{"id":"https://openalex.org/W2810562310","doi":"https://doi.org/10.1186/s12859-018-2250-y","title":"PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes","display_name":"PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes","publication_year":2018,"publication_date":"2018-06-27","ids":{"openalex":"https://openalex.org/W2810562310","doi":"https://doi.org/10.1186/s12859-018-2250-y","mag":"2810562310","pmid":"https://pubmed.ncbi.nlm.nih.gov/29945570"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2250-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2250-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2250-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2250-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080871519","display_name":"Thomas H. Clarke","orcid":"https://orcid.org/0000-0002-1916-1029"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Thomas H. Clarke","raw_affiliation_strings":["J. Craig Venter Institute, Rockville, MD, 20850, USA. tclarke@jcvi.org","J. Craig Venter Institute, Rockville, MD, 20850, USA"],"raw_orcid":"https://orcid.org/0000-0002-1916-1029","affiliations":[{"raw_affiliation_string":"J. Craig Venter Institute, Rockville, MD, 20850, USA. tclarke@jcvi.org","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"J. Craig Venter Institute, Rockville, MD, 20850, USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083686393","display_name":"Lauren Brinkac","orcid":"https://orcid.org/0000-0002-7549-7280"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]},{"id":"https://openalex.org/I177181097","display_name":"Durban University of Technology","ror":"https://ror.org/0303y7a51","country_code":"ZA","type":"education","lineage":["https://openalex.org/I177181097"]}],"countries":["US","ZA"],"is_corresponding":false,"raw_author_name":"Lauren M. Brinkac","raw_affiliation_strings":["Department of Biotechnology and Food Technology, Durban University of Technology, Durban, 4000, South Africa","J. Craig Venter Institute, Rockville, MD, 20850, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Food Technology, Durban University of Technology, Durban, 4000, South Africa","institution_ids":["https://openalex.org/I177181097"]},{"raw_affiliation_string":"J. Craig Venter Institute, Rockville, MD, 20850, USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073305770","display_name":"Jason Inman","orcid":"https://orcid.org/0000-0002-8544-3286"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason M. Inman","raw_affiliation_strings":["J. Craig Venter Institute, Rockville, MD, 20850, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"J. Craig Venter Institute, Rockville, MD, 20850, USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028284504","display_name":"Granger Sutton","orcid":"https://orcid.org/0000-0001-7498-8048"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Granger Sutton","raw_affiliation_strings":["J. Craig Venter Institute, Rockville, MD, 20850, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"J. Craig Venter Institute, Rockville, MD, 20850, USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064828949","display_name":"Derrick E. Fouts","orcid":"https://orcid.org/0000-0003-4323-7668"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Derrick E. Fouts","raw_affiliation_strings":["J. Craig Venter Institute, Rockville, MD, 20850, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"J. Craig Venter Institute, Rockville, MD, 20850, USA","institution_ids":["https://openalex.org/I1301553790"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5080871519"],"corresponding_institution_ids":["https://openalex.org/I1301553790"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.6496,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.68259364,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"19","issue":"1","first_page":"246","last_page":"246"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6525999903678894,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6525999903678894,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.07360000163316727,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.05249999836087227,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.711978018283844},{"id":"https://openalex.org/keywords/panacea","display_name":"Panacea (medicine)","score":0.6701438426971436},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6181975603103638},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5400124192237854},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5156437158584595},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.507733941078186},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.4285823106765747},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.41735565662384033},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3905267119407654},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3842993378639221},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.348655104637146},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.28826242685317993},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2117028534412384}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.711978018283844},{"id":"https://openalex.org/C26993612","wikidata":"https://www.wikidata.org/wiki/Q910154","display_name":"Panacea (medicine)","level":3,"score":0.6701438426971436},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6181975603103638},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5400124192237854},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5156437158584595},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.507733941078186},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.4285823106765747},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.41735565662384033},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3905267119407654},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3842993378639221},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.348655104637146},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.28826242685317993},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2117028534412384},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-018-2250-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2250-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2250-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29945570","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29945570","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:f395693462724f4b9fb7dc3f139819d5","is_oa":true,"landing_page_url":"https://doaj.org/article/f395693462724f4b9fb7dc3f139819d5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-6 