{"id":"https://openalex.org/W2793022686","doi":"https://doi.org/10.1186/s12859-018-2051-3","title":"FMLRC: Hybrid long read error correction using an FM-index","display_name":"FMLRC: Hybrid long read error correction using an FM-index","publication_year":2018,"publication_date":"2018-02-09","ids":{"openalex":"https://openalex.org/W2793022686","doi":"https://doi.org/10.1186/s12859-018-2051-3","mag":"2793022686","pmid":"https://pubmed.ncbi.nlm.nih.gov/29426289"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2051-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2051-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2051-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2051-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053736401","display_name":"Jeremy Wang","orcid":"https://orcid.org/0000-0002-0673-9418"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jeremy R. Wang","raw_affiliation_strings":["Department of Genetics, University of North Carolina at Chapel Hill, CB 3280, 3144 Genome Sciences Building, 250 Bell Tower Dr, Chapel Hill, 27599, NC, USA. jeremy_wang@med.unc.edu","Department of Genetics, University of North Carolina at Chapel Hill, CB 3280, 3144 Genome Sciences Building, 250 Bell Tower Dr, Chapel Hill, 27599, NC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, University of North Carolina at Chapel Hill, CB 3280, 3144 Genome Sciences Building, 250 Bell Tower Dr, Chapel Hill, 27599, NC, USA. jeremy_wang@med.unc.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Genetics, University of North Carolina at Chapel Hill, CB 3280, 3144 Genome Sciences Building, 250 Bell Tower Dr, Chapel Hill, 27599, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071742303","display_name":"James Holt","orcid":"https://orcid.org/0000-0001-6411-9236"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Holt","raw_affiliation_strings":["Department of Computer Science, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042463953","display_name":"Leonard McMillan","orcid":"https://orcid.org/0000-0002-8453-0847"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leonard McMillan","raw_affiliation_strings":["Department of Computer Science, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091112024","display_name":"Corbin D. Jones","orcid":"https://orcid.org/0000-0001-7281-7130"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Corbin D. Jones","raw_affiliation_strings":["Department of Biology and Integrative Program for Biological and Genome Sciences, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology and Integrative Program for Biological and Genome Sciences, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5053736401"],"corresponding_institution_ids":["https://openalex.org/I114027177"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":7.7929,"has_fulltext":true,"cited_by_count":171,"citation_normalized_percentile":{"value":0.98220301,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"19","issue":"1","first_page":"50","last_page":"50"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.968999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.968999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.014800000004470348,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.002400000113993883,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7379100918769836},{"id":"https://openalex.org/keywords/k-mer","display_name":"k-mer","score":0.6220107674598694},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.6152477264404297},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.6090001463890076},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5578867197036743},{"id":"https://openalex.org/keywords/error-detection-and-correction","display_name":"Error detection and correction","score":0.5508673787117004},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.5248525142669678},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5054748058319092},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4502604603767395},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.4404744505882263},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3889896869659424},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35416126251220703},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3212900757789612},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1493816375732422},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11548075079917908},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10046786069869995},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.08044826984405518}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7379100918769836},{"id":"https://openalex.org/C2279292","wikidata":"https://www.wikidata.org/wiki/Q6322851","display_name":"k-mer","level":4,"score":0.6220107674598694},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.6152477264404297},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.6090001463890076},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5578867197036743},{"id":"https://openalex.org/C103088060","wikidata":"https://www.wikidata.org/wiki/Q1062839","display_name":"Error detection and correction","level":2,"score":0.5508673787117004},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.5248525142669678},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5054748058319092},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4502604603767395},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4404744505882263},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3889896869659424},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35416126251220703},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3212900757789612},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1493816375732422},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11548075079917908},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10046786069869995},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.08044826984405518},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-018-2051-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2051-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2051-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29426289","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29426289","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:cdr.lib.unc.edu:uuid:beefc52d-3b6e-4785-8545-eb92df228c05","is_oa":false,"landing_page_url":"https://cdr.lib.unc.edu/record/uuid:beefc52d-3b6e-4785-8545-eb92df228c05","pdf_url":null,"source":{"id":"https://openalex.org/S4306401075","display_name":"Carolina