{"id":"https://openalex.org/W2751687080","doi":"https://doi.org/10.1186/s12859-018-2033-5","title":"Phylogenetic convolutional neural networks in metagenomics","display_name":"Phylogenetic convolutional neural networks in metagenomics","publication_year":2018,"publication_date":"2018-03-01","ids":{"openalex":"https://openalex.org/W2751687080","doi":"https://doi.org/10.1186/s12859-018-2033-5","mag":"2751687080","pmid":"https://pubmed.ncbi.nlm.nih.gov/29536822"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2033-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2033-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2033-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2033-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079164551","display_name":"Diego Fioravanti","orcid":null},"institutions":[{"id":"https://openalex.org/I4210135521","display_name":"Max Planck Institute for Intelligent Systems","ror":"https://ror.org/04fq9j139","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210135521"]},{"id":"https://openalex.org/I2277624104","display_name":"Fondazione Bruno Kessler","ror":"https://ror.org/01j33xk10","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2277624104"]}],"countries":["DE","IT"],"is_corresponding":true,"raw_author_name":"Diego Fioravanti","raw_affiliation_strings":["Fondazione Bruno Kessler (FBK), Via Sommarive 18 Povo, Trento, I-38123, Italy","Max Planck Institute for Intelligent Systems, Spemannstra\u00dfe 34, T\u00fcbingen, 72076, Germany","Fondazione Bruno Kessler (FBK), Trento, Italy","Max Planck Institute for Intelligent Systems, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"Fondazione Bruno Kessler (FBK), Via Sommarive 18 Povo, Trento, I-38123, Italy","institution_ids":["https://openalex.org/I2277624104"]},{"raw_affiliation_string":"Max Planck Institute for Intelligent Systems, Spemannstra\u00dfe 34, T\u00fcbingen, 72076, Germany","institution_ids":["https://openalex.org/I4210135521"]},{"raw_affiliation_string":"Fondazione Bruno Kessler (FBK), Trento, Italy","institution_ids":["https://openalex.org/I2277624104"]},{"raw_affiliation_string":"Max Planck Institute for Intelligent Systems, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210135521"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087341987","display_name":"Ylenia Giarratano","orcid":"https://orcid.org/0000-0002-1301-0879"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ylenia Giarratano","raw_affiliation_strings":["Centre for Medical Informatics, Usher Institute, University of Edinburgh, 9 Little France Road, Edinburgh, EH16 4UX, UK","Centre for Medical Informatics, Usher Institute, University of Edinburgh, Edinburgh, UK"],"affiliations":[{"raw_affiliation_string":"Centre for Medical Informatics, Usher Institute, University of Edinburgh, 9 Little France Road, Edinburgh, EH16 4UX, UK","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"Centre for Medical Informatics, Usher Institute, University of Edinburgh, Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044988615","display_name":"Valerio Maggio","orcid":"https://orcid.org/0000-0003-4824-893X"},"institutions":[{"id":"https://openalex.org/I2277624104","display_name":"Fondazione Bruno Kessler","ror":"https://ror.org/01j33xk10","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2277624104"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Valerio Maggio","raw_affiliation_strings":["Fondazione Bruno Kessler (FBK), Via Sommarive 18 Povo, Trento, I-38123, Italy",", Fondazione Bruno Kessler (FBK), Trento, Italy"],"affiliations":[{"raw_affiliation_string":"Fondazione Bruno Kessler (FBK), Via Sommarive 18 Povo, Trento, I-38123, Italy","institution_ids":["https://openalex.org/I2277624104"]},{"raw_affiliation_string":", Fondazione Bruno Kessler (FBK), Trento, Italy","institution_ids":["https://openalex.org/I2277624104"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022988784","display_name":"Claudio Agostinelli","orcid":"https://orcid.org/0000-0001-6702-4312"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Claudio Agostinelli","raw_affiliation_strings":["Department of Mathematics, University of Trento, Via Sommarive 14 Povo, Trento, I-38123, Italy","Department of Mathematics, University of Trento, Trento, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Trento, Via Sommarive 14 Povo, Trento, I-38123, Italy","institution_ids":["https://openalex.org/I193223587"]},{"raw_affiliation_string":"Department of Mathematics, University of Trento, Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070937671","display_name":"Marco Chierici","orcid":"https://orcid.org/0000-0001-9791-9301"},"institutions":[{"id":"https://openalex.org/I2277624104","display_name":"Fondazione Bruno Kessler","ror":"https://ror.org/01j33xk10","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2277624104"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Chierici","raw_affiliation_strings":["Fondazione Bruno Kessler (FBK), Via Sommarive 18 Povo, Trento, I-38123, Italy",", Fondazione Bruno Kessler (FBK), Trento, Italy"],"affiliations":[{"raw_affiliation_string":"Fondazione Bruno Kessler (FBK), Via Sommarive 18 Povo, Trento, I-38123, Italy","institution_ids":["https://openalex.org/I2277624104"]},{"raw_affiliation_string":", Fondazione Bruno Kessler (FBK), Trento, Italy","institution_ids":["https://openalex.org/I2277624104"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090829168","display_name":"Giuseppe