{"id":"https://openalex.org/W2808466192","doi":"https://doi.org/10.1186/s12859-018-2205-3","title":"Taxonomy-aware feature engineering for microbiome classification","display_name":"Taxonomy-aware feature engineering for microbiome classification","publication_year":2018,"publication_date":"2018-06-15","ids":{"openalex":"https://openalex.org/W2808466192","doi":"https://doi.org/10.1186/s12859-018-2205-3","mag":"2808466192","pmid":"https://pubmed.ncbi.nlm.nih.gov/29907097"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2205-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2205-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2205-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2205-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004797241","display_name":"Mai Oudah","orcid":"https://orcid.org/0000-0002-2023-0845"},"institutions":[{"id":"https://openalex.org/I120250893","display_name":"New York University Abu Dhabi","ror":"https://ror.org/00e5k0821","country_code":"AE","type":"education","lineage":["https://openalex.org/I120250893","https://openalex.org/I57206974"]},{"id":"https://openalex.org/I176601375","display_name":"Khalifa University of Science and Technology","ror":"https://ror.org/05hffr360","country_code":"AE","type":"education","lineage":["https://openalex.org/I176601375"]}],"countries":["AE"],"is_corresponding":false,"raw_author_name":"Mai Oudah","raw_affiliation_strings":["Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates","New York University Abu Dhabi, Abu Dhabi, United Arab Emirates"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates","institution_ids":["https://openalex.org/I176601375"]},{"raw_affiliation_string":"New York University Abu Dhabi, Abu Dhabi, United Arab Emirates","institution_ids":["https://openalex.org/I120250893"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075543445","display_name":"Andreas Henschel","orcid":"https://orcid.org/0000-0003-1386-5372"},"institutions":[{"id":"https://openalex.org/I176601375","display_name":"Khalifa University of Science and Technology","ror":"https://ror.org/05hffr360","country_code":"AE","type":"education","lineage":["https://openalex.org/I176601375"]}],"countries":["AE"],"is_corresponding":false,"raw_author_name":"Andreas Henschel","raw_affiliation_strings":["Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates. andreas.henschel@ku.ac.ae","Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates. andreas.henschel@ku.ac.ae","institution_ids":["https://openalex.org/I176601375"]},{"raw_affiliation_string":"Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates","institution_ids":["https://openalex.org/I176601375"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.0619,"has_fulltext":true,"cited_by_count":95,"citation_normalized_percentile":{"value":0.92479192,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"19","issue":"1","first_page":"227","last_page":"227"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.8618999719619751,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.8618999719619751,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.029200000688433647,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.026900000870227814,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.6899012327194214},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6387807130813599},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.6359765529632568},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6145426630973816},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.5659313797950745},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5123530626296997},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.49323147535324097},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.47509706020355225},{"id":"https://openalex.org/keywords/feature-engineering","display_name":"Feature engineering","score":0.44056281447410583},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.43380531668663025},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.431846022605896},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.4294317066669464},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3954606354236603},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3421311378479004},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23024094104766846},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.2222987413406372},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.1537410318851471},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11561188101768494}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.6899012327194214},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6387807130813599},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.6359765529632568},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6145426630973816},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.5659313797950745},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5123530626296997},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.49323147535324097},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.47509706020355225},{"id":"https://openalex.org/C2778827112","wikidata":"https://www.wikidata.org/wiki/Q22245680","display_name":"Feature