{"id":"https://openalex.org/W2885383552","doi":"https://doi.org/10.1186/s12859-018-2307-y","title":"PIPEBAR and OverlapPER: tools for a fast and accurate DNA barcoding analysis and paired-end assembly","display_name":"PIPEBAR and OverlapPER: tools for a fast and accurate DNA barcoding analysis and paired-end assembly","publication_year":2018,"publication_date":"2018-08-08","ids":{"openalex":"https://openalex.org/W2885383552","doi":"https://doi.org/10.1186/s12859-018-2307-y","mag":"2885383552","pmid":"https://pubmed.ncbi.nlm.nih.gov/30089465"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2307-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2307-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2307-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2307-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072711119","display_name":"Renato Oliveira","orcid":"https://orcid.org/0000-0002-0111-8209"},"institutions":[{"id":"https://openalex.org/I4210161302","display_name":"Vale Technological Institute","ror":"https://ror.org/05wnasr61","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210161302"]},{"id":"https://openalex.org/I59606676","display_name":"Universidade Federal do Par\u00e1","ror":"https://ror.org/03q9sr818","country_code":"BR","type":"education","lineage":["https://openalex.org/I59606676"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Renato Renison Moreira Oliveira","raw_affiliation_strings":["Computer Science Graduate Program (PPGCC), UFPA (Par\u00e1-PA), Bel\u00e9m, Par\u00e1, Brazil. renato.renison@gmail.com","Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil. renato.renison@gmail.com","Laboratory of Bioinformatics and High-performance Computing (LaBioCAD), UFPA (Par\u00e1-PA), Bel\u00e9m, Par\u00e1, Brazil. renato.renison@gmail.com","Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil"],"affiliations":[{"raw_affiliation_string":"Computer Science Graduate Program (PPGCC), UFPA (Par\u00e1-PA), Bel\u00e9m, Par\u00e1, Brazil. renato.renison@gmail.com","institution_ids":["https://openalex.org/I59606676"]},{"raw_affiliation_string":"Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil. renato.renison@gmail.com","institution_ids":["https://openalex.org/I4210161302"]},{"raw_affiliation_string":"Laboratory of Bioinformatics and High-performance Computing (LaBioCAD), UFPA (Par\u00e1-PA), Bel\u00e9m, Par\u00e1, Brazil. renato.renison@gmail.com","institution_ids":["https://openalex.org/I59606676"]},{"raw_affiliation_string":"Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil","institution_ids":["https://openalex.org/I4210161302"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059781509","display_name":"Gisele Lopes Nunes","orcid":"https://orcid.org/0000-0003-3994-5135"},"institutions":[{"id":"https://openalex.org/I4210161302","display_name":"Vale Technological Institute","ror":"https://ror.org/05wnasr61","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210161302"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Gisele Lopes Nunes","raw_affiliation_strings":["Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil","institution_ids":["https://openalex.org/I4210161302"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059183805","display_name":"Talv\u00e2ne G. L. Lima","orcid":null},"institutions":[{"id":"https://openalex.org/I4210161302","display_name":"Vale Technological Institute","ror":"https://ror.org/05wnasr61","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210161302"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Talv\u00e2ne Glauber Lopes de Lima","raw_affiliation_strings":["Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil","institution_ids":["https://openalex.org/I4210161302"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048496084","display_name":"Guilherme Oliveira","orcid":"https://orcid.org/0000-0003-0054-3438"},"institutions":[{"id":"https://openalex.org/I211891151","display_name":"Universidade do Estado do Par\u00e1","ror":"https://ror.org/042r36z33","country_code":"BR","type":"education","lineage":["https://openalex.org/I211891151"]},{"id":"https://openalex.org/I4210161302","display_name":"Vale Technological Institute","ror":"https://ror.org/05wnasr61","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210161302"]},{"id":"https://openalex.org/I59606676","display_name":"Universidade Federal do Par\u00e1","ror":"https://ror.org/03q9sr818","country_code":"BR","type":"education","lineage":["https://openalex.org/I59606676"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Guilherme Oliveira","raw_affiliation_strings":["Genetics Graduate Program, UFPA (Par\u00e1-PA), Bel\u00e9m, Par\u00e1, Brazil","Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil"],"affiliations":[{"raw_affiliation_string":"Genetics Graduate Program, UFPA (Par\u00e1-PA), Bel\u00e9m, Par\u00e1, Brazil","institution_ids":["https://openalex.org/I59606676","https://openalex.org/I211891151"]},{"raw_affiliation_string":"Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil","institution_ids":["https://openalex.org/I4210161302"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000457683","display_name":"Ronnie Alves","orcid":"https://orcid.org/0000-0003-4139-0562"},"institutions":[{"id":"https://openalex.org/I4210161302","display_name":"Vale Technological Institute","ror":"https://ror.org/05wnasr61","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210161302"]},{"id":"https://openalex.org/I59606676","display_name":"Universidade Federal