{"id":"https://openalex.org/W2806342377","doi":"https://doi.org/10.1186/s12859-018-2219-x","title":"mySyntenyPortal: an application package to construct websites for synteny block analysis","display_name":"mySyntenyPortal: an application package to construct websites for synteny block analysis","publication_year":2018,"publication_date":"2018-06-05","ids":{"openalex":"https://openalex.org/W2806342377","doi":"https://doi.org/10.1186/s12859-018-2219-x","mag":"2806342377","pmid":"https://pubmed.ncbi.nlm.nih.gov/29871588"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2219-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2219-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2219-x.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2219-x.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103190046","display_name":"Jongin Lee","orcid":"https://orcid.org/0000-0001-7870-1526"},"institutions":[{"id":"https://openalex.org/I24062138","display_name":"Konkuk University","ror":"https://ror.org/025h1m602","country_code":"KR","type":"education","lineage":["https://openalex.org/I24062138"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jongin Lee","raw_affiliation_strings":["Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea","institution_ids":["https://openalex.org/I24062138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107947754","display_name":"Daehwan Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I24062138","display_name":"Konkuk University","ror":"https://ror.org/025h1m602","country_code":"KR","type":"education","lineage":["https://openalex.org/I24062138"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Daehwan Lee","raw_affiliation_strings":["Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea","institution_ids":["https://openalex.org/I24062138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063109384","display_name":"Mikang Sim","orcid":"https://orcid.org/0000-0002-8772-7071"},"institutions":[{"id":"https://openalex.org/I24062138","display_name":"Konkuk University","ror":"https://ror.org/025h1m602","country_code":"KR","type":"education","lineage":["https://openalex.org/I24062138"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Mikang Sim","raw_affiliation_strings":["Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea","institution_ids":["https://openalex.org/I24062138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033232650","display_name":"Daehong Kwon","orcid":"https://orcid.org/0000-0003-2545-0430"},"institutions":[{"id":"https://openalex.org/I24062138","display_name":"Konkuk University","ror":"https://ror.org/025h1m602","country_code":"KR","type":"education","lineage":["https://openalex.org/I24062138"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Daehong Kwon","raw_affiliation_strings":["Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea","institution_ids":["https://openalex.org/I24062138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100723551","display_name":"Juyeon Kim","orcid":"https://orcid.org/0000-0002-8090-2973"},"institutions":[{"id":"https://openalex.org/I24062138","display_name":"Konkuk University","ror":"https://ror.org/025h1m602","country_code":"KR","type":"education","lineage":["https://openalex.org/I24062138"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Juyeon Kim","raw_affiliation_strings":["Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea","Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea. jbkim@konkuk.ac.kr"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea","institution_ids":["https://openalex.org/I24062138"]},{"raw_affiliation_string":"Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea. jbkim@konkuk.ac.kr","institution_ids":["https://openalex.org/I24062138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110511389","display_name":"Younhee Ko","orcid":"https://orcid.org/0000-0002-2843-2222"},"institutions":[{"id":"https://openalex.org/I24062138","display_name":"Konkuk University","ror":"https://ror.org/025h1m602","country_code":"KR","type":"education","lineage":["https://openalex.org/I24062138"]},{"id":"https://openalex.org/I83436808","display_name":"Hankuk University of Foreign Studies","ror":"https://ror.org/051q2m369","country_code":"KR","type":"education","lineage":["https://openalex.org/I83436808"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Juyeon Kim","raw_affiliation_strings":["Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea","Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea. jbkim@konkuk.ac.kr","Division of Biomedical Engineering, Hankuk University of Foreign Studies, Yongin, 17035, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea","institution_ids":["https://openalex.org/I24062138"]},{"raw_affiliation_string":"Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea. jbkim@konkuk.ac.kr","institution_ids":["https://openalex.org/I24062138"]},{"raw_affiliation_string":"Division of Biomedical Engineering, Hankuk University of Foreign Studies, Yongin, 17035, South Korea","institution_ids":["https://openalex.org/I83436808"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080954876","display_name":"Jaebum Kim","orcid":"https://orcid.org/0000-0002-2287-9760"},"institutions":[{"id":"https://openalex.org/I24062138","display_name":"Konkuk University","ror":"https://ror.org/025h1m602","country_code":"KR","type":"education","lineage":["https://openalex.org/I24062138"]},{"id":"https://openalex.org/I83436808","display_name":"Hankuk University of Foreign