{"id":"https://openalex.org/W2900539462","doi":"https://doi.org/10.1186/s12859-018-2427-4","title":"knnAUC: an open-source R package for detecting nonlinear dependence between one continuous variable and one binary variable","display_name":"knnAUC: an open-source R package for detecting nonlinear dependence between one continuous variable and one binary variable","publication_year":2018,"publication_date":"2018-11-22","ids":{"openalex":"https://openalex.org/W2900539462","doi":"https://doi.org/10.1186/s12859-018-2427-4","mag":"2900539462","pmid":"https://pubmed.ncbi.nlm.nih.gov/30466390"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2427-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2427-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2427-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2427-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100421284","display_name":"Yi Li","orcid":"https://orcid.org/0000-0001-6286-9340"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Li","raw_affiliation_strings":["Human Phenome Institute, Fudan University, Shanghai, China","Ministry of Education Key Laboratory of Contemporary Anthropology, Department of Anthropology and Human Genetics, School of Life Sciences, Fudan University, Shanghai, China","Six Industrial Research Institute, Fudan University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Phenome Institute, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Contemporary Anthropology, Department of Anthropology and Human Genetics, School of Life Sciences, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Six Industrial Research Institute, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100455492","display_name":"Xiaoyu Liu","orcid":"https://orcid.org/0000-0001-9888-5836"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyu Liu","raw_affiliation_strings":["Human Phenome Institute, Fudan University, Shanghai, China","Ministry of Education Key Laboratory of Contemporary Anthropology, Department of Anthropology and Human Genetics, School of Life Sciences, Fudan University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Phenome Institute, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Contemporary Anthropology, Department of Anthropology and Human Genetics, School of Life Sciences, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011910809","display_name":"Yanyun Ma","orcid":"https://orcid.org/0000-0001-9541-1854"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanyun Ma","raw_affiliation_strings":["Human Phenome Institute, Fudan University, Shanghai, China","Ministry of Education Key Laboratory of Contemporary Anthropology, Department of Anthropology and Human Genetics, School of Life Sciences, Fudan University, Shanghai, China","Six Industrial Research Institute, Fudan University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Phenome Institute, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Contemporary Anthropology, Department of Anthropology and Human Genetics, School of Life Sciences, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Six Industrial Research Institute, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100365030","display_name":"Yi Wang","orcid":"https://orcid.org/0000-0003-3739-4472"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Wang","raw_affiliation_strings":["Human Phenome Institute, Fudan University, Shanghai, China","Ministry of Education Key Laboratory of Contemporary Anthropology, Department of Anthropology and Human Genetics, School of Life Sciences, Fudan University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Phenome Institute, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Contemporary Anthropology, Department of Anthropology and Human Genetics, School of Life Sciences, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059450767","display_name":"Weichen Zhou","orcid":"https://orcid.org/0000-0003-4755-1072"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4391768242","display_name":"State Key Laboratory of Genetic Engineering","ror":"https://ror.org/01n3rg866","country_code":null,"type":"facility","lineage":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Weichen Zhou","raw_affiliation_strings":["Department of Computational Medicine & Bioinformatics, University of Michigan, Ann Arbor, MI, USA","State Key Laboratory of Genetic Engineering, Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Medicine & Bioinformatics, University of Michigan, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"State Key Laboratory of Genetic Engineering, Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100750428","display_name":"Meng Hao","orcid":"https://orcid.org/0000-0002-5543-5373"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meng Hao","raw_affiliation_strings":["Human Phenome Institute, Fudan University, Shanghai, China","Ministry of Education Key Laboratory of Contemporary Anthropology, Department of Anthropology and Human Genetics, School of Life Sciences, Fudan