R. Crusoe","orcid":"https://orcid.org/0000-0002-2961-9670"},"institutions":[{"id":"https://openalex.org/I2801522054","display_name":"Freedom House","ror":"https://ror.org/021f23q27","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2801522054"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Crusoe","raw_affiliation_strings":["Common Workflow Language project, Software Freedom Conservancy, New York City, NY, USA"],"affiliations":[{"raw_affiliation_string":"Common Workflow Language project, Software Freedom Conservancy, New York City, NY, USA","institution_ids":["https://openalex.org/I2801522054"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029013684","display_name":"Don Armstrong","orcid":"https://orcid.org/0000-0002-4904-638X"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Don Armstrong","raw_affiliation_strings":["Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA"],"affiliations":[{"raw_affiliation_string":"Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079517255","display_name":"Shaun Aron","orcid":"https://orcid.org/0000-0001-6200-0485"},"institutions":[{"id":"https://openalex.org/I192619145","display_name":"University of the Witwatersrand","ror":"https://ror.org/03rp50x72","country_code":"ZA","type":"education","lineage":["https://openalex.org/I192619145"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Shaun Aron","raw_affiliation_strings":["Sydney Brenner Institute for Molecular Bioscience, University of the Witwatersrand, Johannesburg, South Africa"],"affiliations":[{"raw_affiliation_string":"Sydney Brenner Institute for Molecular Bioscience, University of the Witwatersrand, Johannesburg, South Africa","institution_ids":["https://openalex.org/I192619145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004332656","display_name":"Fourie Joubert","orcid":null},"institutions":[{"id":"https://openalex.org/I69552723","display_name":"University of Pretoria","ror":"https://ror.org/00g0p6g84","country_code":"ZA","type":"education","lineage":["https://openalex.org/I69552723"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Fourie Joubert","raw_affiliation_strings":["Centre for Bioinformatics and Computational Biology, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa"],"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics and Computational Biology, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa","institution_ids":["https://openalex.org/I69552723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060876073","display_name":"Azza E. Ahmed","orcid":"https://orcid.org/0000-0002-1358-8371"},"institutions":[{"id":"https://openalex.org/I150406212","display_name":"University of Khartoum","ror":"https://ror.org/02jbayz55","country_code":"SD","type":"education","lineage":["https://openalex.org/I150406212"]}],"countries":["SD"],"is_corresponding":false,"raw_author_name":"Azza E. Ahmed","raw_affiliation_strings":["Center for Bioinformatics & Systems Biology, Faculty of Science, University of Khartoum, Khartoum, Sudan","Department of Electrical & Electronic Engineering, Faculty of Engineering, University of Khartoum, Khartoum, Sudan"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics & Systems Biology, Faculty of Science, University of Khartoum, Khartoum, Sudan","institution_ids":["https://openalex.org/I150406212"]},{"raw_affiliation_string":"Department of Electrical & Electronic Engineering, Faculty of Engineering, University of Khartoum, Khartoum, Sudan","institution_ids":["https://openalex.org/I150406212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081386063","display_name":"Mamana Mbiyavanga","orcid":"https://orcid.org/0000-0003-3431-895X"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Mamana Mbiyavanga","raw_affiliation_strings":["Computational Biology Division, Department of Integrative Medical Biosciences, IDM, University of Cape Town, Cape Town, South Africa"],"affiliations":[{"raw_affiliation_string":"Computational Biology Division, Department of Integrative Medical Biosciences, IDM, University of Cape Town, Cape Town, South Africa","institution_ids":["https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101990918","display_name":"Peter Van Heusden","orcid":"https://orcid.org/0000-0001-6553-5274"},"institutions":[{"id":"https://openalex.org/I869660684","display_name":"University of the Western Cape","ror":"https://ror.org/00h2vm590","country_code":"ZA","type":"education","lineage":["https://openalex.org/I869660684"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Peter van Heusden","raw_affiliation_strings":["Natural Sciences, University of the Western Cape, Bellville, Cape Town, South Africa","South African National Bioinformatics Institute, University of the Western Cape, Bellville, Cape Town, South Africa"],"affiliations":[{"raw_affiliation_string":"Natural Sciences, University of the Western Cape, Bellville, Cape Town, South Africa","institution_ids":["https://openalex.org/I869660684"]},{"raw_affiliation_string":"South African National Bioinformatics Institute, University of the Western Cape, Bellville, Cape Town, South Africa","institution_ids":["https://openalex.org/I869660684"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002378093","display_name":"Lerato E Magosi","orcid":"https://orcid.org/0000-0002-3388-9892"},"institutions":[{"id":"https://openalex.org/I1336263701","display_name":"Centre for Human Genetics","ror":"https://ror.org/01rjnta51","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1336263701","https://openalex.org/I40120149"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Lerato E. Magosi","raw_affiliation_strings":["Radcliffe Department of Medicine, University of Oxford, Oxford, UK","Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Radcliffe Department of Medicine, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I1336263701","https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017649539","display_name":"Jennie