Studies","ror":"https://ror.org/051q2m369","country_code":"KR","type":"education","lineage":["https://openalex.org/I83436808"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Younhee Ko","raw_affiliation_strings":["Division of Biomedical Engineering, Hankuk University of Foreign Studies, Yongin, 17035, South Korea","Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biomedical Engineering, Hankuk University of Foreign Studies, Yongin, 17035, South Korea","institution_ids":["https://openalex.org/I83436808"]},{"raw_affiliation_string":"Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea","institution_ids":["https://openalex.org/I24062138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080954876","display_name":"Jaebum Kim","orcid":"https://orcid.org/0000-0002-2287-9760"},"institutions":[{"id":"https://openalex.org/I24062138","display_name":"Konkuk University","ror":"https://ror.org/025h1m602","country_code":"KR","type":"education","lineage":["https://openalex.org/I24062138"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Jaebum Kim","raw_affiliation_strings":["Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea","Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea. jbkim@konkuk.ac.kr"],"raw_orcid":"https://orcid.org/0000-0002-2287-9760","affiliations":[{"raw_affiliation_string":"Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea","institution_ids":["https://openalex.org/I24062138"]},{"raw_affiliation_string":"Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea. jbkim@konkuk.ac.kr","institution_ids":["https://openalex.org/I24062138"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080954876","display_name":"Jaebum Kim","orcid":"https://orcid.org/0000-0002-2287-9760"},"institutions":[{"id":"https://openalex.org/I24062138","display_name":"Konkuk University","ror":"https://ror.org/025h1m602","country_code":"KR","type":"education","lineage":["https://openalex.org/I24062138"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jaebum Kim","raw_affiliation_strings":["Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea","Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea. jbkim@konkuk.ac.kr"],"raw_orcid":"https://orcid.org/0000-0002-2287-9760","affiliations":[{"raw_affiliation_string":"Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea","institution_ids":["https://openalex.org/I24062138"]},{"raw_affiliation_string":"Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, South Korea. jbkim@konkuk.ac.kr","institution_ids":["https://openalex.org/I24062138"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5080954876","https://openalex.org/A5110511389"],"corresponding_institution_ids":["https://openalex.org/I24062138","https://openalex.org/I83436808"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.3609,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.59071448,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"19","issue":"1","first_page":"216","last_page":"216"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.7017999887466431,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.7017999887466431,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.25200000405311584,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.010499999858438969,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/synteny","display_name":"Synteny","score":0.965958833694458},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.6868652105331421},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6707891821861267},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.6252262592315674},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.54405677318573},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5245540142059326},{"id":"https://openalex.org/keywords/block","display_name":"Block (permutation group theory)","score":0.5083131194114685},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.4961925148963928},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.4864611327648163},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4383402168750763},{"id":"https://openalex.org/keywords/personal-genomics","display_name":"Personal genomics","score":0.43798595666885376},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.41694942116737366},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38349270820617676},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3433200418949127},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2453821301460266},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18945199251174927},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.14737078547477722},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.06767356395721436}],"concepts":[{"id":"https://openalex.org/C53702515","wikidata":"https://www.wikidata.org/wiki/Q971246","display_name":"Synteny","level":4,"score":0.965958833694458},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.6868652105331421},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6707891821861267},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.6252262592315674},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.54405677318573},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5245540142059326},{"id":"https://openalex.org/C2777210771","wikidata":"https://www.wikidata.org/wiki/Q4927124","display_name":"Block (permutation group theory)","level":2,"score":0.5083131194114685},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.4961925148963928},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.4864611327648163},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4383402168750763},{"id":"https://openalex.org/C24103923","wikidata":"https://www.wikidata.org/wiki/Q7170583","display_name":"Personal