University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Phenome Institute, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Contemporary Anthropology, Department of Anthropology and Human Genetics, School of Life Sciences, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090384031","display_name":"Zhenghong Yuan","orcid":"https://orcid.org/0000-0003-0268-4891"},"institutions":[{"id":"https://openalex.org/I4210106542","display_name":"Shanghai Public Health Clinical Center","ror":"https://ror.org/01nnwyz44","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210106542"]},{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenghong Yuan","raw_affiliation_strings":["Key Laboratory of Medical Molecular Virology of MOE/MOH, Shanghai Medical School, Fudan University, Shanghai, China","Shanghai Public Health Clinical Center, Fudan University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Medical Molecular Virology of MOE/MOH, Shanghai Medical School, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Shanghai Public Health Clinical Center, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I4210106542"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100454141","display_name":"Jie Liu","orcid":"https://orcid.org/0000-0002-7638-187X"},"institutions":[{"id":"https://openalex.org/I4210159575","display_name":"Huashan Hospital","ror":"https://ror.org/05201qm87","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210159575"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Liu","raw_affiliation_strings":["Department of Digestive Diseases of Huashan Hospital, Collaborative Innovation Center for Genetics and Development, Fudan University, Shanghai, China","Key Laboratory of Medical Molecular Virology of MOE/MOH, Shanghai Medical School, Fudan University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Digestive Diseases of Huashan Hospital, Collaborative Innovation Center for Genetics and Development, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I4210159575","https://openalex.org/I24943067"]},{"raw_affiliation_string":"Key Laboratory of Medical Molecular Virology of MOE/MOH, Shanghai Medical School, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I133868755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101865395","display_name":"Momiao Xiong","orcid":null},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Momiao Xiong","raw_affiliation_strings":["Human Genetics Center, School of Public Health, University of Texas Houston Health Sciences Center, Houston, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Genetics Center, School of Public Health, University of Texas Houston Health Sciences Center, Houston, TX, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059073252","display_name":"Yin Yao Shugart","orcid":"https://orcid.org/0000-0001-7487-4294"},"institutions":[{"id":"https://openalex.org/I4210158500","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210158500"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yin Yao Shugart","raw_affiliation_strings":["Unit on Statistical Genomics, Division of Intramural Division Programs, National Institute of Mental Health, National Institutes of Health, Bethesda, MD, USA. yinyao21043@gmail.com","Unit on Statistical Genomics, Division of Intramural Division Programs, National Institute of Mental Health, National Institutes of Health, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit on Statistical Genomics, Division of Intramural Division Programs, National Institute of Mental Health, National Institutes of Health, Bethesda, MD, USA. yinyao21043@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Unit on Statistical Genomics, Division of Intramural Division Programs, National Institute of Mental Health, National Institutes of Health, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210158500","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051169949","display_name":"Jiucun Wang","orcid":"https://orcid.org/0000-0003-2765-0620"},"institutions":[{"id":"https://openalex.org/I4391768242","display_name":"State Key Laboratory of Genetic Engineering","ror":"https://ror.org/01n3rg866","country_code":null,"type":"facility","lineage":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiucun Wang","raw_affiliation_strings":["Human Phenome Institute, Fudan University, Shanghai, China. jcwang@fudan.edu.cn","Six Industrial Research Institute, Fudan University, Shanghai, China. jcwang@fudan.edu.cn","State Key Laboratory of Genetic Engineering, Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University, Shanghai, China. jcwang@fudan.edu.cn","State Key Laboratory of Genetic Engineering, Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Phenome Institute, Fudan University, Shanghai, China. jcwang@fudan.edu.cn","institution_ids":[]},{"raw_affiliation_string":"Six Industrial Research Institute, Fudan University, Shanghai, China. jcwang@fudan.edu.cn","institution_ids":[]},{"raw_affiliation_string":"State Key Laboratory of Genetic