Zermeno","orcid":null},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I4210135837","display_name":"National Center for Supercomputing Applications","ror":"https://ror.org/03r10zj06","country_code":"US","type":"facility","lineage":["https://openalex.org/I157725225","https://openalex.org/I4210135837"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennie Zermeno","raw_affiliation_strings":["National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA","institution_ids":["https://openalex.org/I4210135837","https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032264771","display_name":"Liudmila S. Mainzer","orcid":"https://orcid.org/0000-0001-7121-0214"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I4210135837","display_name":"National Center for Supercomputing Applications","ror":"https://ror.org/03r10zj06","country_code":"US","type":"facility","lineage":["https://openalex.org/I157725225","https://openalex.org/I4210135837"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liudmila Sergeevna Mainzer","raw_affiliation_strings":["Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA","National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA"],"affiliations":[{"raw_affiliation_string":"Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA","institution_ids":["https://openalex.org/I4210135837","https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034537948","display_name":"Faisal M. Fadlelmola","orcid":"https://orcid.org/0000-0001-8351-264X"},"institutions":[{"id":"https://openalex.org/I150406212","display_name":"University of Khartoum","ror":"https://ror.org/02jbayz55","country_code":"SD","type":"education","lineage":["https://openalex.org/I150406212"]}],"countries":["SD"],"is_corresponding":false,"raw_author_name":"Faisal M. Fadlelmola","raw_affiliation_strings":["Center for Bioinformatics & Systems Biology, Faculty of Science, University of Khartoum, Khartoum, Sudan"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics & Systems Biology, Faculty of Science, University of Khartoum, Khartoum, Sudan","institution_ids":["https://openalex.org/I150406212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074106693","display_name":"C. Victor Jongeneel","orcid":"https://orcid.org/0000-0002-3922-1906"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. Victor Jongeneel","raw_affiliation_strings":["Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA"],"affiliations":[{"raw_affiliation_string":"Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080377820","display_name":"Nicola Mulder","orcid":"https://orcid.org/0000-0003-4905-0941"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Nicola Mulder","raw_affiliation_strings":["Computational Biology Division, Department of Integrative Medical Biosciences, IDM, University of Cape Town, Cape Town, South Africa"],"affiliations":[{"raw_affiliation_string":"Computational Biology Division, Department of Integrative Medical Biosciences, IDM, University of Cape Town, Cape Town, South Africa","institution_ids":["https://openalex.org/I157614274"]}]}],"institutions":[],"countries_distinct_count":7,"institutions_distinct_count":26,"corresponding_author_ids":["https://openalex.org/A5007832378"],"corresponding_institution_ids":["https://openalex.org/I69072986"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":20.2212,"has_fulltext":true,"cited_by_count":57,"citation_normalized_percentile":{"value":0.99161396,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"19","issue":"1","first_page":"457","last_page":"457"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9817000031471252,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8580954074859619},{"id":"https://openalex.org/keywords/software-portability","display_name":"Software portability","score":0.5564664006233215},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5479068160057068},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5253861546516418},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4908054769039154},{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.4200904965400696},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.21809378266334534},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.21732684969902039},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15271049737930298}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8580954074859619},{"id":"https://openalex.org/C63000827","wikidata":"https://www.wikidata.org/wiki/Q3080428","display_name":"Software portability","level":2,"score":0.5564664006233215},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5479068160057068},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5253861546516418},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4908054769039154},{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.4200904965400696},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.21809378266334534},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.21732684969902039},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15271049737930298},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000349","descriptor_name":"Africa","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000349","descriptor_name":"Africa","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000349","descriptor_name":"Africa","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1186/s12859-018-2446-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2446-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2446-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30486782","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30486782","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:pasteur-01988269v1","is_oa":true,"landing_page_url":"https://riip.hal.science/pasteur-01988269","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2018, 