{"id":"https://openalex.org/W2485599059","doi":"https://doi.org/10.1186/s12859-018-2028-2","title":"Spherical: an iterative workflow for assembling metagenomic datasets","display_name":"Spherical: an iterative workflow for assembling metagenomic datasets","publication_year":2018,"publication_date":"2018-01-23","ids":{"openalex":"https://openalex.org/W2485599059","doi":"https://doi.org/10.1186/s12859-018-2028-2","mag":"2485599059","pmid":"https://pubmed.ncbi.nlm.nih.gov/29361904"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2028-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2028-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2028-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2028-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083660818","display_name":"Thomas C. A. Hitch","orcid":"https://orcid.org/0000-0003-2244-7412"},"institutions":[{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]},{"id":"https://openalex.org/I4210146599","display_name":"Institute of Biological, Environmental and Rural Sciences","ror":"https://ror.org/051wgfj58","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210146599"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Thomas C. A. Hitch","raw_affiliation_strings":["Functional Microbiome Research Group, Institute of Medical Microbiology, Uniklinik RWTH Aachen, Aachen, Germany. thitch@ukaachen.de","Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University, Aberystwyth, Wales, SY23 3FG, UK. thitch@ukaachen.de","Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University, Aberystwyth, Wales, SY23 3FG, UK"],"affiliations":[{"raw_affiliation_string":"Functional Microbiome Research Group, Institute of Medical Microbiology, Uniklinik RWTH Aachen, Aachen, Germany. thitch@ukaachen.de","institution_ids":[]},{"raw_affiliation_string":"Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University, Aberystwyth, Wales, SY23 3FG, UK. thitch@ukaachen.de","institution_ids":[]},{"raw_affiliation_string":"Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University, Aberystwyth, Wales, SY23 3FG, UK","institution_ids":["https://openalex.org/I16038530","https://openalex.org/I4210146599"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061955804","display_name":"Christopher J. Creevey","orcid":"https://orcid.org/0000-0001-7183-1555"},"institutions":[{"id":"https://openalex.org/I4210146599","display_name":"Institute of Biological, Environmental and Rural Sciences","ror":"https://ror.org/051wgfj58","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210146599"]},{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christopher J. Creevey","raw_affiliation_strings":["Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University, Aberystwyth, Wales, SY23 3FG, UK"],"affiliations":[{"raw_affiliation_string":"Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University, Aberystwyth, Wales, SY23 3FG, UK","institution_ids":["https://openalex.org/I16038530","https://openalex.org/I4210146599"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5083660818"],"corresponding_institution_ids":["https://openalex.org/I16038530","https://openalex.org/I4210146599"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.5584,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.64812836,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"19","issue":"1","first_page":"20","last_page":"20"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8492628335952759},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8207571506500244},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6795777678489685},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6609783172607422},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.5810869932174683},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5644112825393677},{"id":"https://openalex.org/keywords/human-microbiome-project","display_name":"Human Microbiome Project","score":0.5615376830101013},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.5234639048576355},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5016114711761475},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4609549343585968},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.4131779074668884},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39905989170074463},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.38190189003944397},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2832273542881012},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.27038633823394775},{"id":"https://openalex.org/keywords/human-microbiome","display_name":"Human microbiome","score":0.24262544512748718},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1529465913772583},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13630002737045288},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10351014137268066}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8492628335952759},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8207571506500244},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6795777678489685},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6609783172607422},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.5810869932174683},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5644112825393677},{"id":"https://openalex.org/C190944805","wikidata":"https://www.wikidata.org/wiki/Q3922751","display_name":"Human Microbiome Project","level":4,"score":0.5615376830101013},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.5234639048576355},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5016114711761475},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4609549343585968},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.4131779074668884},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39905989170074463},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.38190189003944397},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2832273542881012},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.27038633823394775},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.24262544512748718},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1529465913772583},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13630002737045288},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10351014137268066},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002432","descriptor_name":"Cecum","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D002432","descriptor_name":"Cecum","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D002432","descriptor_name":"Cecum","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060587","descriptor_name":"Groundwater","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D060587","descriptor_name":"Groundwater","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D060587","descriptor_name":"Groundwater","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1186/s12859-018-2028-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2028-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2028-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29361904","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29361904","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5781261","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5781261","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:aber.ac.uk:publications/05ef314c-3773-4507-8dc4-dd3d0bbf8b75","is_oa":true,"landing_page_url":null,"pdf_url":"https://pure.aber.ac.uk/portal/en/publications/spherical(05ef314c-3773-4507-8dc4-dd3d0bbf8b75).html","source":{"id":"https://openalex.org/S4306401660","display_name":"Aberystwyth