Engineering, Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University, Shanghai, China. jcwang@fudan.edu.cn","institution_ids":[]},{"raw_affiliation_string":"State Key Laboratory of Genetic Engineering, Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100364769","display_name":"Jin Li","orcid":"https://orcid.org/0000-0001-9201-2321"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4391768242","display_name":"State Key Laboratory of Genetic Engineering","ror":"https://ror.org/01n3rg866","country_code":null,"type":"facility","lineage":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Jin","raw_affiliation_strings":["Human Phenome Institute, Fudan University, Shanghai, China. lijin@fudan.edu.cn","Six Industrial Research Institute, Fudan University, Shanghai, China. lijin@fudan.edu.cn","State Key Laboratory of Genetic Engineering, Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University, Shanghai, China. lijin@fudan.edu.cn","State Key Laboratory of Genetic Engineering, Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Phenome Institute, Fudan University, Shanghai, China. lijin@fudan.edu.cn","institution_ids":[]},{"raw_affiliation_string":"Six Industrial Research Institute, Fudan University, Shanghai, China. lijin@fudan.edu.cn","institution_ids":[]},{"raw_affiliation_string":"State Key Laboratory of Genetic Engineering, Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University, Shanghai, China. lijin@fudan.edu.cn","institution_ids":[]},{"raw_affiliation_string":"State Key Laboratory of Genetic Engineering, Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5059073252"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210158500"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.8954,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.94827806,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"19","issue":"1","first_page":"448","last_page":"448"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13398","display_name":"Data Analysis with R","score":0.24950000643730164,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13398","display_name":"Data Analysis with R","score":0.24950000643730164,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.0551999993622303,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10136","display_name":"Statistical Methods and Inference","score":0.047200001776218414,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/estimator","display_name":"Estimator","score":0.7243248224258423},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5504905581474304},{"id":"https://openalex.org/keywords/binary-number","display_name":"Binary number","score":0.5215049386024475},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5203068256378174},{"id":"https://openalex.org/keywords/variable","display_name":"Variable (mathematics)","score":0.4750618636608124},{"id":"https://openalex.org/keywords/receiver-operating-characteristic","display_name":"Receiver operating characteristic","score":0.4646797776222229},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.458607017993927},{"id":"https://openalex.org/keywords/statistical-hypothesis-testing","display_name":"Statistical hypothesis testing","score":0.4476975202560425},{"id":"https://openalex.org/keywords/type-i-and-type-ii-errors","display_name":"Type I and type II errors","score":0.437698632478714},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4190980792045593},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3442615270614624},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.34345632791519165}],"concepts":[{"id":"https://openalex.org/C185429906","wikidata":"https://www.wikidata.org/wiki/Q1130160","display_name":"Estimator","level":2,"score":0.7243248224258423},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5504905581474304},{"id":"https://openalex.org/C48372109","wikidata":"https://www.wikidata.org/wiki/Q3913","display_name":"Binary number","level":2,"score":0.5215049386024475},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5203068256378174},{"id":"https://openalex.org/C182365436","wikidata":"https://www.wikidata.org/wiki/Q50701","display_name":"Variable (mathematics)","level":2,"score":0.4750618636608124},{"id":"https://openalex.org/C58471807","wikidata":"https://www.wikidata.org/wiki/Q327120","display_name":"Receiver operating characteristic","level":2,"score":0.4646797776222229},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.458607017993927},{"id":"https://openalex.org/C87007009","wikidata":"https://www.wikidata.org/wiki/Q210832","display_name":"Statistical hypothesis testing","level":2,"score":0.4476975202560425},{"id":"https://openalex.org/C40696583","wikidata":"https://www.wikidata.org/wiki/Q989120","display_name":"Type I and type II