{"id":"https://openalex.org/W2797300906","doi":"https://doi.org/10.1186/s12859-018-2100-y","title":"Higher-order partial least squares for predicting gene expression levels from chromatin states","display_name":"Higher-order partial least squares for predicting gene expression levels from chromatin states","publication_year":2018,"publication_date":"2018-04-01","ids":{"openalex":"https://openalex.org/W2797300906","doi":"https://doi.org/10.1186/s12859-018-2100-y","mag":"2797300906","pmid":"https://pubmed.ncbi.nlm.nih.gov/29671394"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2100-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2100-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2100-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2100-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048884064","display_name":"Shiquan Sun","orcid":"https://orcid.org/0000-0002-9150-6992"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Shiquan Sun","raw_affiliation_strings":["Department of Biostatistics, University of Michigan, Ann Arbor, 48109, MI, USA. sqsun@nwpu.edu.cn","School of Computer Science, Northwestern Polytechnical University, Xi'an, 710072, Shaanxi, People's Republic of China. sqsun@nwpu.edu.cn","School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, People\u2019s Republic of China","Department of Biostatistics, University of Michigan, Ann Arbor, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, University of Michigan, Ann Arbor, 48109, MI, USA. sqsun@nwpu.edu.cn","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an, 710072, Shaanxi, People's Republic of China. sqsun@nwpu.edu.cn","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, People\u2019s Republic of China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Department of Biostatistics, University of Michigan, Ann Arbor, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054219637","display_name":"Xifang Sun","orcid":"https://orcid.org/0000-0002-5739-4624"},"institutions":[{"id":"https://openalex.org/I181903023","display_name":"Xi'an Shiyou University","ror":"https://ror.org/040c7js64","country_code":"CN","type":"education","lineage":["https://openalex.org/I181903023"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xifang Sun","raw_affiliation_strings":["School of Science, Xi'an Shiyou University, Xi'an, 710065, Shaanxi, People's Republic of China","School of Science, Xi\u2019an Shiyou University, Xi\u2019an, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Science, Xi'an Shiyou University, Xi'an, 710065, Shaanxi, People's Republic of China","institution_ids":["https://openalex.org/I181903023"]},{"raw_affiliation_string":"School of Science, Xi\u2019an Shiyou University, Xi\u2019an, People\u2019s Republic of China","institution_ids":["https://openalex.org/I181903023"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083558362","display_name":"Yan Zheng","orcid":"https://orcid.org/0000-0001-7254-7564"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Zheng","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Xi'an, 710072, Shaanxi, People's Republic of China","School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an, 710072, Shaanxi, People's Republic of China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, People\u2019s Republic of China","institution_ids":["https://openalex.org/I17145004"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5048884064"],"corresponding_institution_ids":["https://openalex.org/I17145004","https://openalex.org/I27837315"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.7415,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.68446342,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"19","issue":"S5","first_page":"113","last_page":"113"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9667999744415283,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9667999744415283,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.014000000432133675,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.008200000040233135,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.8296515345573425},{"id":"https://openalex.org/keywords/h3k4me3","display_name":"H3K4me3","score":0.7414239645004272},{"id":"https://openalex.org/keywords/histone","display_name":"Histone","score":0.7018304467201233},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5901777744293213},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5752270817756653},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5745593309402466},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5181947350502014},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.4852176010608673},{"id":"https://openalex.org/keywords/degeneracy","display_name":"Degeneracy (biology)","score":0.46685272455215454},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4594261646270752},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4530687630176544},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4482731819152832},{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.44058680534362793},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2369806468486786},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.14494872093200684}],"concepts":[{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.8296515345573425},{"id":"https://openalex.org/C2780914512","wikidata":"https://www.wikidata.org/wiki/Q25323943","display_name":"H3K4me3","level":5,"score":0.7414239645004272},{"id":"https://openalex.org/C64927066","wikidata":"https://www.wikidata.org/wiki/Q36293","display_name":"Histone","level":3,"score":0.7018304467201233},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5901777744293213},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5752270817756653},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5745593309402466},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5181947350502014},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.4852176010608673},{"id":"https://openalex.org/C2777727622","wikidata":"https://www.wikidata.org/wiki/Q5251772","display_name":"Degeneracy (biology)","level":2,"score":0.46685272455215454},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4594261646270752},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4530687630176544},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4482731819152832},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.44058680534362793},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2369806468486786},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.14494872093200684},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002679","descriptor_name":"Pan