{"id":"https://openalex.org/W2952298377","doi":"https://doi.org/10.1186/s12859-018-2115-4","title":"Notos - a galaxy tool to analyze CpN observed expected ratios for inferring DNA methylation types","display_name":"Notos - a galaxy tool to analyze CpN observed expected ratios for inferring DNA methylation types","publication_year":2018,"publication_date":"2018-03-27","ids":{"openalex":"https://openalex.org/W2952298377","doi":"https://doi.org/10.1186/s12859-018-2115-4","mag":"2952298377","pmid":"https://pubmed.ncbi.nlm.nih.gov/29587630"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2115-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2115-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2115-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2115-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033444929","display_name":"Ingo Bulla","orcid":"https://orcid.org/0000-0003-3460-688X"},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]},{"id":"https://openalex.org/I36522303","display_name":"Universit\u00e4t Greifswald","ror":"https://ror.org/00r1edq15","country_code":"DE","type":"education","lineage":["https://openalex.org/I36522303"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Ingo Bulla","raw_affiliation_strings":["Institut f\u00fcr Mathematik und Informatik, Universit\u00e4t Greifswald, Walther-Rathenau-Str. 47, Greifswald, 17487, Germany","Theoretical Biology and Biophysics, Group T-6, Los Alamos National Laboratory, New Mexico, Los Alamos, USA"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Mathematik und Informatik, Universit\u00e4t Greifswald, Walther-Rathenau-Str. 47, Greifswald, 17487, Germany","institution_ids":["https://openalex.org/I36522303"]},{"raw_affiliation_string":"Theoretical Biology and Biophysics, Group T-6, Los Alamos National Laboratory, New Mexico, Los Alamos, USA","institution_ids":["https://openalex.org/I1343871089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025201856","display_name":"Beno\u00eet Aliaga","orcid":"https://orcid.org/0000-0002-9724-7004"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I151295451","display_name":"Universit\u00e9 de Perpignan","ror":"https://ror.org/03am2jy38","country_code":"FR","type":"education","lineage":["https://openalex.org/I151295451"]},{"id":"https://openalex.org/I154202486","display_name":"Ifremer","ror":"https://ror.org/044jxhp58","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154202486"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Beno\u00eet Aliaga","raw_affiliation_strings":["Univ. Perpignan Via Domitia, IHPE UMR 5244, CNRS, IFREMER, Univ. Montpellier, 58 Avenue Paul Alduy, Perpignan, 66860, France"],"affiliations":[{"raw_affiliation_string":"Univ. Perpignan Via Domitia, IHPE UMR 5244, CNRS, IFREMER, Univ. Montpellier, 58 Avenue Paul Alduy, Perpignan, 66860, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I151295451","https://openalex.org/I1294671590","https://openalex.org/I154202486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056475589","display_name":"Virginia Lacal","orcid":null},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Virginia Lacal","raw_affiliation_strings":["Department of Mathematics, University of Bergen, P.O. Box 7803, Bergen, 5020, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Bergen, P.O. Box 7803, Bergen, 5020, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073492386","display_name":"Jan Bulla","orcid":"https://orcid.org/0000-0003-3308-0652"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Jan Bulla","raw_affiliation_strings":["Department of Mathematics, University of Bergen, P.O. Box 7803, Bergen, 5020, Norway. Jan.Bulla@uib.no","Department of Mathematics, University of Bergen, P.O. Box 7803, Bergen, 5020, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Bergen, P.O. Box 7803, Bergen, 5020, Norway. Jan.Bulla@uib.no","institution_ids":["https://openalex.org/I4432739"]},{"raw_affiliation_string":"Department of Mathematics, University of Bergen, P.O. Box 7803, Bergen, 5020, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049390487","display_name":"Christoph Grunau","orcid":"https://orcid.org/0000-0002-2161-412X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I151295451","display_name":"Universit\u00e9 de Perpignan","ror":"https://ror.org/03am2jy38","country_code":"FR","type":"education","lineage":["https://openalex.org/I151295451"]},{"id":"https://openalex.org/I154202486","display_name":"Ifremer","ror":"https://ror.org/044jxhp58","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154202486"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christoph Grunau","raw_affiliation_strings":["Univ. Perpignan Via Domitia, IHPE UMR 5244, CNRS, IFREMER, Univ. Montpellier, 58 Avenue Paul Alduy, Perpignan, 66860, France"],"affiliations":[{"raw_affiliation_string":"Univ. Perpignan Via Domitia, IHPE UMR 5244, CNRS, IFREMER, Univ. Montpellier, 58 Avenue Paul Alduy, Perpignan, 66860, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I151295451","https://openalex.org/I1294671590","https://openalex.org/I154202486"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016451177","display_name":"Cristian Chaparro","orcid":"https://orcid.org/0000-0002-5162-349X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I151295451","display_name":"Universit\u00e9 de Perpignan","ror":"https://ror.org/03am2jy38","country_code":"FR","type":"education","lineage":["https://openalex.org/I151295451"]},{"id":"https://openalex.org/I154202486","display_name":"Ifremer","ror":"https://ror.org/044jxhp58","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154202486"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Cristian Chaparro","raw_affiliation_strings":["Univ. Perpignan Via Domitia, IHPE UMR 5244, CNRS, IFREMER, Univ. Montpellier, 58 Avenue Paul Alduy, Perpignan, 66860, France"],"affiliations":[{"raw_affiliation_string":"Univ. Perpignan Via Domitia, IHPE UMR 5244, CNRS, IFREMER, Univ. Montpellier, 58 Avenue Paul Alduy, Perpignan, 