{"id":"https://openalex.org/W2774947757","doi":"https://doi.org/10.1186/s12859-018-2171-9","title":"ProLego: tool for extracting and visualizing topological modules in protein structures","display_name":"ProLego: tool for extracting and visualizing topological modules in protein structures","publication_year":2018,"publication_date":"2018-05-04","ids":{"openalex":"https://openalex.org/W2774947757","doi":"https://doi.org/10.1186/s12859-018-2171-9","mag":"2774947757","pmid":"https://pubmed.ncbi.nlm.nih.gov/29728050"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2171-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2171-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2171-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2171-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075271127","display_name":"Taushif Khan","orcid":"https://orcid.org/0000-0002-7917-8965"},"institutions":[{"id":"https://openalex.org/I152429107","display_name":"Jawaharlal Nehru University","ror":"https://ror.org/0567v8t28","country_code":"IN","type":"education","lineage":["https://openalex.org/I152429107"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Taushif Khan","raw_affiliation_strings":["School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India. taushifkhan@gmail.com","School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India"],"affiliations":[{"raw_affiliation_string":"School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India. taushifkhan@gmail.com","institution_ids":[]},{"raw_affiliation_string":"School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India","institution_ids":["https://openalex.org/I152429107"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015469857","display_name":"Shailesh Kumar Panday","orcid":"https://orcid.org/0000-0003-3099-8679"},"institutions":[{"id":"https://openalex.org/I152429107","display_name":"Jawaharlal Nehru University","ror":"https://ror.org/0567v8t28","country_code":"IN","type":"education","lineage":["https://openalex.org/I152429107"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Shailesh Kumar Panday","raw_affiliation_strings":["School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India"],"affiliations":[{"raw_affiliation_string":"School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India","institution_ids":["https://openalex.org/I152429107"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010825916","display_name":"Indira Ghosh","orcid":"https://orcid.org/0000-0001-8413-0387"},"institutions":[{"id":"https://openalex.org/I152429107","display_name":"Jawaharlal Nehru University","ror":"https://ror.org/0567v8t28","country_code":"IN","type":"education","lineage":["https://openalex.org/I152429107"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Indira Ghosh","raw_affiliation_strings":["School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India"],"affiliations":[{"raw_affiliation_string":"School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India","institution_ids":["https://openalex.org/I152429107"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5075271127"],"corresponding_institution_ids":["https://openalex.org/I152429107"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0928,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.45654125,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"19","issue":"1","first_page":"167","last_page":"167"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9768000245094299,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.963699996471405,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5955122709274292},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5461606979370117},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4765908420085907},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.39959633350372314},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3302602171897888},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16957852244377136},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15879541635513306},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10013407468795776},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08235320448875427},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.07196542620658875}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5955122709274292},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5461606979370117},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4765908420085907},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.39959633350372314},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3302602171897888},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16957852244377136},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15879541635513306},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10013407468795776},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08235320448875427},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.07196542620658875}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-018-2171-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2171-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2171-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29728050","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29728050","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:dcc3be1cfca64c2da7cd9846bd4cd14a","is_oa":true,"landing_page_url":"https://doaj.org/article/dcc3be1cfca64c2da7cd9846bd4cd14a","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-6 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4866262","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC5935970","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5935970","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5935970","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2171-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2171-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2171-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320717","display_name":"Department of Biotechnology, Ministry of Science and Technology, India","ror":"https://ror.org/03tjsyq23"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2774947757.pdf","grobid_xml":"https://content.openalex.org/works/W2774947757.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1069704211","https://openalex.org/W1987482901","https://openalex.org/W1992589673","https://openalex.org/W2001353447","https://openalex.org/W2008708467","https://openalex.org/W2010025771","https://openalex.org/W2043046112","https://openalex.org/W2051872583","https://openalex.org/W2061098149","https://openalex.org/W2065670043","https://openalex.org/W2074223478","https://openalex.org/W2076467422","https://openalex.org/W2082488805","https://openalex.org/W2112084742","https://openalex.org/W2138251991","https://openalex.org/W2142749069","https://openalex.org/W2159653318","https://openalex.org/W2161072217","https://openalex.org/W2168332319","https://openalex.org/W2278516122","https://openalex.org/W2285068092","https://openalex.org/W2735621019","https://openalex.org/W2743706638","https://openalex.org/W2750436588"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W1971568933","https://openalex.org/W2013243191"],"abstract_inverted_index":{"ProLego,":[0],"provides":[1],"an":[2,15],"alternative":[3],"but":[4],"comprehensive":[5],"way":[6],"to":[7],"scan":[8],"and":[9],"visualize":[10],"protein":[11,19],"topology":[12],"along":[13],"with":[14],"extensive":[16],"database":[17],"of":[18],"topology.":[20],"ProLego":[21],"can":[22],"be":[23],"found":[24],"at":[25],"http://www.proteinlego.com.":[26]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