do Par\u00e1","ror":"https://ror.org/03q9sr818","country_code":"BR","type":"education","lineage":["https://openalex.org/I59606676"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Ronnie Alves","raw_affiliation_strings":["Computer Science Graduate Program (PPGCC), UFPA (Par\u00e1-PA), Bel\u00e9m, Par\u00e1, Brazil. Ronnie.alves@itv.org","Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil. Ronnie.alves@itv.org","Laboratory of Bioinformatics and High-performance Computing (LaBioCAD), UFPA (Par\u00e1-PA), Bel\u00e9m, Par\u00e1, Brazil. Ronnie.alves@itv.org","Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil"],"affiliations":[{"raw_affiliation_string":"Computer Science Graduate Program (PPGCC), UFPA (Par\u00e1-PA), Bel\u00e9m, Par\u00e1, Brazil. Ronnie.alves@itv.org","institution_ids":["https://openalex.org/I59606676"]},{"raw_affiliation_string":"Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil. Ronnie.alves@itv.org","institution_ids":["https://openalex.org/I4210161302"]},{"raw_affiliation_string":"Laboratory of Bioinformatics and High-performance Computing (LaBioCAD), UFPA (Par\u00e1-PA), Bel\u00e9m, Par\u00e1, Brazil. Ronnie.alves@itv.org","institution_ids":["https://openalex.org/I59606676"]},{"raw_affiliation_string":"Instituto Tecnol\u00f3gico Vale, Bel\u00e9m, Par\u00e1, Brazil","institution_ids":["https://openalex.org/I4210161302"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5072711119"],"corresponding_institution_ids":["https://openalex.org/I4210161302","https://openalex.org/I59606676"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.9281,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.74443771,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"19","issue":"1","first_page":"297","last_page":"297"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/barcode","display_name":"Barcode","score":0.8479520082473755},{"id":"https://openalex.org/keywords/dna-barcoding","display_name":"DNA barcoding","score":0.6627052426338196},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.613998293876648},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6102656722068787},{"id":"https://openalex.org/keywords/indel","display_name":"Indel","score":0.5851159691810608},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5611426830291748},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4936293363571167},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.49030187726020813},{"id":"https://openalex.org/keywords/sanger-sequencing","display_name":"Sanger sequencing","score":0.44875675439834595},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4444934129714966},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.4386858642101288},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4242013990879059},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.4201478660106659},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4192768335342407},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41322624683380127},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4110938012599945},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.18776816129684448},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16790425777435303},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13621145486831665},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1204058825969696},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.0842297375202179}],"concepts":[{"id":"https://openalex.org/C2776841711","wikidata":"https://www.wikidata.org/wiki/Q856","display_name":"Barcode","level":2,"score":0.8479520082473755},{"id":"https://openalex.org/C141732470","wikidata":"https://www.wikidata.org/wiki/Q1154642","display_name":"DNA barcoding","level":2,"score":0.6627052426338196},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.613998293876648},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6102656722068787},{"id":"https://openalex.org/C119054055","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"Indel","level":5,"score":0.5851159691810608},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5611426830291748},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4936293363571167},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.49030187726020813},{"id":"https://openalex.org/C76818968","wikidata":"https://www.wikidata.org/wiki/Q181940","display_name":"Sanger sequencing","level":4,"score":0.44875675439834595},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4444934129714966},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.4386858642101288},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4242013990879059},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.4201478660106659},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4192768335342407},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41322624683380127},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4110938012599945},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.18776816129684448},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16790425777435303},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13621145486831665},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1204058825969696},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0842297375202179},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016368","descriptor_name":"Frameshift Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016368","descriptor_name":"Frameshift Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