Digital Repository (University of North Carolina at Chapel Hill)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114027177","host_organization_name":"University of North Carolina at Chapel Hill","host_organization_lineage":["https://openalex.org/I114027177"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:66b022e366b14f87b35a8b95e1fc3194","is_oa":true,"landing_page_url":"https://doaj.org/article/66b022e366b14f87b35a8b95e1fc3194","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-11 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4722558","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5807796","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2051-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2051-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2051-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.47999998927116394,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G193552981","display_name":null,"funder_award_id":"GM076468","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2610731052","display_name":null,"funder_award_id":"P50 GM076468","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2966645011","display_name":null,"funder_award_id":"T32DK007737-17S1","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G3333285807","display_name":null,"funder_award_id":"2013-MRG-1110","funder_id":"https://openalex.org/F4320308571","funder_display_name":"North Carolina Biotechnology Center"},{"id":"https://openalex.org/G4390351951","display_name":null,"funder_award_id":"T32DK007737","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G477917612","display_name":null,"funder_award_id":"DEB-1457707","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5948482962","display_name":null,"funder_award_id":"P50 GM076468","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7092033309","display_name":null,"funder_award_id":"1457707","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G818873965","display_name":null,"funder_award_id":"T32DK007737","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320308571","display_name":"North Carolina Biotechnology Center","ror":"https://ror.org/03hj4jr80"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2793022686.pdf","grobid_xml":"https://content.openalex.org/works/W2793022686.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W9498632","https://openalex.org/W77861361","https://openalex.org/W1519765314","https://openalex.org/W1579534339","https://openalex.org/W1778776476","https://openalex.org/W1822485921","https://openalex.org/W1983403167","https://openalex.org/W2013697960","https://openalex.org/W2041126213","https://openalex.org/W2046137036","https://openalex.org/W2052454900","https://openalex.org/W2100673218","https://openalex.org/W2101250487","https://openalex.org/W2107772251","https://openalex.org/W2110145781","https://openalex.org/W2137759177","https://openalex.org/W2157888653","https://openalex.org/W2160177274","https://openalex.org/W2161488606","https://openalex.org/W2167826782","https://openalex.org/W2179507357","https://openalex.org/W2189047836","https://openalex.org/W2194172909","https://openalex.org/W2210193708","https://openalex.org/W2340761128","https://openalex.org/W2346241034","https://openalex.org/W2397469828","https://openalex.org/W2518374209","https://openalex.org/W2592570088","https://openalex.org/W3099661149","https://openalex.org/W4233459951","https://openalex.org/W6603115422"],"related_works":["https://openalex.org/W4210830088","https://openalex.org/W2484133401","https://openalex.org/W2115501618","https://openalex.org/W3011183076","https://openalex.org/W2794893153","https://openalex.org/W2721624558","https://openalex.org/W2079322808","https://openalex.org/W2767590279","https://openalex.org/W2619753084","https://openalex.org/W3090794301"],"abstract_inverted_index":{"BACKGROUND:":[0],"Long":[1],"read":[2,23,26,98,155,198],"sequencing":[3,199],"is":[4,53],"changing":[5],"the":[6,16,30,38,56,178],"landscape":[7],"of":[8,34,42,103,167,177],"genomic":[9],"research,":[10],"especially":[11],"de":[12,145,180],"novo":[13,146,181],"assembly.":[14],"Despite":[15],"high":[17,116],"error":[18],"rate":[19],"inherent":[20],"to":[21,48,54,60,93],"long":[22,70,97,154,169,197],"technologies,":[24],"increased":[25],"lengths":[27],"dramatically":[28],"improve":[29],"continuity":[31],"and":[32,40,58,74,142,171,185],"accuracy":[33],"genome":[35],"assemblies.":[36,182],"However,":[37],"cost":[39,57],"throughput":[41,166,184],"these":[43],"technologies":[44],"limits":[45],"their":[46],"application":[47],"complex":[49],"genomes.":[50],"One":[51],"solution":[52],"decrease":[55],"time":[59],"assemble":[61],"novel":[62,83],"genomes":[63],"by":[64],"leveraging":[65,85],"\"hybrid\"":[66],"assemblies":[67],"that":[68,109,128],"use":[69],"reads":[71,76,170],"for":[72,77],"scaffolding":[73],"short":[75,105,160],"accuracy.":[78],"RESULTS:":[79],"We":[80,107,125,162],"describe":[81],"a":[82,86,101,172],"method":[84,111,130,151],"multi-string":[87],"Burrows-Wheeler":[88],"Transform":[89],"with":[90],"auxiliary":[91],"FM-index":[92],"correct":[94],"errors":[95],"in":[96,135,175],"sequences":[99],"using":[100,158],"set":[102],"complementary":[104,159],"reads.":[106,161],"demonstrate":[108,163],"our":[110,129],"efficiently":[112],"produces":[113,131],"significantly":[114],"more":[115,132],"quality":[117],"corrected":[118,168],"sequence":[119,156],"than":[120,138,188],"existing":[121,139,189],"hybrid":[122,141],"error-correction":[123],"methods.":[124,148],"also":[126],"show":[127],"contiguous":[133],"assemblies,":[134],"many":[136],"cases,":[137],"state-of-the-art":[140],"long-read":[143],"only":[144],"assembly":[147],"CONCLUSION:":[149],"Our":[150],"accurately":[152],"corrects":[153],"data":[157],"higher":[164],"total":[165],"corresponding":[173],"increase":[174],"contiguity":[176],"resulting":[179],"Improved":[183],"computational":[186],"efficiency":[187],"methods":[190],"will":[191],"help":[192],"better":[193],"economically":[194],"utilize":[195],"emerging":[196],"technologies.":[200]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":27},{"year":2023,"cited_by_count":24},{"year":2022,"cited_by_count":19},{"year":2021,"cited_by_count":39},{"year":2020,"cited_by_count":31},{"year":2019,"cited_by_count":14}],"updated_date":"2026-05-31T08:46:17.908082","created_date":"2025-10-10T00:00:00"}