errors","level":2,"score":0.437698632478714},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4190980792045593},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3442615270614624},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.34345632791519165},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-018-2427-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2427-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2427-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30466390","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30466390","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:deepblue.lib.umich.edu:2027.42/146514","is_oa":false,"landing_page_url":"http://hdl.handle.net/2027.42/146514","pdf_url":null,"source":{"id":"https://openalex.org/S4306400393","display_name":"Deep Blue (University of Michigan)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I27837315","host_organization_name":"University of Michigan","host_organization_lineage":["https://openalex.org/I27837315"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:1002694f0f94455595d5ebdd1fb698e7","is_oa":true,"landing_page_url":"https://doaj.org/article/1002694f0f94455595d5ebdd1fb698e7","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-12 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5220529","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6249767","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2427-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2427-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2427-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.4099999964237213,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G1474490597","display_name":null,"funder_award_id":"111 Project","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1977681778","display_name":null,"funder_award_id":"B13016","funder_id":"https://openalex.org/F4320321851","funder_display_name":"Fudan University"},{"id":"https://openalex.org/G2439765078","display_name":null,"funder_award_id":"B13016","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2840024999","display_name":null,"funder_award_id":"2014CB541801","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3295749733","display_name":null,"funder_award_id":"2017SHZDZX01","funder_id":"https://openalex.org/F4320321851","funder_display_name":"Fudan University"},{"id":"https://openalex.org/G3548295844","display_name":null,"funder_award_id":"2017SHZDZX01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4173259801","display_name":null,"funder_award_id":"2015FY111700","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4188185419","display_name":null,"funder_award_id":"2017SHZDZX01","funder_id":"https://openalex.org/F4320327912","funder_display_name":"Higher Education Discipline Innovation Project"},{"id":"https://openalex.org/G4188890512","display_name":null,"funder_award_id":"B13016","funder_id":"https://openalex.org/F4320327912","funder_display_name":"Higher Education Discipline Innovation Project"},{"id":"https://openalex.org/G4738731904","display_name":null,"funder_award_id":"2015FY111700","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5265584476","display_name":null,"funder_award_id":"31330038, 31521003","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5638753585","display_name":null,"funder_award_id":"2015FY111700","funder_id":"https://openalex.org/F4320321851","funder_display_name":"Fudan University"},{"id":"https://openalex.org/G6044760167","display_name":null,"funder_award_id":"2017SHZDZX01","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7040185658","display_name":null,"funder_award_id":"31330038","funder_id":"https://openalex.org/F4320321851","funder_display_name":"Fudan University"},{"id":"https://openalex.org/G7100667194","display_name":null,"funder_award_id":"31521003","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7271263264","display_name":null,"funder_award_id":"2017SHZDZX01","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G731963113","display_name":null,"funder_award_id":"31521003","funder_id":"https://openalex.org/F4320321851","funder_display_name":"Fudan University"},{"id":"https://openalex.org/G803596128","display_name":null,"funder_award_id":"31330038","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8042391104","display_name":null,"funder_award_id":"B13016","funder_id":"https://openalex.org/F4320321106","funder_display_name":"Ministry of Education of the People's Republic of China"},{"id":"https://openalex.org/G8251349200","display_name":null,"funder_award_id":"2015FY111700","funder_id":"https://openalex.org/F4320309618","funder_display_name":"Ministry of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309618","display_name":"Ministry of Science and Technology","ror":"https://ror.org/02b207r52"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321106","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934"},{"id":"https://openalex.org/F4320321851","display_name":"Fudan University","ror":"https://ror.org/013q1eq08"},{"id":"https://openalex.org/F4320322724","display_name":"Ministry of Education, India","ror":"https://ror.org/048xjjh50"},{"id":"https://openalex.org/F4320327912","display_name":"Higher Education Discipline Innovation Project","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2900539462.pdf","grobid_xml":"https://content.openalex.org/works/W2900539462.