troglodytes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002679","descriptor_name":"Pan troglodytes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002679","descriptor_name":"Pan troglodytes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008253","descriptor_name":"Macaca mulatta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008253","descriptor_name":"Macaca mulatta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008253","descriptor_name":"Macaca mulatta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016018","descriptor_name":"Least-Squares Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016018","descriptor_name":"Least-Squares Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016018","descriptor_name":"Least-Squares Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-018-2100-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2100-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2100-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29671394","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29671394","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:3c30d4c4608b4dd3a2c376ea67dc5052","is_oa":true,"landing_page_url":"https://doaj.org/article/3c30d4c4608b4dd3a2c376ea67dc5052","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss S5, Pp 47-54 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4847969","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC5907142","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5907142","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5907142","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2100-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2100-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2100-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","display_name":"Life below water","score":0.41999998688697815}],"awards":[{"id":"https://openalex.org/G2960379653","display_name":null,"funder_award_id":"3102017OQD098","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2797300906.pdf","grobid_xml":"https://content.openalex.org/works/W2797300906.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W273955616","https://openalex.org/W2002698073","https://openalex.org/W2015416439","https://openalex.org/W2017840637","https://openalex.org/W2022936129","https://openalex.org/W2024584416","https://openalex.org/W2042904283","https://openalex.org/W2044826047","https://openalex.org/W2048759253","https://openalex.org/W2096083625","https://openalex.org/W2102619694","https://openalex.org/W2104326170","https://openalex.org/W2127081697","https://openalex.org/W2130942354","https://openalex.org/W2137183255","https://openalex.org/W2140593657","https://openalex.org/W2142205294","https://openalex.org/W2147524392","https://openalex.org/W2155639125","https://openalex.org/W2163250689","https://openalex.org/W2164116506","https://openalex.org/W2171033594","https://openalex.org/W2482092413","https://openalex.org/W2485236528","https://openalex.org/W2505478609","https://openalex.org/W2549247408","https://openalex.org/W2557591078","https://openalex.org/W2614701255","https://openalex.org/W2730833391","https://openalex.org/W2742577494","https://openalex.org/W2754853753","https://openalex.org/W2776531206","https://openalex.org/W2776616144","https://openalex.org/W2950758817","https://openalex.org/W4240255376"],"related_works":["https://openalex.org/W2072087349","https://openalex.org/W2036052587","https://openalex.org/W2372940580","https://openalex.org/W1968408915","https://openalex.org/W98379584","https://openalex.org/W2413824894","https://openalex.org/W2030159793","https://openalex.org/W3145419749","https://openalex.org/W3038565614","https://openalex.org/W3112469286"],"abstract_inverted_index":{"BACKGROUND:":[0],"Extensive":[1],"studies":[2],"have":[3],"shown":[4],"that":[5,122,173],"gene":[6,41,71,131],"expression":[7,42,72,132],"levels":[8,133],"are":[9,29],"strongly":[10],"affected":[11],"by":[12],"chromatin":[13,67],"mark":[14],"combinations":[15],"via":[16],"at":[17],"least":[18],"two":[19],"mechanisms,":[20],"i.e.,":[21],"activation":[22],"or":[23],"repression.":[24],"But":[25],"their":[26],"combinatorial":[27],"patterns":[28],"still":[30],"unclear.":[31],"To":[32],"further":[33],"understand":[34],"the":[35,93,123,174],"relationship":[36],"between":[37,185],"histone":[38,109,186],"modifications":[39,110,187],"and":[40,87,105,116,154,160],"levels,":[43],"here":[44],"in":[45,66],"this":[46,168],"paper,":[47],"we":[48],"introduce":[49],"a":[50],"purely":[51],"geometric":[52],"higher-order":[53,175],"representation,":[54],"tensor":[55],"(also":[56],"called":[57],"multidimensional":[58],"array),":[59],"which":[60],"might":[61],"borrow":[62],"more":[63,127,145,181],"unknown":[64,182],"interactions":[65],"states":[68],"to":[69,129,143,171,179],"predicting":[70,130],"levels.":[73],"RESULTS:":[74],"The":[75,164],"prediction":[76],"models":[77],"were":[78],"learned":[79],"from":[80],"regions":[81],"around":[82],"upstream":[83],"10k":[84,89],"base":[85,90],"pairs":[86,91],"downstream":[88],"of":[92,167],"transcriptional":[94],"start":[95],"sites":[96],"(TSSs)":[97],"on":[98,148],"three":[99],"species":[100],"(i.e.,":[101,111],"Human,":[102],"Rhesus":[103],"Macaque,":[104],"Chimpanzee)":[106],"with":[107],"five":[108],"H3K4me1,":[112],"H3K4me3,":[113],"H3K27ac,":[114],"H3K27me3,":[115],"Pol":[117],"II).":[118],"Experimental":[119],"results":[120],"demonstrate":[121],"proposed":[124],"method":[125,141],"is":[126,170,177],"powerful":[128,146],"than":[134],"several":[135],"other":[136],"popular":[137],"methods.":[138],"Specifically,":[139],"our":[140],"enable":[142],"get":[144],"performance":[147],"both":[149],"commonly":[150],"used":[151],"criteria,":[152],"R":[153],"RMSE,":[155],"as":[156,158],"high":[157],"1.7%":[159],"11%,":[161],"respectively.":[162],"CONCLUSIONS:":[163],"overall":[165],"aim":[166],"work":[169],"show":[172],"representation":[176],"able":[178],"include":[180],"interaction":[183],"information":[184],"across":[188],"different":[189],"species.":[190]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
