{"id":"https://openalex.org/W2809717751","doi":"https://doi.org/10.1186/s12859-018-2244-9","title":"Plant organelle RNA editing and its specificity factors: enhancements of analyses and new database features in PREPACT 3.0","display_name":"Plant organelle RNA editing and its specificity factors: enhancements of analyses and new database features in PREPACT 3.0","publication_year":2018,"publication_date":"2018-07-03","ids":{"openalex":"https://openalex.org/W2809717751","doi":"https://doi.org/10.1186/s12859-018-2244-9","mag":"2809717751","pmid":"https://pubmed.ncbi.nlm.nih.gov/29970001"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2244-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2244-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2244-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2244-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070940051","display_name":"H. Lenz","orcid":"https://orcid.org/0000-0002-8080-0328"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Henning Lenz","raw_affiliation_strings":["IBG-2: Plant Sciences, Forschungszentrum J\u00fclich GmbH, 52425, J\u00fclich, Germany","IZMB - Institut f\u00fcr Zellul\u00e4re und Molekulare Botanik, Abteilung Molekulare Evolution, Universit\u00e4t Bonn, Kirschallee 1, 53115, Bonn, Germany","IZMB \u2013 Institut f\u00fcr Zellul\u00e4re und Molekulare Botanik, Abteilung Molekulare Evolution, Universit\u00e4t Bonn, Kirschallee 1, 53115, Bonn, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBG-2: Plant Sciences, Forschungszentrum J\u00fclich GmbH, 52425, J\u00fclich, Germany","institution_ids":["https://openalex.org/I171892758"]},{"raw_affiliation_string":"IZMB - Institut f\u00fcr Zellul\u00e4re und Molekulare Botanik, Abteilung Molekulare Evolution, Universit\u00e4t Bonn, Kirschallee 1, 53115, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"IZMB \u2013 Institut f\u00fcr Zellul\u00e4re und Molekulare Botanik, Abteilung Molekulare Evolution, Universit\u00e4t Bonn, Kirschallee 1, 53115, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016392998","display_name":"Anke Hein","orcid":null},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Anke Hein","raw_affiliation_strings":["IZMB - Institut f\u00fcr Zellul\u00e4re und Molekulare Botanik, Abteilung Molekulare Evolution, Universit\u00e4t Bonn, Kirschallee 1, 53115, Bonn, Germany","IZMB \u2013 Institut f\u00fcr Zellul\u00e4re und Molekulare Botanik, Abteilung Molekulare Evolution, Universit\u00e4t Bonn, Kirschallee 1, 53115, Bonn, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IZMB - Institut f\u00fcr Zellul\u00e4re und Molekulare Botanik, Abteilung Molekulare Evolution, Universit\u00e4t Bonn, Kirschallee 1, 53115, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"IZMB \u2013 Institut f\u00fcr Zellul\u00e4re und Molekulare Botanik, Abteilung Molekulare Evolution, Universit\u00e4t Bonn, Kirschallee 1, 53115, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023624591","display_name":"Volker Knoop","orcid":"https://orcid.org/0000-0002-8485-9423"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Volker Knoop","raw_affiliation_strings":["IZMB - Institut f\u00fcr Zellul\u00e4re und Molekulare Botanik, Abteilung Molekulare Evolution, Universit\u00e4t Bonn, Kirschallee 1, 53115, Bonn, Germany. volker.knoop@uni-bonn.de","IZMB \u2013 Institut f\u00fcr Zellul\u00e4re und Molekulare Botanik, Abteilung Molekulare Evolution, Universit\u00e4t Bonn, Kirschallee 1, 53115, Bonn, Germany"],"raw_orcid":"https://orcid.org/0000-0002-8485-9423","affiliations":[{"raw_affiliation_string":"IZMB - Institut f\u00fcr Zellul\u00e4re und Molekulare Botanik, Abteilung Molekulare Evolution, Universit\u00e4t Bonn, Kirschallee 1, 53115, Bonn, Germany. volker.knoop@uni-bonn.de","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"IZMB \u2013 Institut f\u00fcr Zellul\u00e4re und Molekulare Botanik, Abteilung Molekulare Evolution, Universit\u00e4t Bonn, Kirschallee 1, 53115, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5070940051"],"corresponding_institution_ids":["https://openalex.org/I135140700","https://openalex.org/I171892758"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.4332,"has_fulltext":true,"cited_by_count":137,"citation_normalized_percentile":{"value":0.93608398,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"19","issue":"1","first_page":"255","last_page":"255"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.8169999718666077,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.8169999718666077,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12610","display_name":"RNA regulation and disease","score":0.10869999974966049,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11626","display_name":"Metalloenzymes and iron-sulfur proteins","score":0.026000000536441803,"subfield":{"id":"https://openalex.org/subfields/2105","display_name":"Renewable