016368","descriptor_name":"Frameshift Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016384","descriptor_name":"Consensus Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016384","descriptor_name":"Consensus Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016384","descriptor_name":"Consensus Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018388","descriptor_name":"Codon, Terminator","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018388","descriptor_name":"Codon, Terminator","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018388","descriptor_name":"Codon, Terminator","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-018-2307-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2307-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2307-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30089465","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30089465","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:32f3aed8b8cf4b68a2a9155fd42ed5e4","is_oa":true,"landing_page_url":"https://doaj.org/article/32f3aed8b8cf4b68a2a9155fd42ed5e4","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-10 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5034651","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6083499","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2307-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2307-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2307-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.550000011920929},{"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16","score":0.4300000071525574}],"awards":[{"id":"https://openalex.org/G1429890386","display_name":null,"funder_award_id":"(CNPq","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G1943625433","display_name":null,"funder_award_id":"307479/2016-1","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3151493033","display_name":null,"funder_award_id":"2013-0","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3331681876","display_name":null,"funder_award_id":"CAPES","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3938906640","display_name":null,"funder_award_id":"(CAPES)","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G5079005330","display_name":null,"funder_award_id":"support","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G5139334624","display_name":null,"funder_award_id":"Coordena\u00e7\u00e3o","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G8070542863","display_name":null,"funder_award_id":"443270/2015-5","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G851520058","display_name":null,"funder_award_id":"fellows","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G8605298706","display_name":null,"funder_award_id":"440880/2013-0","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G963174003","display_name":null,"funder_award_id":"de Aperfei\u00e7","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"}],"funders":[{"id":"https://openalex.org/F4320316037","display_name":"Instituto Tecnol\u00f3gico Vale","ror":"https://ror.org/05wnasr61"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2885383552.pdf","grobid_xml":"https://content.openalex.org/works/W2885383552.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1971443418","https://openalex.org/W1974279211","https://openalex.org/W1996423252","https://openalex.org/W2017214689","https://openalex.org/W2021284638","https://openalex.org/W2023356179","https://openalex.org/W2039930928","https://openalex.org/W2050474297","https://openalex.org/W2071510336","https://openalex.org/W2072603644","https://openalex.org/W2096525273","https://openalex.org/W2097758022","https://openalex.org/W2099901798","https://openalex.org/W2103828958","https://openalex.org/W2106480442","https://openalex.org/W2118504484","https://openalex.org/W2121180999","https://openalex.org/W2127774996","https://openalex.org/W2128711701","https://openalex.org/W2132548846","https://openalex.org/W2136068873","https://openalex.org/W2136489776","https://openalex.org/W2142678478","https://openalex.org/W2146320430","https://openalex.org/W2152644728","https://openalex.org/W2157107905","https://openalex.org/W2157539385","https://openalex.org/W2167076445","https://openalex.org/W2272917943","https://openalex.org/W2279440129","https://openalex.org/W2335903885","https://openalex.org/W2383812421","https://openalex.org/W2588886743","https://openalex.org/W2739702018","https://openalex.org/W2765281411","https://openalex.org/W2806671706","https://openalex.org/W2949908331","https://openalex.org/W3121953277","https://openalex.org/W4245803912"],"related_works":["https://openalex.org/W2402613932","https://openalex.org/W2111456242","https://openalex.org/W4291786356","https://openalex.org/W2360712899","https://openalex.org/W2097619744","https://openalex.org/W2509660947","https://openalex.org/W2394007119","https://openalex.org/W2032317445","https://openalex.org/W2184079388","https://openalex.org/W2911724990"],"abstract_inverted_index":{"PIPEBAR":[0],"and":[1,8,16,21],"OverlapPER":[2],"run":[3],"on":[4],"most":[5],"operating":[6],"systems":[7],"are":[9],"freely":[10],"available,":[11],"along":[12],"with":[13],"supporting":[14],"code":[15],"documentation,":[17],"at":[18],"https://sourceforge.net/projects/PIPEBAR":[19],"/":[20],"https://sourceforge.net/projects/overlapper-reads":[22],"/.":[23]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":2}],"updated_date":"2026-03-31T07:56:22.981413","created_date":"2025-10-10T00:00:00"}