genomics","level":5,"score":0.43798595666885376},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.41694942116737366},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38349270820617676},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3433200418949127},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2453821301460266},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18945199251174927},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.14737078547477722},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.06767356395721436},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-018-2219-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2219-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2219-x.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29871588","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29871588","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:b41708c34548489d9ab9c027906853c5","is_oa":false,"landing_page_url":"https://doaj.org/article/b41708c34548489d9ab9c027906853c5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-7 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4961951","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5989462","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2219-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2219-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2219-x.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4613448589","display_name":null,"funder_award_id":"P30 CA072720","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7011029212","display_name":null,"funder_award_id":"S10 OD012346","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320321372","display_name":"Konkuk University","ror":"https://ror.org/025h1m602"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2806342377.pdf","grobid_xml":"https://content.openalex.org/works/W2806342377.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1220385903","https://openalex.org/W1599106035","https://openalex.org/W1786896381","https://openalex.org/W1983606201","https://openalex.org/W2029878366","https://openalex.org/W2088015737","https://openalex.org/W2109809376","https://openalex.org/W2128016314","https://openalex.org/W2128516932","https://openalex.org/W2130640131","https://openalex.org/W2132091595","https://openalex.org/W2146384771","https://openalex.org/W2152882637","https://openalex.org/W2158804744","https://openalex.org/W2347154653","https://openalex.org/W2464717012"],"related_works":["https://openalex.org/W2626545547","https://openalex.org/W2571897395","https://openalex.org/W2952105401","https://openalex.org/W4375955900","https://openalex.org/W2566862871","https://openalex.org/W4311179095","https://openalex.org/W2097001759","https://openalex.org/W4375852817","https://openalex.org/W4254915624","https://openalex.org/W2593890490"],"abstract_inverted_index":{"BACKGROUND:":[0],"Advances":[1],"in":[2,29,43],"sequencing":[3],"technologies":[4],"have":[5,51],"facilitated":[6],"large-scale":[7,122,190],"comparative":[8,31,123,185],"genomics":[9],"based":[10,188],"on":[11,189],"whole":[12,191],"genome":[13,76,106,177,192,213],"sequencing.":[14],"Constructing":[15],"and":[16,41,113,118,133,161,163],"investigating":[17],"conserved":[18],"genomic":[19,124,186],"regions":[20],"among":[21],"multiple":[22],"species":[23,158],"(called":[24],"synteny":[25,81,99,207],"blocks)":[26],"are":[27],"essential":[28],"the":[30,140,200],"genomics.":[32],"However,":[33,59],"they":[34,166],"require":[35],"significant":[36],"amounts":[37],"of":[38,75,80,142,155,203],"computational":[39],"resources":[40],"time":[42],"addition":[44],"to":[45,54,70,95,116,152,171,198],"bioinformatics":[46],"skills.":[47],"Many":[48],"web":[49,61],"interfaces":[50,62,115],"been":[52],"developed":[53],"make":[55],"such":[56],"tasks":[57],"easier.":[58],"these":[60],"cannot":[63],"be":[64,129,168],"customized":[65],"for":[66,98,121,149,183,206],"users":[67],"who":[68],"want":[69],"use":[71],"their":[72],"own":[73,105,212],"set":[74],"sequences":[77,193],"or":[78],"definition":[79],"blocks.":[82],"RESULTS:":[83],"To":[84,138],"resolve":[85],"this":[86],"limitation,":[87],"we":[88,144],"present":[89,145],"mySyntenyPortal,":[90,143],"a":[91],"stand-alone":[92],"application":[93],"package":[94],"construct":[96],"websites":[97,120,127,151,205],"block":[100,208],"analyses":[101,187,209],"by":[102,135,176,194],"using":[103],"users'":[104],"data.":[107,214],"mySyntenyPortal":[108,180],"provides":[109],"both":[110],"command":[111],"line":[112],"web-based":[114],"build":[117],"manage":[119],"analyses.":[125],"The":[126],"can":[128,167],"also":[130],"easily":[131,169],"published":[132],"accessed":[134],"other":[136],"users.":[137],"demonstrate":[139],"usability":[141],"an":[146],"example":[147],"study":[148],"building":[150],"compare":[153],"genomes":[154],"three":[156],"mammalian":[157],"(human,":[159],"mouse,":[160],"cow)":[162],"show":[164],"how":[165],"utilized":[170],"identify":[172],"potential":[173],"genes":[174],"affected":[175],"rearrangements.":[178],"CONCLUSIONS:":[179],"will":[181],"contribute":[182],"extended":[184],"providing":[195],"unique":[196],"functionality":[197],"support":[199],"easy":[201],"creation":[202],"interactive":[204],"from":[210],"user's":[211]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":3}],"updated_date":"2026-07-11T18:08:03.149640","created_date":"2025-10-10T00:00:00"}