Energy, Sustainability and the Environment"},"field":{"id":"https://openalex.org/fields/21","display_name":"Energy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-editing","display_name":"RNA editing","score":0.7264975905418396},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.6963317394256592},{"id":"https://openalex.org/keywords/pentatricopeptide-repeat","display_name":"Pentatricopeptide repeat","score":0.6562106609344482},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4947151839733124},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4651765525341034},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4651193618774414},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.43035072088241577},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4284048080444336},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3097291588783264},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2874821424484253}],"concepts":[{"id":"https://openalex.org/C21786251","wikidata":"https://www.wikidata.org/wiki/Q14886350","display_name":"RNA editing","level":4,"score":0.7264975905418396},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.6963317394256592},{"id":"https://openalex.org/C2775972742","wikidata":"https://www.wikidata.org/wiki/Q24776796","display_name":"Pentatricopeptide repeat","level":5,"score":0.6562106609344482},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4947151839733124},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4651765525341034},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4651193618774414},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.43035072088241577},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4284048080444336},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3097291588783264},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2874821424484253}],"mesh":[{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017393","descriptor_name":"RNA Editing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017393","descriptor_name":"RNA Editing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017393","descriptor_name":"RNA Editing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-018-2244-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2244-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2244-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29970001","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29970001","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:a01325f9e6ae466ba89020e9dbd32c54","is_oa":true,"landing_page_url":"https://doaj.org/article/a01325f9e6ae466ba89020e9dbd32c54","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-18 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4989448","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6029061","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2244-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2244-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2244-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2809717751.pdf","grobid_xml":"https://content.openalex.org/works/W2809717751.grobid-xml"},"referenced_works_count":81,"referenced_works":["https://openalex.org/W1509638582","https://openalex.org/W1563346701","https://openalex.org/W1599815723","https://openalex.org/W1794209129","https://openalex.org/W1902849673","https://openalex.org/W1959985312","https://openalex.org/W1965775785","https://openalex.org/W1968858714","https://openalex.org/W1969959701","https://openalex.org/W1977321395","https://openalex.org/W1978140277","https://openalex.org/W1983054478","https://openalex.org/W1984230956","https://openalex.org/W1991560045","https://openalex.org/W1992840604","https://openalex.org/W1994588239","https://openalex.org/W2000038433","https://openalex.org/W2001565338","https://openalex.org/W2002534993","https://openalex.org/W2002679195","https://openalex.org/W2017807226","https://openalex.org/W2018082146","https://openalex.org/W2020692325","https://openalex.org/W2028513168","https://openalex.org/W2034752550","https://openalex.org/W2038346093","https://openalex.org/W2042792861","https://openalex.org/W2049379715","https://openalex.org/W2061710056","https://openalex.org/W2065881772","https://openalex.org/W2065921473","https://openalex.org/W2066881181","https://openalex.org/W2068993061","https://openalex.org/W2069010601","https://openalex.org/W2071302974","https://openalex.org/W2071960950","https://openalex.org/W2078024930","https://openalex.org/W2079755769","https://openalex.org/W2081601284","https://openalex.org/W2083455965","https://openalex.org/W2086266929","https://openalex.org/W2086383321","https://openalex.org/W2089356258","https://openalex.org/W2095162524","https://openalex.org/W2097413671","https://openalex.org/W2101060529","https://openalex.org/W2101119213","https://openalex.org/W2106850544","https://openalex.org/W2107738624","