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4985683","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6020400","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6020400","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6020400","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2250-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2250-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2250-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","score":0.7099999785423279,"display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G1177099277","display_name":null,"funder_award_id":"U19AI110819","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"},{"id":"https://openalex.org/G1198226865","display_name":null,"funder_award_id":"U19AI110819","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G1460674106","display_name":null,"funder_award_id":"U19AI110819","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2810562310.pdf","grobid_xml":"https://content.openalex.org/works/W2810562310.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1490161904","https://openalex.org/W1985103004","https://openalex.org/W2008856488","https://openalex.org/W2052426953","https://openalex.org/W2095877642","https://openalex.org/W2103017472","https://openalex.org/W2117207428","https://openalex.org/W2118442768","https://openalex.org/W2120187241","https://openalex.org/W2122673596","https://openalex.org/W2125119899","https://openalex.org/W2125456570","https://openalex.org/W2125607461","https://openalex.org/W2150550043","https://openalex.org/W2151007476","https://openalex.org/W2155090350","https://openalex.org/W2167188257","https://openalex.org/W2170225163","https://openalex.org/W2335901076","https://openalex.org/W2340958225","https://openalex.org/W2466387107","https://openalex.org/W2509995029","https://openalex.org/W2515695158","https://openalex.org/W2544493586","https://openalex.org/W2563724683","https://openalex.org/W2571294499","https://openalex.org/W2586169357","https://openalex.org/W2617471186","https://openalex.org/W2949102320","https://openalex.org/W2949588467","https://openalex.org/W6675471023"],"related_works":["https://openalex.org/W2073210364","https://openalex.org/W4242593755","https://openalex.org/W2123548032","https://openalex.org/W2564831469","https://openalex.org/W2002441522","https://openalex.org/W2100901739","https://openalex.org/W2801628641","https://openalex.org/W2073363395","https://openalex.org/W2889483553","https://openalex.org/W2314914385"],"abstract_inverted_index":{"BACKGROUND:":[0],"Bacterial":[1],"pan-genomes,":[2,52],"comprised":[3],"of":[4,17,29,32,108,140,142,165,170,187,197,217,231],"conserved":[5],"and":[6,41,94,120,127,137,151,158,203,214,225],"variable":[7,72,121,181],"genes":[8,128],"across":[9],"multiple":[10],"sequenced":[11],"bacterial":[12],"genomes,":[13],"allow":[14,133],"for":[15,79,134],"identification":[16,139],"genomic":[18,149],"regions":[19,122,141,216],"that":[20,113,147,220],"are":[21,48,61,129,161,221],"phylogenetically":[22],"discriminating":[23],"or":[24,75],"functionally":[25,130],"important.":[26],"Pan-genomes":[27],"consist":[28],"large":[30],"amounts":[31],"data,":[33],"which":[34,96],"can":[35,153,192],"restrict":[36],"researchers":[37,210],"ability":[38,56],"to":[39,50,57,101,117,123,132,211,226],"locate":[40],"analyze":[42],"these":[43,59,232],"regions.":[44,233],"Multiple":[45],"software":[46],"packages":[47],"available":[49],"visualize":[51],"but":[53],"currently":[54],"their":[55],"address":[58],"concerns":[60],"limited":[62],"by":[63,76,178],"using":[64],"only":[65],"pre-computed":[66],"data":[67],"sets,":[68],"prioritizing":[69],"core":[70,119],"over":[71],"gene":[73],"clusters,":[74],"not":[77],"accounting":[78],"pan-chromosome":[80,198,219],"positioning":[81],"in":[82,184],"the":[83,145,163,195,218],"viewer.":[84],"RESULTS:":[85],"We":[86],"introduce":[87],"PanACEA":[88,171,191],"(Pan-genome":[89],"Atlas":[90],"with":[91,144],"Chromosome":[92],"Explorer":[93],"Analyzer),":[95],"utilizes":[97],"locally-computed":[98],"interactive":[99,204],"web-pages":[100],"view":[102],"ordered":[103],"pan-genome":[104],"data.":[105],"It":[106,207],"consists":[107],"multi-tiered,":[109],"hierarchical":[110],"display":[111],"pages":[112],"extend":[114],"from":[115],"pan-chromosomes":[116],"both":[118],"single":[124],"genes.":[125],"Regions":[126],"annotated":[131],"rapid":[135],"searching":[136],"visual":[138,205],"interest":[143],"option":[146],"user-supplied":[148],"phylogenies":[150],"metadata":[152],"be":[154],"incorporated.":[155],"PanACEA's":[156],"memory":[157],"time":[159],"requirements":[160],"within":[162],"capacities":[164],"standard":[166],"laptops.":[167],"The":[168],"capability":[169],"as":[172],"a":[173,180],"research":[174],"tool":[175],"is":[176],"demonstrated":[177],"highlighting":[179],"region":[182],"important":[183],"differentiating":[185],"strains":[186],"Enterobacter":[188],"hormaechei.":[189],"CONCLUSIONS:":[190],"rapidly":[193],"translate":[194],"results":[196],"programs":[199],"into":[200],"an":[201],"intuitive":[202],"representation.":[206],"will":[208],"empower":[209],"visually":[212],"explore":[213],"identify":[215],"most":[222],"biologically":[223],"interesting,":[224],"obtain":[227],"publication":[228],"quality":[229],"images":[230]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
