{"id":"https://openalex.org/W2886729117","doi":"https://doi.org/10.1186/s12859-018-2276-1","title":"Efficient computation of motif discovery on Intel Many Integrated Core (MIC) Architecture","display_name":"Efficient computation of motif discovery on Intel Many Integrated Core (MIC) Architecture","publication_year":2018,"publication_date":"2018-08-01","ids":{"openalex":"https://openalex.org/W2886729117","doi":"https://doi.org/10.1186/s12859-018-2276-1","mag":"2886729117","pmid":"https://pubmed.ncbi.nlm.nih.gov/30367570"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2276-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2276-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2276-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2276-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108008219","display_name":"Shaoliang Peng","orcid":"https://orcid.org/0000-0002-4647-2615"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shaoliang Peng","raw_affiliation_strings":["College of Computer Science and Electronic Engineering & National Supercomputing Centre in Changsha, Hunan University, Changsha, 410082, China. pengshaoliang@nudt.edu.cn","School of Computer Science, National University of Defense Technology, Changsha, 410073, China. pengshaoliang@nudt.edu.cn","College of Computer Science and Electronic Engineering & National Supercomputing Centre in Changsha, Hunan University, Changsha, 410082, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering & National Supercomputing Centre in Changsha, Hunan University, Changsha, 410082, China. pengshaoliang@nudt.edu.cn","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"School of Computer Science, National University of Defense Technology, Changsha, 410073, China. pengshaoliang@nudt.edu.cn","institution_ids":["https://openalex.org/I170215575"]},{"raw_affiliation_string":"College of Computer Science and Electronic Engineering & National Supercomputing Centre in Changsha, Hunan University, Changsha, 410082, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079726760","display_name":"Minxia Cheng","orcid":null},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Minxia Cheng","raw_affiliation_strings":["College of Computer Science and Electronic Engineering & National Supercomputing Centre in Changsha, Hunan University, Changsha, 410082, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering & National Supercomputing Centre in Changsha, Hunan University, Changsha, 410082, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100432847","display_name":"Kai\u2010Wen Huang","orcid":"https://orcid.org/0000-0001-6375-8714"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kaiwen Huang","raw_affiliation_strings":["School of Computer Science, National University of Defense Technology, Changsha, 410073, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, National University of Defense Technology, Changsha, 410073, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010752019","display_name":"Yingbo Cui","orcid":"https://orcid.org/0000-0003-4000-4957"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"YingBo Cui","raw_affiliation_strings":["School of Computer Science, National University of Defense Technology, Changsha, 410073, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, National University of Defense Technology, Changsha, 410073, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024567228","display_name":"Zhi\u2010Qiang Zhang","orcid":"https://orcid.org/0000-0003-4172-0592"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiqiang Zhang","raw_affiliation_strings":["School of Computer Science, National University of Defense Technology, Changsha, 410073, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, National University of Defense Technology, Changsha, 410073, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017623933","display_name":"Runxin Guo","orcid":"https://orcid.org/0000-0002-1203-5038"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Runxin Guo","raw_affiliation_strings":["School of Computer Science, National University of Defense Technology, Changsha, 410073, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, National University of Defense Technology, Changsha, 410073, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100419415","display_name":"Xiaoyu Zhang","orcid":"https://orcid.org/0000-0002-6617-6311"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyu Zhang","raw_affiliation_strings":["School of Computer Science, National University of Defense Technology, Changsha, 410073, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, National University of Defense Technology, Changsha, 410073, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110571359","display_name":"Shunyun Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shunyun Yang","raw_affiliation_strings":["School of Computer Science, National University of Defense Technology, Changsha, 410073, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, National University of Defense Technology, Changsha, 410073, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000688713","display_name":"Xiangke Liao","orcid":"https://orcid.org/0000-0002-6125-3330"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangke Liao","raw_affiliation_strings":["School of Computer Science, National University of Defense Technology, Changsha, 410073, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, National University of Defense Technology, Changsha, 410073, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101633465","display_name":"Yutong