https://openalex.org/W2110904005","https://openalex.org/W2113955947","https://openalex.org/W2116112403","https://openalex.org/W2122870633","https://openalex.org/W2123502134","https://openalex.org/W2126652939","https://openalex.org/W2126940989","https://openalex.org/W2133159622","https://openalex.org/W2137808350","https://openalex.org/W2140952049","https://openalex.org/W2149109246","https://openalex.org/W2152917039","https://openalex.org/W2160942617","https://openalex.org/W2163677890","https://openalex.org/W2169861297","https://openalex.org/W2219501265","https://openalex.org/W2272534431","https://openalex.org/W2330638503","https://openalex.org/W2416174964","https://openalex.org/W2472287443","https://openalex.org/W2513657259","https://openalex.org/W2530731555","https://openalex.org/W2536738608","https://openalex.org/W2558859241","https://openalex.org/W2562367867","https://openalex.org/W2581716490","https://openalex.org/W2588757085","https://openalex.org/W2590536286","https://openalex.org/W2592544676","https://openalex.org/W2594233239","https://openalex.org/W2790023639","https://openalex.org/W2802132510"],"related_works":["https://openalex.org/W2137808350","https://openalex.org/W3012570326","https://openalex.org/W2133954950","https://openalex.org/W2044357199","https://openalex.org/W2074778402","https://openalex.org/W2073460942","https://openalex.org/W2950917083","https://openalex.org/W2752504820","https://openalex.org/W2067543996","https://openalex.org/W1866491537"],"abstract_inverted_index":{"BACKGROUND:":[0],"Gene":[1],"expression":[2],"in":[3,21,30,45,50,79,106,163,178,228],"plant":[4,23],"chloroplasts":[5],"and":[6,35,62,72,88,126,190,225,263],"mitochondria":[7],"is":[8,53,185],"affected":[9],"by":[10,17,115,181],"RNA":[11,37,75,139,250,268],"editing.":[12,76],"Numerous":[13],"C-to-U":[14],"conversions,":[15],"accompanied":[16],"reverse":[18],"U-to-C":[19,95],"exchanges":[20],"some":[22,46],"clades,":[24],"alter":[25],"the":[26,31,107,164,182,193,212,229,237,246],"genetic":[27],"information":[28,130,258],"encoded":[29],"organelle":[32,118,165],"genomes.":[33],"Predicting":[34],"analyzing":[36],"editing,":[38,251],"which":[39],"ranges":[40],"from":[41],"only":[42],"few":[43],"sites":[44,99,222],"species":[47],"to":[48,90,93,98,151,169,188,244,266],"thousands":[49],"other":[51,203],"taxa,":[52],"bioinformatically":[54],"demanding.":[55],"RESULTS:":[56],"Here,":[57],"we":[58],"present":[59,208,236],"major":[60],"enhancements":[61],"extensions":[63],"of":[64,216,240,248],"PREPACT,":[65],"a":[66],"WWW-based":[67],"service":[68],"for":[69,160,202,211],"analysing,":[70],"predicting":[71],"cataloguing":[73],"plant-type":[74,249],"New":[77],"features":[78,122,239],"PREPACT's":[80,142],"core":[81],"include":[82],"direct":[83],"GenBank":[84],"accession":[85],"query":[86],"input":[87],"options":[89],"restrict":[91],"searches":[92],"candidate":[94],"editing":[96,101,140,149,175,221,261,269],"or":[97,172,177],"where":[100,154],"has":[102,112],"been":[103,113],"documented":[104,220],"previously":[105],"references.":[108],"The":[109],"reference":[110],"database":[111],"extended":[114],"20":[116],"new":[117,123,254],"editomes.":[119],"PREPACT":[120,241],"3.0":[121,242],"modules":[124,255],"\"EdiFacts\"":[125],"\"TargetScan\".":[127],"EdiFacts":[128,256],"integrates":[129],"on":[131,259],"pentatricopeptide":[132],"repeat":[133],"(PPR)":[134],"proteins":[135],"characterized":[136,260],"as":[137,205],"site-specific":[138],"factors.":[141],"editome":[143,230],"references":[144],"connect":[145],"into":[146],"EdiFacts,":[147],"linking":[148],"events":[150],"specific":[152],"co-factors":[153],"known.":[155],"TargetScan":[156,184,264],"allows":[157],"position-weighted":[158],"querying":[159],"sequence":[161,214],"motifs":[162],"references,":[166],"optionally":[167],"restricted":[168],"coding":[170],"regions":[171],"sequences":[173],"around":[174],"sites,":[176],"queries":[179],"uploaded":[180],"user.":[183],"mainly":[186],"intended":[187],"evaluate":[189],"further":[191],"refine":[192],"proposed":[194],"PPR-RNA":[195],"recognition":[196,271],"code":[197],"but":[198],"may":[199],"be":[200],"handy":[201],"tasks":[204],"well.":[206],"We":[207,234],"an":[209],"analysis":[210],"immediate":[213],"environment":[215],"more":[217],"than":[218],"15,000":[219],"finding":[223],"strong":[224],"different":[226],"bias":[227],"data":[231],"sets.":[232],"CONCLUSIONS:":[233],"exemplarily":[235],"novel":[238],"aimed":[243,265],"enhance":[245],"analyses":[247],"including":[252],"its":[253],"integrating":[257],"factors":[262],"analyse":[267],"site":[270],"specificities.":[272]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":34},{"year":2024,"cited_by_count":20},{"year":2023,"cited_by_count":26},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":14},{"year":2018,"cited_by_count":3}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
