{"id":"https://openalex.org/W2949294873","doi":"https://doi.org/10.1186/s12859-018-2425-6","title":"Tigmint: correcting assembly errors using linked reads from large molecules","display_name":"Tigmint: correcting assembly errors using linked reads from large molecules","publication_year":2018,"publication_date":"2018-10-26","ids":{"openalex":"https://openalex.org/W2949294873","doi":"https://doi.org/10.1186/s12859-018-2425-6","mag":"2949294873","pmid":"https://pubmed.ncbi.nlm.nih.gov/30367597"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2425-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2425-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2425-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2425-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028264773","display_name":"Shaun D. Jackman","orcid":"https://orcid.org/0000-0002-9275-5966"},"institutions":[{"id":"https://openalex.org/I4210132220","display_name":"Genome British Columbia","ror":"https://ror.org/03gne5057","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210132220"]},{"id":"https://openalex.org/I4210133112","display_name":"Canada's Michael Smith Genome Sciences Centre","ror":"https://ror.org/0333j0897","country_code":"CA","type":"other","lineage":["https://openalex.org/I4210133112"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Shaun D. Jackman","raw_affiliation_strings":["BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada. sjackman@bcgsc.ca","BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada"],"affiliations":[{"raw_affiliation_string":"BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada. sjackman@bcgsc.ca","institution_ids":["https://openalex.org/I4210133112","https://openalex.org/I4210132220"]},{"raw_affiliation_string":"BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036530894","display_name":"Lauren Coombe","orcid":"https://orcid.org/0000-0002-7518-2326"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lauren Coombe","raw_affiliation_strings":["BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada"],"affiliations":[{"raw_affiliation_string":"BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076845048","display_name":"Justin Chu","orcid":"https://orcid.org/0000-0003-0549-4997"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Justin Chu","raw_affiliation_strings":["BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada"],"affiliations":[{"raw_affiliation_string":"BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102829017","display_name":"Ren\u00e9 L. Warren","orcid":"https://orcid.org/0000-0002-9890-2293"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rene L. Warren","raw_affiliation_strings":["BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada"],"affiliations":[{"raw_affiliation_string":"BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077505259","display_name":"Benjamin P. Vandervalk","orcid":"https://orcid.org/0000-0002-3082-3476"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Benjamin P. Vandervalk","raw_affiliation_strings":["BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada"],"affiliations":[{"raw_affiliation_string":"BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005044389","display_name":"Sarah Yeo","orcid":"https://orcid.org/0000-0001-5814-4187"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sarah Yeo","raw_affiliation_strings":["BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada"],"affiliations":[{"raw_affiliation_string":"BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103213479","display_name":"Zhuyi Xue","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhuyi Xue","raw_affiliation_strings":["BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada"],"affiliations":[{"raw_affiliation_string":"BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111786891","display_name":"Hamid Mohamadi","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hamid Mohamadi","raw_affiliation_strings":["BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada"],"affiliations":[{"raw_affiliation_string":"BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064304551","display_name":"J\u00f6erg Bohlmann","orcid":"https://orcid.org/0000-0002-3637-7956"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210133112","display_name":"Canada's Michael Smith Genome Sciences Centre","ror":"https://ror.org/0333j0897","country_code":"CA","type":"other","lineage":["https://openalex.org/I4210133112"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Joerg Bohlmann","raw_affiliation_strings":["University of British Columbia, Michael Smith Laboratories, Vancouver, V6T 1Z4, BC, Canada"],"affiliations":[{"raw_affiliation_string":"University of British Columbia, Michael Smith Laboratories, Vancouver, V6T 1Z4, BC, Canada","institution_ids":["https://openalex.org/I4210133112","https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100728059","display_name":"Steven J.M. Jones","orcid":"https://orcid.org/0000-0003-3394-2208"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Steven J.M. Jones","raw_affiliation_strings":["BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada"],"affiliations":[{"raw_affiliation_string":"BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017539699","display_name":"\u0130nan\u00e7 Birol","orcid":"https://orcid.org/0000-0003-0950-7839"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Inanc Birol","raw_affiliation_strings":["BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada"],"affiliations":[{"raw_affiliation_string":"BC Cancer Genome Sciences Centre, Vancouver, V5Z 4S6, BC, Canada","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5028264773"],"corresponding_institution_ids":["https://openalex.org/I4210132220","https://openalex.org/I4210133112"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":5.5851,"has_fulltext":true,"cited_by_count":135,"citation_normalized_percentile":{"value":0.96973329,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"19","issue":"1","first_page":"393","last_page":"393"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.787707507610321},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7168217897415161},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6632511615753174},{"id":"https://openalex.org/keywords/hybrid-genome-assembly","display_name":"Hybrid genome assembly","score":0.6458603739738464},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.5769125819206238},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.5741872787475586},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.47728100419044495},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"Whole