Lu","orcid":"https://orcid.org/0000-0001-5315-3375"},"institutions":[{"id":"https://openalex.org/I4210112812","display_name":"National Supercomputing Center in Shenzhen","ror":"https://ror.org/02291hh73","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210112812"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yutong Lu","raw_affiliation_strings":["National Supercomputer Center in Guangzhou, Guangzhou, 510275, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Supercomputer Center in Guangzhou, Guangzhou, 510275, China","institution_ids":["https://openalex.org/I4210112812"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017426085","display_name":"Quan Zou","orcid":"https://orcid.org/0000-0001-6406-1142"},"institutions":[{"id":"https://openalex.org/I132369690","display_name":"Tianjin University of Science and Technology","ror":"https://ror.org/018rbtf37","country_code":"CN","type":"education","lineage":["https://openalex.org/I132369690"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Quan Zou","raw_affiliation_strings":["School of Computer Science and Technology, Tianjin University, Tianjin, 300350, China. zouquan@nclab.net","School of Computer Science and Technology, Tianjin University, Tianjin, 300350, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Tianjin University, Tianjin, 300350, China. zouquan@nclab.net","institution_ids":["https://openalex.org/I132369690"]},{"raw_affiliation_string":"School of Computer Science and Technology, Tianjin University, Tianjin, 300350, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048137853","display_name":"Benyun Shi","orcid":"https://orcid.org/0000-0003-2734-3794"},"institutions":[{"id":"https://openalex.org/I50760025","display_name":"Hangzhou Dianzi University","ror":"https://ror.org/0576gt767","country_code":"CN","type":"education","lineage":["https://openalex.org/I50760025"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Benyun Shi","raw_affiliation_strings":["School of Cyberspace, Hangzhou Dianzi University, Hangzhou, 310018, China. benyunshi@outlook.com","School of Cyberspace, Hangzhou Dianzi University, Hangzhou, 310018, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Cyberspace, Hangzhou Dianzi University, Hangzhou, 310018, China. benyunshi@outlook.com","institution_ids":["https://openalex.org/I50760025"]},{"raw_affiliation_string":"School of Cyberspace, Hangzhou Dianzi University, Hangzhou, 310018, China","institution_ids":["https://openalex.org/I50760025"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5017426085","https://openalex.org/A5048137853","https://openalex.org/A5108008219"],"corresponding_institution_ids":["https://openalex.org/I132369690","https://openalex.org/I16609230","https://openalex.org/I170215575","https://openalex.org/I50760025"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.4118,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.59082227,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"19","issue":"S9","first_page":"282","last_page":"282"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.1931000053882599,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.1931000053882599,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.1923999935388565,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.13510000705718994,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/xeon-phi","display_name":"Xeon Phi","score":0.9064075946807861},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8360417485237122},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7195966839790344},{"id":"https://openalex.org/keywords/coprocessor","display_name":"Coprocessor","score":0.6411285996437073},{"id":"https://openalex.org/keywords/xeon","display_name":"Xeon","score":0.6039418578147888},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5799469351768494},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5493700504302979},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.5119327306747437},{"id":"https://openalex.org/keywords/multi-core-processor","display_name":"Multi-core processor","score":0.5025753974914551},{"id":"https://openalex.org/keywords/smith\u2013waterman-algorithm","display_name":"Smith\u2013Waterman algorithm","score":0.4568508267402649},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32879120111465454},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.273134708404541},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.21006518602371216},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.19800162315368652}],"concepts":[{"id":"https://openalex.org/C96972482","wikidata":"https://www.wikidata.org/wiki/Q1049168","display_name":"Xeon Phi","level":2,"score":0.9064075946807861},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8360417485237122},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7195966839790344},{"id":"https://openalex.org/C86111242","wikidata":"https://www.wikidata.org/wiki/Q859595","display_name":"Coprocessor","level":2,"score":0.6411285996437073},{"id":"https://openalex.org/C145108525","wikidata":"https://www.wikidata.org/wiki/Q656154","display_name":"Xeon","level":2,"score":0.6039418578147888},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5799469351768494},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5493700504302979},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.5119327306747437},{"id":"https://openalex.org/C78766204","wikidata":"https://www.wikidata.org/wiki/Q555032","display_name":"Multi-core