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W12404931","https://openalex.org/W16367539","https://openalex.org/W127120502","https://openalex.org/W1558918611","https://openalex.org/W1623768750","https://openalex.org/W1638081485","https://openalex.org/W1672197616","https://openalex.org/W1727682642","https://openalex.org/W1852980093","https://openalex.org/W1871301427","https://openalex.org/W1968729274","https://openalex.org/W1974259057","https://openalex.org/W1984436011","https://openalex.org/W1985258161","https://openalex.org/W1998357223","https://openalex.org/W2002583936","https://openalex.org/W2011287130","https://openalex.org/W2018031929","https://openalex.org/W2020700628","https://openalex.org/W2022281028","https://openalex.org/W2023205960","https://openalex.org/W2027989791","https://openalex.org/W2029694543","https://openalex.org/W2044626217","https://openalex.org/W2060758175","https://openalex.org/W2080391692","https://openalex.org/W2083137262","https://openalex.org/W2083252561","https://openalex.org/W2089204183","https://openalex.org/W2107031757","https://openalex.org/W2116493552","https://openalex.org/W2119821739","https://openalex.org/W2123447397","https://openalex.org/W2131327355","https://openalex.org/W2133990480","https://openalex.org/W2145979309","https://openalex.org/W2147710851","https://openalex.org/W2157825442","https://openalex.org/W2158443703","https://openalex.org/W2158774304","https://openalex.org/W2165700458","https://openalex.org/W2166121267","https://openalex.org/W2335012284","https://openalex.org/W2519563140","https://openalex.org/W2561675875","https://openalex.org/W2600403006","https://openalex.org/W2610222308","https://openalex.org/W2620006923","https://openalex.org/W2725300428","https://openalex.org/W2727523617","https://openalex.org/W2761314975","https://openalex.org/W2903950532","https://openalex.org/W2911964244","https://openalex.org/W3105285334","https://openalex.org/W3106063097","https://openalex.org/W4242841269","https://openalex.org/W4300870773","https://openalex.org/W6600297719"],"related_works":["https://openalex.org/W4290692481","https://openalex.org/W154531455","https://openalex.org/W3003558595","https://openalex.org/W1962532029","https://openalex.org/W2020541461","https://openalex.org/W4385586894","https://openalex.org/W2122180890","https://openalex.org/W4255580322","https://openalex.org/W4361270669","https://openalex.org/W4249473446"],"abstract_inverted_index":{"BACKGROUND:":[0],"Testing":[1],"the":[2,10,55,64,75,82,99,119,123,133,142,158,166],"dependence":[3,28,201],"of":[4,9,104,108,113,125,144],"two":[5],"variables":[6,38],"is":[7,58,136,193],"one":[8,30,35,203,207],"fundamental":[11],"tasks":[12],"in":[13,212],"statistics.":[14],"In":[15,63],"this":[16,46],"work,":[17],"we":[18,68,117,152],"developed":[19],"an":[20,194],"open-source":[21],"R":[22,56,196],"package":[23,57,197],"(knnAUC)":[24],"for":[25],"detecting":[26],"nonlinear":[27],"between":[29,160,202],"continuous":[31,204],"variable":[32,205,210],"X":[33],"and":[34,77,89,130,164,170,176,183,206],"binary":[36,208],"dependent":[37,209],"Y":[39],"(0":[40],"or":[41],"1).":[42],"RESULTS:":[43],"We":[44,189],"addressed":[45],"problem":[47],"by":[48],"using":[49,173],"knnAUC":[50,65,145,192],"(k-nearest":[51],"neighbors":[52,94],"AUC":[53,120,134],"test,":[54],"available":[59],"at":[60],"https://sourceforge.net/projects/knnauc/":[61],").":[62],"software":[66],"framework,":[67],"first":[69],"resampled":[70],"a":[71,92],"dataset":[72,79],"to":[73,81,87,97,147,156,198],"get":[74,98],"training":[76],"testing":[78,114],"according":[80],"sample":[83],"ratio":[84],"(from":[85],"0":[86],"1),":[88],"then":[90],"constructed":[91],"k-nearest":[93],"algorithm":[95],"classifier":[96],"yhat":[100],"estimator":[101,129,135],"(the":[102,110],"probability":[103],"y":[105],"=":[106],"1)":[107],"testy":[109],"true":[111],"label":[112],"dataset).":[115],"Finally,":[116],"calculated":[118],"(area":[121],"under":[122],"curve":[124],"receiver":[126],"operating":[127],"characteristic)":[128],"tested":[131],"whether":[132],"greater":[137],"than":[138],"0.5.":[139],"To":[140],"evaluate":[141],"advantages":[143],"compared":[146,165],"seven":[148],"other":[149],"popular":[150],"methods,":[151],"performed":[153],"extensive":[154],"simulations":[155],"explore":[157],"relationships":[159],"eight":[161],"different":[162],"methods":[163],"false":[167],"positive":[168],"rates":[169],"statistical":[171],"power":[172],"both":[174],"simulated":[175],"real":[177],"datasets":[178,182],"(Chronic":[179],"hepatitis":[180],"B":[181],"kidney":[184],"cancer":[185],"RNA-seq":[186],"datasets).":[187],"CONCLUSIONS:":[188],"concluded":[190],"that":[191],"efficient":[195],"test":[199],"non-linear":[200],"especially":[211],"computational":[213],"biology":[214],"area.":[215]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":18},{"year":2020,"cited_by_count":5}],"updated_date":"2026-05-04T08:30:34.212998","created_date":"2025-10-10T00:00:00"}