genome sequencing","score":0.4749234616756439},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4632725715637207},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4595209062099457},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4530399441719055},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4199659526348114},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4016279876232147},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.21996161341667175},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18716764450073242}],"concepts":[{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.787707507610321},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7168217897415161},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6632511615753174},{"id":"https://openalex.org/C113425843","wikidata":"https://www.wikidata.org/wiki/Q5953213","display_name":"Hybrid genome assembly","level":5,"score":0.6458603739738464},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.5769125819206238},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.5741872787475586},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.47728100419044495},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.4749234616756439},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4632725715637207},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4595209062099457},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4530399441719055},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4199659526348114},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4016279876232147},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.21996161341667175},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18716764450073242},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D002877","descriptor_name":"Chromosomes, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002877","descriptor_name":"Chromosomes, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002877","descriptor_name":"Chromosomes, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-018-2425-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2425-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2425-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30367597","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30367597","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:circle.library.ubc.ca:2429/67714","is_oa":true,"landing_page_url":"http://hdl.handle.net/2429/67714","pdf_url":null,"source":{"id":"https://openalex.org/S4377196297","display_name":"cIRcle (University of British Columbia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I141945490","host_organization_name":"University of British Columbia","host_organization_lineage":["https://openalex.org/I141945490"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:dccb9dd54a6741eab57266cecd973b35","is_oa":true,"landing_page_url":"https://doaj.org/article/dccb9dd54a6741eab57266cecd973b35","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-10 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5160395","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6204047","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6204047","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6204047","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2425-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2425-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2425-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2165548363","display_name":null,"funder_award_id":"Canada","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G405560503","display_name":null,"funder_award_id":"Genome BC","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G8284766523","display_name":null,"funder_award_id":"(NSERC)","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320319973","display_name":"Genome British Columbia","ror":"https://ror.org/03gne5057"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2949294873.pdf","grobid_xml":"https://content.openalex.org/works/W2949294873.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W576031931","https://openalex.org/W1912672559","https://openalex.org/W1982855075","https://openalex.org/W2008826985","https://openalex.org/W2095680943","https://openalex.org/W2102619694","https://openalex.org/W2107772251","https://openalex.org/W2108234281","https://openalex.org/W2118522801","https://openalex.org/W2158804744","https://openalex.org/W2167757586","https://openalex.org/W2264578395","https://openalex.org/W2322902521","https://openalex.org/W2345920351","https://openalex.org/W2428569935","https://openalex.org/W2484698392","https://openalex.org/W2538143681","https://openalex.org/W2582315481","https://openalex.org/W2583479769","https://openalex.org/W2589379462","https://openalex.org/W2607669908","https://openalex.org/W2756340082","https://openalex.org/W2765745983","https://openalex.org/W2767132092","https://openalex.org/W2782547666","https://openalex.org/W2789843538","https://openalex.org/W2949059287","https://openalex.org/W2949436170","https://openalex.org/W2950569192","https://openalex.org/W2950682063","https://openalex.org/W2951440740","https://openalex.org/W2952870794"],"related_works":["https://openalex.org/W2127651281","https://openalex.org/W3167837387","https://openalex.org/W2993223466","https://openalex.org/W2949198880","https://openalex.org/W2944010518","https://openalex.org/W2157888653","https://openalex.org/W2131813051","https://openalex.org/W54719527","https://openalex.org/W2089480001","https://openalex.org/W4210830088"],"abstract_inverted_index":{"Scaffolding":[0],"an":[1,23],"assembly":[2,12,24,42],"that":[3,13,25,43],"has":[4,26],"been":[5,28],"corrected":[6],"with":[7,35,61],"Tigmint":[8],"yields":[9],"a":[10,39,46,56],"final":[11],"is":[14],"both":[15,45],"more":[16,20],"correct":[17],"and":[18],"substantially":[19],"contiguous":[21],"than":[22],"not":[27,58],"corrected.":[29],"Using":[30],"single-molecule":[31],"sequencing":[32],"in":[33],"combination":[34],"linked":[36],"reads":[37],"enables":[38],"genome":[40],"sequence":[41,48],"achieves":[44],"high":[47,53],"contiguity":[49],"as":[50,52],"well":[51],"scaffold":[54],"contiguity,":[55],"feat":[57],"currently":[59],"achievable":[60],"either":[62],"technology":[63],"alone.":[64]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":28},{"year":2022,"cited_by_count":22},{"year":2021,"cited_by_count":35},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}