engineering","level":3,"score":0.44056281447410583},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.43380531668663025},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.431846022605896},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.4294317066669464},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3954606354236603},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3421311378479004},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23024094104766846},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.2222987413406372},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.1537410318851471},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11561188101768494},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-018-2205-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2205-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2205-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29907097","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29907097","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6003080","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6003080","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:c2bdcd8fccf946c29609adddef89099a","is_oa":true,"landing_page_url":"https://doaj.org/article/c2bdcd8fccf946c29609adddef89099a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-13 (2018)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2205-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2205-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2205-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2808466192.pdf","grobid_xml":"https://content.openalex.org/works/W2808466192.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W229800277","https://openalex.org/W1554663460","https://openalex.org/W1560107318","https://openalex.org/W1585743408","https://openalex.org/W1811186957","https://openalex.org/W1844490078","https://openalex.org/W1978709058","https://openalex.org/W1982547370","https://openalex.org/W1989889539","https://openalex.org/W2023695505","https://openalex.org/W2032230795","https://openalex.org/W2072970694","https://openalex.org/W2080283023","https://openalex.org/W2096604969","https://openalex.org/W2100080086","https://openalex.org/W2107097628","https://openalex.org/W2113977541","https://openalex.org/W2123914286","https://openalex.org/W2127862315","https://openalex.org/W2128769815","https://openalex.org/W2130725058","https://openalex.org/W2133990480","https://openalex.org/W2136417551","https://openalex.org/W2181732012","https://openalex.org/W2265655986","https://openalex.org/W2267861477","https://openalex.org/W2309755354","https://openalex.org/W2473355215","https://openalex.org/W4388297464"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W4388282505","https://openalex.org/W3139084279","https://openalex.org/W4360615883"],"abstract_inverted_index":{"BACKGROUND:":[0],"What":[1],"is":[2,86,152,173],"a":[3,24,31,43,106,176,185,234],"healthy":[4,191],"microbiome?":[5],"The":[6,150,171],"pursuit":[7],"of":[8,17,27,51,63,72,93,109,161,168,188,209,213,237],"this":[9],"and":[10,61,114,127,239,249],"many":[11],"related":[12],"questions,":[13],"especially":[14],"in":[15,23,33,65,144,175,207],"light":[16],"the":[18,49,56,70,81,83,90,133,155,202,214,247],"recently":[19],"recognized":[20],"microbial":[21],"component":[22],"wide":[25],"range":[26,187],"diseases":[28],"has":[29,121],"sparked":[30],"surge":[32],"metagenomic":[34,66],"studies.":[35],"They":[36],"are":[37,48,253],"often":[38,156],"not":[39],"simply":[40],"attributable":[41],"to":[42,136,153,184,242],"single":[44],"pathogen":[45],"but":[46],"rather":[47],"result":[50],"complex":[52],"ecological":[53],"processes.":[54],"Relatedly,":[55],"increasing":[57],"DNA":[58],"sequencing":[59],"depth":[60],"number":[62],"samples":[64],"case-control":[67],"studies":[68],"enabled":[69],"applicability":[71],"powerful":[73],"statistical":[74],"methods,":[75],"e.g.":[76],"Machine":[77,116,216],"Learning":[78,217],"approaches.":[79],"For":[80],"latter,":[82],"feature":[84,125,145,223],"space":[85],"typically":[87],"shaped":[88],"by":[89,99,166],"relative":[91],"abundances":[92],"operational":[94],"taxonomic":[95,169],"units,":[96],"as":[97],"determined":[98],"cost-effective":[100],"phylogenetic":[101,138],"marker":[102],"gene":[103],"profiles.":[104],"While":[105],"substantial":[107,199],"body":[108],"microbiome/microbiota":[110],"research":[111],"involves":[112],"unsupervised":[113],"supervised":[115],"Learning,":[117],"very":[118],"little":[119],"attention":[120],"been":[122],"put":[123],"on":[124],"selection":[126],"engineering.":[128],"RESULTS:":[129],"We":[130,197],"here":[131],"propose":[132],"first":[134],"algorithm":[135,172],"exploit":[137,154],"hierarchy":[139],"(i.e.":[140],"an":[141],"all-encompassing":[142],"taxonomy)":[143],"engineering":[146],"for":[147],"microbiota":[148,178,194,204],"classification.":[149],"rationale":[151],"mono-":[157],"or":[158],"oligophyletic":[159],"distribution":[160],"relevant":[162],"(but":[163],"hidden)":[164],"traits":[165],"virtue":[167],"abstraction.":[170],"embedded":[174],"comprehensive":[177],"classification":[179,205,210],"pipeline,":[180],"which":[181],"we":[182],"applied":[183],"diverse":[186],"datasets,":[189],"distinguishing":[190],"from":[192],"diseased":[193],"samples.":[195],"CONCLUSION:":[196],"demonstrate":[198],"improvements":[200],"over":[201],"state-of-the-art":[203],"tools":[206],"terms":[208],"accuracy,":[211],"regardless":[212],"actual":[215],"technique":[218],"while":[219],"using":[220],"drastically":[221],"reduced":[222],"spaces.":[224],"Moreover,":[225],"generalized":[226],"features":[227,252],"bear":[228],"great":[229],"explanatory":[230],"value:":[231],"they":[232],"provide":[233,243],"concise":[235],"description":[236],"conditions":[238],"thus":[240],"help":[241],"pathophysiological":[244],"insights.":[245],"Indeed,":[246],"automatically":[248],"reproducibly":[250],"derived":[251],"consistent":[254],"with":[255],"previously":[256],"published":[257],"domain":[258],"expert":[259],"analyses.":[260]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":21},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":9}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}