19 (457), ⟨10.1186/s12859-018-2446-1⟩","raw_type":"Journal articles"},{"id":"pmh:oai:digital.library.adelaide.edu.au:2440/119178","is_oa":true,"landing_page_url":"http://hdl.handle.net/2440/119178","pdf_url":null,"source":{"id":"https://openalex.org/S4306401835","display_name":"Adelaide Research & Scholarship (AR&S) (University of Adelaide)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5681781","host_organization_name":"The University of Adelaide","host_organization_lineage":["https://openalex.org/I5681781"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://dx.doi.org/10.1186/s12859-018-2446-1","raw_type":"Journal article"},{"id":"pmh:oai:doaj.org/article:b9386fe4dced4b938ad6c01dba73df71","is_oa":true,"landing_page_url":"https://doaj.org/article/b9386fe4dced4b938ad6c01dba73df71","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-13 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5245711","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6264621","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:localhost:11427/29136","is_oa":false,"landing_page_url":"http://hdl.handle.net/11427/29136","pdf_url":null,"source":{"id":"https://openalex.org/S4306402129","display_name":"Open University of Cape Town (University of Cape Town)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157614274","host_organization_name":"University of Cape Town","host_organization_lineage":["https://openalex.org/I157614274"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:repository.up.ac.za:2263/71795","is_oa":true,"landing_page_url":"http://hdl.handle.net/2263/71795","pdf_url":null,"source":{"id":"https://openalex.org/S4306401870","display_name":"UpSpace Institutional Repository (University of Pretoria)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I69552723","host_organization_name":"University of Pretoria","host_organization_lineage":["https://openalex.org/I69552723"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:repository.uwc.ac.za:10566/4764","is_oa":false,"landing_page_url":"http://hdl.handle.net/10566/4764","pdf_url":null,"source":{"id":"https://openalex.org/S4306400180","display_name":"UWC Research Repository (University of the Western Cape)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I869660684","host_organization_name":"University of the Western Cape","host_organization_lineage":["https://openalex.org/I869660684"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2446-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2446-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2446-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6000000238418579,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G4858522503","display_name":null,"funder_award_id":"U41HG006941","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2902201297.pdf","grobid_xml":"https://content.openalex.org/works/W2902201297.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1487895014","https://openalex.org/W1878939331","https://openalex.org/W1919257374","https://openalex.org/W1978759257","https://openalex.org/W1986908904","https://openalex.org/W1992436001","https://openalex.org/W2002732332","https://openalex.org/W2013434113","https://openalex.org/W2036318837","https://openalex.org/W2038733937","https://openalex.org/W2051643755","https://openalex.org/W2056279562","https://openalex.org/W2059492928","https://openalex.org/W2066827579","https://openalex.org/W2092590432","https://openalex.org/W2095680943","https://openalex.org/W2106578986","https://openalex.org/W2119180969","https://openalex.org/W2119818111","https://openalex.org/W2125846492","https://openalex.org/W2131271579","https://openalex.org/W2136482257","https://openalex.org/W2154866190","https://openalex.org/W2168133698","https://openalex.org/W2188414616","https://openalex.org/W2310259903","https://openalex.org/W2346143774","https://openalex.org/W2407425445","https://openalex.org/W2491960814","https://openalex.org/W2519885531","https://openalex.org/W2539403003","https://openalex.org/W2557419261","https://openalex.org/W2565191020","https://openalex.org/W2573094502","https://openalex.org/W2605897695","https://openalex.org/W2762888391","https://openalex.org/W3102869072","https://openalex.org/W6628956856"],"related_works":["https://openalex.org/W2156564520","https://openalex.org/W4307843054","https://openalex.org/W2104570606","https://openalex.org/W4210430020","https://openalex.org/W4250611210","https://openalex.org/W4248160505","https://openalex.org/W2112118427","https://openalex.org/W4205247356","https://openalex.org/W2464717012","https://openalex.org/W4390761624"],"abstract_inverted_index":{"The":[0,36,69],"H3ABioNet":[1,37,70],"workflows":[2,38,52,71],"have":[3],"been":[4],"implemented":[5],"in":[6,48],"view":[7],"of":[8,11,20,29,90],"offering":[9],"ease":[10],"use":[12,62],"for":[13,57,65],"the":[14,30,41,87],"end":[15],"user":[16],"and":[17,22,45,63,77,83,92],"high":[18],"levels":[19],"reproducibility":[21],"portability,":[23],"all":[24],"while":[25],"following":[26],"modern":[27],"state":[28],"art":[31],"bioinformatics":[32,75],"data":[33],"processing":[34],"protocols.":[35],"will":[39,72],"service":[40],"H3Africa":[42,91],"consortium":[43],"projects":[44],"are":[46,53],"currently":[47],"use.":[49],"All":[50],"four":[51],"also":[54],"publicly":[55],"available":[56],"research":[58,80],"scientists":[59],"worldwide":[60],"to":[61,85],"adapt":[64],"their":[66],"respective":[67],"needs.":[68],"help":[73],"develop":[74],"capacity":[76],"assist":[78],"genomics":[79],"within":[81],"Africa":[82],"serve":[84],"increase":[86],"scientific":[88],"output":[89],"its":[93],"Pan-African":[94],"Bioinformatics":[95],"Network.":[96]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":17},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":5}],"updated_date":"2026-04-05T06:14:27.290980","created_date":"2025-10-10T00:00:00"}