Jurman","orcid":"https://orcid.org/0000-0002-2705-5728"},"institutions":[{"id":"https://openalex.org/I2277624104","display_name":"Fondazione Bruno Kessler","ror":"https://ror.org/01j33xk10","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2277624104"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giuseppe Jurman","raw_affiliation_strings":["Fondazione Bruno Kessler (FBK), Via Sommarive 18 Povo, Trento, I-38123, Italy. jurman@fbk.eu",", Fondazione Bruno Kessler (FBK), Trento, Italy"],"affiliations":[{"raw_affiliation_string":"Fondazione Bruno Kessler (FBK), Via Sommarive 18 Povo, Trento, I-38123, Italy. jurman@fbk.eu","institution_ids":[]},{"raw_affiliation_string":", Fondazione Bruno Kessler (FBK), Trento, Italy","institution_ids":["https://openalex.org/I2277624104"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072609433","display_name":"Cesare Furlanello","orcid":"https://orcid.org/0000-0002-5384-3605"},"institutions":[{"id":"https://openalex.org/I2277624104","display_name":"Fondazione Bruno Kessler","ror":"https://ror.org/01j33xk10","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2277624104"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Cesare Furlanello","raw_affiliation_strings":["Fondazione Bruno Kessler (FBK), Via Sommarive 18 Povo, Trento, I-38123, Italy",", Fondazione Bruno Kessler (FBK), Trento, Italy"],"affiliations":[{"raw_affiliation_string":"Fondazione Bruno Kessler (FBK), Via Sommarive 18 Povo, Trento, I-38123, Italy","institution_ids":["https://openalex.org/I2277624104"]},{"raw_affiliation_string":", Fondazione Bruno Kessler (FBK), Trento, Italy","institution_ids":["https://openalex.org/I2277624104"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5079164551"],"corresponding_institution_ids":["https://openalex.org/I2277624104","https://openalex.org/I4210135521"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.4639,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.62084075,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"19","issue":"S2","first_page":"49","last_page":"49"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9882000088691711,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.7955477833747864},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.7611957788467407},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6730926036834717},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5948599576950073},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5908029675483704},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5046597719192505},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4505506157875061},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4355964660644531},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.4302193522453308},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3573165237903595},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21866074204444885},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20278418064117432}],"concepts":[{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.7955477833747864},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.7611957788467407},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6730926036834717},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5948599576950073},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5908029675483704},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5046597719192505},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4505506157875061},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4355964660644531},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.4302193522453308},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3573165237903595},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21866074204444885},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20278418064117432},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":11,"locations":[{"id":"doi:10.1186/s12859-018-2033-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2033-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2033-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29536822","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29536822","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:arXiv.org:1709.02268","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1709.02268","pdf_url":"https://arxiv.org/pdf/1709.02268","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"mag:2751687080","is_oa":true,"landing_page_url":"http://export.arxiv.org/pdf/1709.02268","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"pmh:oai:doaj.org/article:e149ec0cf6a94911b07e470a41a03c5c","is_oa":true,"landing_page_url":"https://doaj.org/article/e149ec0cf6a94911b07e470a41a03c5c","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss S2, Pp 1-13 (2018)","raw_type":"article"},{"id":"pmh:oai:iris.unitn.it:11572/224510","is_oa":true,"landing_page_url":"https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2033-5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401913","display_name":"Institutional Research Information System (Universit\u00e0 degli Studi di Trento)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193223587","host_organization_name":"University of