66860, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I151295451","https://openalex.org/I1294671590","https://openalex.org/I154202486"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5033444929"],"corresponding_institution_ids":["https://openalex.org/I1343871089","https://openalex.org/I36522303"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.5825,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.84042686,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"19","issue":"1","first_page":"105","last_page":"105"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.7735529541969299},{"id":"https://openalex.org/keywords/cpg-site","display_name":"CpG site","score":0.7385542392730713},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5871138572692871},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5496441721916199},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.4920003116130829},{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.46220967173576355},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.45418158173561096},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4283212125301361},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.41830724477767944},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39858704805374146},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19200915098190308},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.09666591882705688}],"concepts":[{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.7735529541969299},{"id":"https://openalex.org/C140173407","wikidata":"https://www.wikidata.org/wiki/Q1138358","display_name":"CpG site","level":5,"score":0.7385542392730713},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5871138572692871},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5496441721916199},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.4920003116130829},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.46220967173576355},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.45418158173561096},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4283212125301361},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.41830724477767944},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39858704805374146},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19200915098190308},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09666591882705688}],"mesh":[{"descriptor_ui":"D000489","descriptor_name":"Alligators and Crocodiles","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000489","descriptor_name":"Alligators and Crocodiles","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000489","descriptor_name":"Alligators and Crocodiles","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000489","descriptor_name":"Alligators and Crocodiles","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000489","descriptor_name":"Alligators and Crocodiles","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002957","descriptor_name":"Citrus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002957","descriptor_name":"Citrus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002957","descriptor_name":"Citrus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002957","descriptor_name":"Citrus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002957","descriptor_name":"Citrus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006110","descriptor_name":"Grasshoppers","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006110","descriptor_name":"Grasshoppers","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006110","descriptor_name":"Grasshoppers","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006110","descriptor_name":"Grasshoppers","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006110","descriptor_name":"Grasshoppers","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009036","descriptor_name":"Moths","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009036","descriptor_name":"Moths","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009036","descriptor_name":"Moths","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009036","descriptor_name":"Moths","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009036","descriptor_name":"Moths","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009492","descriptor_name":"Neurospora crassa","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009492","descriptor_name":"Neurospora crassa","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009492","descriptor_name":"Neurospora crassa","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009492","descriptor_name":"Neurospora crassa","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009492","descriptor_name":"Neurospora crassa","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12859-018-2115-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2115-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2115-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29587630","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29587630","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:osti.gov:1626767","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1626767","pdf_url":"https://www.osti.gov/servlets/purl/1626767","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:HAL:hal-01746203v1","is_oa":true,"landing_page_url":"https://hal.science/hal-01746203","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2018, 19, pp.105. &#x27E8;10.1186/s12859-018-2115-4&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:archimer.ifremer.fr:54816","is_oa":true,"landing_page_url":"https://archimer.ifremer.fr/doc/00437/54816/","pdf_url":null,"source":{"id":"https://openalex.org/S4377196267","display_name":"Institutional Archive of Ifremer (French Research Institute for Exploitation of the Sea)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I154202486","host_organization_name":"Ifremer","host_organization_lineage":["https://openalex.org/I154202486"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bmc Bioinformatics (1471-2105) (Biomed Central Ltd), 2018 , Vol. 19 , N. 105 , P. 13p.","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:4a76734ad0dc425ba21c32fa62afa59d","is_oa":true,"landing_page_url":"https://doaj.org/article/4a76734ad0dc425ba21c32fa62afa59d","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-13 (2018)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5870242","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5870242","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2115-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2115-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2115-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.75}],"awards":[{"id":"https://openalex.org/G1268954550","display_name":null,"funder_award_id":"34040YK","funder_id":"https://openalex.org/F4320323942","funder_display_name":"Campus France"},{"id":"https://openalex.org/G3977127270","display_name":null,"funder_award_id":"34040YK","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G487212075","display_name":null,"funder_award_id":"ANR-10-BLAN-1720","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4986515114","display_name":null,"funder_award_id":"PhD grant","funder_id":"https://openalex.org/F4320323078","funder_display_name":"Universitetet i Bergen"},{"id":"https://openalex.org/G7119251823","display_name":null,"funder_award_id":"BU 26854-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7240651115","display_name":null,"funder_award_id":"ANR-10","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8167880450","display_name":null,"funder_award_id":"BU 2685/4-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320323078","display_name":"Universitetet i Bergen","ror":"https://ror.org/03zga2b32"},{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"},{"id":"https://openalex.org/F4320323942","display_name":"Campus France","ror":"https://ror.org/04wtce741"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2952298377.pdf","grobid_xml":"https://content.openalex.org/works/W2952298377.grobid-xml"},"referenced_works_count":87,"referenced_works":["https://openalex.org/W204885769","https://openalex.org/W1507444366","https://openalex.org/W1511686105","https://openalex.org/W1539662979","https://openalex.org/W1564380213","https://openalex.org/W1571146706","https://openalex.org/W1735309556","https://openalex.org/W1773919258","https://openalex.org/W1955829540","https://openalex.org/W1964797108","https://openalex.org/W1969491977","https://openalex.org/W1978295915","https://openalex.org/W1981903823","https://openalex.org/W1988933460","https://openalex.org/W1991527658","https://openalex.org/W1995463262","https://openalex.org/W1997822041","https://openalex.org/W2003144493","https://openalex.org/W2005607933","https://openalex.org/W2016397870","https://openalex.org/W2016728733","https://openalex.org/W2024848067","https://openalex.org/W2026073440","https://openalex.org/W2028240906","https://openalex.org/W2041956242","https://openalex.org/W2044484466","https://openalex.org/W2051555347","https://openalex.org/W2054523001","https://openalex.org/W2055742349","https://openalex.org/W2057249415","https://openalex.org/W2066121814","https://openalex.org/W2069902477","https://openalex.org/W2075447151","https://openalex.org/W2075710011","https://openalex.org/W2076795549","https://openalex.org/W2076845646","https://openalex.org/W2077074028","https://openalex.org/W2084748297","https://openalex.org/W2094247278","https://openalex.org/W2094395530","https://openalex.org/W2099915381","https://openalex.org/W2100176256","https://openalex.org/W2100584182","https://openalex.org/W2101259235","https://openalex.org/W2102105282","https://openalex.org/W2102738091","https://openalex.org/W2103704928","https://openalex.org/W2106340111","https://openalex.org/W2109820980","https://openalex.org/W2111283734","https://openalex.org/W2111857389","https://openalex.org/W2114772657","https://openalex.org/W2114970231","https://openalex.org/W2115936826","https://openalex.org/W2121417886","https://openalex.org/W2126711065","https://openalex.org/W2129905273","https://openalex.org/W2131101891","https://openalex.org/W2131658636","https://openalex.org/W2135607040","https://openalex.org/W2137505881","https://openalex.org/W2141524808","https://openalex.org/W2147743668","https://openalex.org/W2148889490","https://openalex.org/W2149206894","https://openalex.org/W2149591029","https://openalex.org/W2153052264","https://openalex.org/W2154018910","https://openalex.org/W2154228288","https://openalex.org/W2159016980","https://openalex.org/W2159135906","https://openalex.org/W2160704282","https://openalex.org/W2161612432","https://openalex.org/W2163288162","https://openalex.org/W2171574782","https://openalex.org/W2211882453","https://openalex.org/W2228160849","https://openalex.org/W2259662620","https://openalex.org/W2565154125","https://openalex.org/W2586637063","https://openalex.org/W2607306907","https://openalex.org/W2616817562","https://openalex.org/W2747262656","https://openalex.org/W2769730089","https://openalex.org/W2909103783","https://openalex.org/W4285719527","https://openalex.org/W4297073864"],"related_works":["https://openalex.org/W2214376880","https://openalex.org/W3212149434","https://openalex.org/W2073893804","https://openalex.org/W2291484187","https://openalex.org/W2902329290","https://openalex.org/W2169344098","https://openalex.org/W2139872319","https://openalex.org/W2052355316","https://openalex.org/W2046964473","https://openalex.org/W2107880877"],"abstract_inverted_index":{"We":[0],"show":[1],"that":[2,27],"KDE":[3],"delivers":[4],"robust":[5],"descriptions":[6],"of":[7,31,52,54,65,71],"CpN":[8],"o/e":[9],"distributions.":[10],"For":[11],"straightforward":[12],"processing,":[13],"we":[14],"have":[15],"developed":[16],"a":[17,37,60],"Galaxy":[18],"tool,":[19],"called":[20],"Notos":[21,75],"and":[22,35,50,68,80],"available":[23],"at":[24],"the":[25,45,48,55,63,66,69],"ToolShed,":[26],"calculates":[28],"these":[29],"ratios":[30],"input":[32],"FASTA":[33],"files":[34],"fits":[36],"density":[38,47],"to":[39],"their":[40],"empirical":[41],"distribution.":[42],"Based":[43],"on":[44],"estimated":[46],"number":[49,67],"shape":[51],"modes":[53],"distribution":[56],"is":[57,76],"determined,":[58],"providing":[59],"rational":[61],"for":[62],"prediction":[64],"types":[70],"different":[72],"methylation":[73],"classes.":[74],"written":[77],"in":[78],"R":[79],"Perl.":[81]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