processor","level":2,"score":0.5025753974914551},{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.4568508267402649},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32879120111465454},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.273134708404541},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.21006518602371216},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.19800162315368652},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-018-2276-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2276-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2276-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30367570","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30367570","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:608ffd9dab7a4d5bac7bd3d42e7a7973","is_oa":true,"landing_page_url":"https://doaj.org/article/608ffd9dab7a4d5bac7bd3d42e7a7973","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss S9, Pp 101-110 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5052130","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6101076","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2276-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2276-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2276-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.47999998927116394,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1328409166","display_name":null,"funder_award_id":"61625202","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1587116901","display_name":null,"funder_award_id":"61771331","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3414779823","display_name":null,"funder_award_id":"2016YFB0200400","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4111034471","display_name":null,"funder_award_id":"U1435222","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G512176667","display_name":"\u9762\u5411\u57ce\u5e02\u8ba1\u7b97\u7684\u534f\u4f5c\u8ba4\u77e5\u65e0\u7ebf\u7535\u7f51\u7edc\u8d44\u6e90\u4f18\u5316\u7406\u8bba\u4e0e\u5173\u952e\u6280\u672f\u7814\u7a76","funder_award_id":"61272056","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5631792370","display_name":null,"funder_award_id":"61772543","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6579822845","display_name":null,"funder_award_id":"2017YFB0202104","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8486657479","display_name":null,"funder_award_id":"2016B090918122","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2886729117.pdf","grobid_xml":"https://content.openalex.org/works/W2886729117.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W348433680","https://openalex.org/W1501286679","https://openalex.org/W1548543412","https://openalex.org/W1592870802","https://openalex.org/W1956007715","https://openalex.org/W1988888548","https://openalex.org/W2032079030","https://openalex.org/W2046880909","https://openalex.org/W2048869777","https://openalex.org/W2071116416","https://openalex.org/W2088115849","https://openalex.org/W2102924260","https://openalex.org/W2105694586","https://openalex.org/W2115979107","https://openalex.org/W2121391914","https://openalex.org/W2124201730","https://openalex.org/W2145091349","https://openalex.org/W2147461064","https://openalex.org/W2149414426","https://openalex.org/W2156486093","https://openalex.org/W2157009395","https://openalex.org/W2164814636","https://openalex.org/W2340076492","https://openalex.org/W2470414691","https://openalex.org/W2499702955","https://openalex.org/W2563322674","https://openalex.org/W2897728083","https://openalex.org/W3145994830"],"related_works":["https://openalex.org/W2213533160","https://openalex.org/W2467043670","https://openalex.org/W2085105049","https://openalex.org/W3203561460","https://openalex.org/W3009624197","https://openalex.org/W4251138667","https://openalex.org/W2682544458","https://openalex.org/W1969709731","https://openalex.org/W2022666014","https://openalex.org/W1586106326"],"abstract_inverted_index":{"BACKGROUND:":[0],"Novel":[1],"sequence":[2],"motifs":[3],"detection":[4],"is":[5],"becoming":[6],"increasingly":[7],"essential":[8],"in":[9],"computational":[10,15],"biology.":[11],"However,":[12],"the":[13,19,62,73,93,99,128],"high":[14],"cost":[16],"greatly":[17],"constrains":[18],"efficiency":[20],"of":[21,47,72,80,130],"most":[22],"motif":[23],"discovery":[24],"algorithms.":[25],"RESULTS:":[26],"In":[27],"this":[28],"paper,":[29],"we":[30],"accelerate":[31],"MEME":[32,48],"algorithm":[33],"targeted":[34],"on":[35,52,60,90,98],"Intel":[36],"Many":[37],"Integrated":[38],"Core":[39],"(MIC)":[40],"Architecture":[41],"and":[42,67,85,117,127],"present":[43],"a":[44],"parallel":[45],"implementation":[46],"called":[49],"MIC-MEME":[50,75,110],"base":[51],"hybrid":[53],"CPU/MIC":[54],"computing":[55],"framework.":[56],"Our":[57],"method":[58,66],"focuses":[59],"parallelizing":[61],"starting":[63],"point":[64],"searching":[65],"improving":[68],"iteration":[69],"updating":[70],"strategy":[71],"algorithm.":[74],"has":[76,111],"achieved":[77],"significant":[78],"speedups":[79],"26.6":[81],"for":[82,87,92],"ZOOPS":[83],"model":[84,89],"30.2":[86],"OOPS":[88],"average":[91],"overall":[94],"runtime":[95],"when":[96],"benchmarked":[97],"experimental":[100],"platform":[101],"with":[102,114,122],"two":[103],"Xeon":[104],"Phi":[105],"3120":[106],"coprocessors.":[107],"CONCLUSIONS:":[108],"Furthermore,":[109],"been":[112],"compared":[113],"state-of-arts":[115],"methods":[116],"it":[118],"shows":[119],"good":[120],"scalability":[121],"respect":[123],"to":[124],"dataset":[125],"size":[126],"number":[129],"MICs.":[131],"Source":[132],"code:":[133],"https://github.com/hkwkevin28/MIC-MEME":[134],".":[135]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":3}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