Trento","host_organization_lineage":["https://openalex.org/I193223587"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5850953","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5850953","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.ed.ac.uk:openaire/a2c84fa2-a3a1-4b78-9d20-bc9e18b0b32f","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/a2c84fa2-a3a1-4b78-9d20-bc9e18b0b32f","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fioravanti, D, Giarratano, Y, Maggio, V, Agostinelli, C, Chierici, M, Jurman, G & Furlanello, C 2018, 'Phylogenetic convolutional neural networks in metagenomics', BMC Bioinformatics, vol. 19, no. Suppl 2, pp. 49. https://doi.org/10.1186/s12859-018-2033-5","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.ed.ac.uk:publications/a2c84fa2-a3a1-4b78-9d20-bc9e18b0b32f","is_oa":true,"landing_page_url":"https://hdl.handle.net/20.500.11820/a2c84fa2-a3a1-4b78-9d20-bc9e18b0b32f","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fioravanti, D, Giarratano, Y, Maggio, V, Agostinelli, C, Chierici, M, Jurman, G & Furlanello, C 2018, 'Phylogenetic convolutional neural networks in metagenomics', BMC Bioinformatics, vol. 19, no. Suppl 2, pp. 49. https://doi.org/10.1186/s12859-018-2033-5","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.mpg.de:item_3049419","is_oa":false,"landing_page_url":"http://hdl.handle.net/21.11116/0000-0003-7608-0","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.48550/arxiv.1709.02268","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1709.02268","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2033-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2033-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2033-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2751687080.pdf","grobid_xml":"https://content.openalex.org/works/W2751687080.grobid-xml"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W1483423256","https://openalex.org/W1488730707","https://openalex.org/W1501213224","https://openalex.org/W1507985183","https://openalex.org/W1554663460","https://openalex.org/W1661405579","https://openalex.org/W1988301066","https://openalex.org/W2021560851","https://openalex.org/W2030154486","https://openalex.org/W2031611770","https://openalex.org/W2044809283","https://openalex.org/W2059185913","https://openalex.org/W2064397275","https://openalex.org/W2072970694","https://openalex.org/W2074405982","https://openalex.org/W2074682976","https://openalex.org/W2076596567","https://openalex.org/W2078112764","https://openalex.org/W2085242400","https://openalex.org/W2091922579","https://openalex.org/W2104318549","https://openalex.org/W2107432340","https://openalex.org/W2109553965","https://openalex.org/W2112796928","https://openalex.org/W2124351063","https://openalex.org/W2125826054","https://openalex.org/W2134892520","https://openalex.org/W2141052558","https://openalex.org/W2141125135","https://openalex.org/W2143777796","https://openalex.org/W2154026962","https://openalex.org/W2165374837","https://openalex.org/W2166325326","https://openalex.org/W2187089797","https://openalex.org/W2253609413","https://openalex.org/W2260815707","https://openalex.org/W2306570595","https://openalex.org/W2311607323","https://openalex.org/W2502949459","https://openalex.org/W2572726383","https://openalex.org/W2581485053","https://openalex.org/W2592144725","https://openalex.org/W2597990875","https://openalex.org/W2613395251","https://openalex.org/W2618245351","https://openalex.org/W2626319399","https://openalex.org/W2740316488","https://openalex.org/W2747111693","https://openalex.org/W2765874769","https://openalex.org/W2773939681","https://openalex.org/W2896965086","https://openalex.org/W2951274106","https://openalex.org/W2964121744","https://openalex.org/W3105332824","https://openalex.org/W4250382110","https://openalex.org/W4299542564","https://openalex.org/W4388297464","https://openalex.org/W6636939093","https://openalex.org/W6675354045","https://openalex.org/W6834473044"],"related_works":["https://openalex.org/W2963776453","https://openalex.org/W2783839263","https://openalex.org/W2840601990","https://openalex.org/W2839601526","https://openalex.org/W2343416635","https://openalex.org/W2507089332","https://openalex.org/W3031121564","https://openalex.org/W2947975283","https://openalex.org/W2725719541","https://openalex.org/W24640360","https://openalex.org/W2901070118","https://openalex.org/W3158632680","https://openalex.org/W2973483023","https://openalex.org/W3106257921","https://openalex.org/W2503066070","https://openalex.org/W2851552677","https://openalex.org/W1850325679","https://openalex.org/W3092530991","https://openalex.org/W2786516067","https://openalex.org/W3084574658"],"abstract_inverted_index":{"Ph-CNN":[0],"represents":[1],"a":[2,20],"novel":[3],"deep":[4],"learning":[5],"approach":[6],"for":[7],"the":[8,14,29,35,39,49,56],"classification":[9],"of":[10,26,42,44,51],"metagenomics":[11],"data.":[12],"Operatively,":[13],"algorithm":[15],"has":[16],"been":[17],"implemented":[18],"as":[19],"custom":[21],"Keras":[22],"layer":[23,32],"taking":[24],"care":[25],"passing":[27],"to":[28,55],"following":[30],"convolutional":[31],"not":[33],"only":[34],"data":[36],"but":[37],"also":[38],"ranked":[40],"list":[41],"neighbourhood":[43],"each":[45],"sample,":[46],"thus":[47],"mimicking":[48],"case":[50],"image":[52],"data,":[53],"transparently":[54],"user.":[57]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