Research portal (Aberystwyth University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I16038530","host_organization_name":"Aberystwyth University","host_organization_lineage":["https://openalex.org/I16038530"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:doaj.org/article:39b173b0f2fd4324a09a6769e48003b1","is_oa":true,"landing_page_url":"https://doaj.org/article/39b173b0f2fd4324a09a6769e48003b1","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-8 (2018)","raw_type":"article"},{"id":"pmh:oai:publications.rwth-aachen.de:780170","is_oa":true,"landing_page_url":"https://publications.rwth-aachen.de/record/780170","pdf_url":null,"source":{"id":"https://openalex.org/S4306401033","display_name":"RWTH Publications (RWTH Aachen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887968799","host_organization_name":"RWTH Aachen University","host_organization_lineage":["https://openalex.org/I887968799"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC bioinformatics 19(1), 20 (2018). doi:10.1186/s12859-018-2028-2","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pure.qub.ac.uk/portal:openaire/1e90395e-c9fc-4559-84c6-d9806cfa06a2","is_oa":true,"landing_page_url":"https://pure.qub.ac.uk/en/publications/1e90395e-c9fc-4559-84c6-d9806cfa06a2","pdf_url":null,"source":{"id":"https://openalex.org/S4306402319","display_name":"Research Portal (Queen's University Belfast)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126231945","host_organization_name":"Queen's University Belfast","host_organization_lineage":["https://openalex.org/I126231945"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hitch, T C A & Creevey, C J 2018, 'Spherical: An iterative workflow for assembling metagenomic datasets', BMC Bioinformatics, vol. 19, 20. https://doi.org/10.1186/s12859-018-2028-2","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.qub.ac.uk/portal:publications/1e90395e-c9fc-4559-84c6-d9806cfa06a2","is_oa":true,"landing_page_url":"http://www.scopus.com/inward/record.url?scp=85043483900&partnerID=8YFLogxK","pdf_url":null,"source":{"id":"https://openalex.org/S4306402319","display_name":"Research Portal (Queen's University Belfast)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126231945","host_organization_name":"Queen's University Belfast","host_organization_lineage":["https://openalex.org/I126231945"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hitch , T C A &amp; Creevey , C J 2018 , ' Spherical: An iterative workflow for assembling metagenomic datasets ' , BMC Bioinformatics , vol. 19 , 20 . https://doi.org/10.1186/s12859-018-2028-2","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2028-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2028-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2028-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3170876200","display_name":null,"funder_award_id":"BBS/OS/GC/000011B","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G334535252","display_name":null,"funder_award_id":"BB/E/W/10964A01","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2485599059.pdf","grobid_xml":"https://content.openalex.org/works/W2485599059.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1850079471","https://openalex.org/W1954100204","https://openalex.org/W1966822396","https://openalex.org/W1978516023","https://openalex.org/W1989348205","https://openalex.org/W2005188161","https://openalex.org/W2010002522","https://openalex.org/W2041391522","https://openalex.org/W2055043387","https://openalex.org/W2085631282","https://openalex.org/W2088347903","https://openalex.org/W2105067980","https://openalex.org/W2109848222","https://openalex.org/W2113601822","https://openalex.org/W2122210493","https://openalex.org/W2131781913","https://openalex.org/W2134526812","https://openalex.org/W2138071529","https://openalex.org/W2141920662","https://openalex.org/W2148181108","https://openalex.org/W2148213464","https://openalex.org/W2150208009","https://openalex.org/W2154375983","https://openalex.org/W2158390902","https://openalex.org/W2160945762","https://openalex.org/W2161732286","https://openalex.org/W2170324950","https://openalex.org/W2170551349","https://openalex.org/W2565488022","https://openalex.org/W2932683107","https://openalex.org/W2951220983","https://openalex.org/W2951663511","https://openalex.org/W6600125713"],"related_works":["https://openalex.org/W2330186985","https://openalex.org/W2950447380","https://openalex.org/W2345730070","https://openalex.org/W2107854630","https://openalex.org/W4319294554","https://openalex.org/W2089480001","https://openalex.org/W3167837387","https://openalex.org/W2055448750","https://openalex.org/W3134563641","https://openalex.org/W1986608492"],"abstract_inverted_index":{"We":[0],"demonstrate":[1],"the":[2,15,18,40,46,54,62,74,94],"accuracy":[3],"of":[4,17,31,42,78],"Spherical":[5,38,63,82],"using":[6],"simulated":[7],"data":[8],"based":[9],"on":[10],"completely":[11],"sequenced":[12],"genomes":[13],"and":[14,88,99],"effectiveness":[16],"workflow":[19,64],"at":[20],"retrieving":[21],"lost":[22],"information":[23],"for":[24,91],"taxa":[25],"in":[26,45,66,73,85],"three":[27],"published":[28],"metagenomics":[29],"studies":[30],"varying":[32],"sizes.":[33],"Our":[34],"results":[35],"show":[36],"that":[37],"increased":[39],"amount":[41],"reads":[43],"utilized":[44],"assembly":[47],"by":[48,61],"up":[49],"to":[50,53],"109%":[51],"compared":[52],"base":[55],"assembly.":[56],"The":[57],"additional":[58],"contigs":[59],"assembled":[60],"resulted":[65],"a":[67],"significant":[68],"(P":[69],"<":[70],"0.05)":[71],"changes":[72],"predicted":[75],"taxonomic":[76],"profile":[77],"all":[79],"datasets":[80],"analysed.":[81],"is":[83,101],"implemented":[84],"Python":[86],"2.7":[87],"freely":[89],"available":[90],"use":[92],"under":[93],"MIT":[95],"license.":[96],"Source":[97],"code":[98],"documentation":[100],"hosted":[102],"publically":[103],"at:":[104],"https://github.com/thh32/Spherical":[105],".":[106]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}