{"id":"https://openalex.org/W2786738307","doi":"https://doi.org/10.1186/s12859-018-2021-9","title":"LocText: relation extraction of protein localizations to assist database curation","display_name":"LocText: relation extraction of protein localizations to assist database curation","publication_year":2018,"publication_date":"2018-01-17","ids":{"openalex":"https://openalex.org/W2786738307","doi":"https://doi.org/10.1186/s12859-018-2021-9","mag":"2786738307","pmid":"https://pubmed.ncbi.nlm.nih.gov/29343218"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2021-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2021-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2021-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2021-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052162892","display_name":"Juan Miguel Cejuela","orcid":"https://orcid.org/0000-0001-9588-984X"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Juan Miguel Cejuela","raw_affiliation_strings":["Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Boltzmannstr. 3, Garching, 85748, Germany. loctext@rostlab.org","Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Garching, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Boltzmannstr. 3, Garching, 85748, Germany. loctext@rostlab.org","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027119814","display_name":"Shrikant Vinchurkar","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099966","display_name":"Microsoft (Denmark)","ror":"https://ror.org/015drfm81","country_code":"DK","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4210099966"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Shrikant Vinchurkar","raw_affiliation_strings":["Microsoft, Microsoft Development Center Copenhagen, Kanalvej 7, Kongens Lyngby, 2800, Denmark","Microsoft, Microsoft Development Center Copenhagen, Kongens Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Microsoft, Microsoft Development Center Copenhagen, Kanalvej 7, Kongens Lyngby, 2800, Denmark","institution_ids":["https://openalex.org/I4210099966"]},{"raw_affiliation_string":"Microsoft, Microsoft Development Center Copenhagen, Kongens Lyngby, Denmark","institution_ids":["https://openalex.org/I4210099966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108748492","display_name":"Tatyana Goldberg","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tatyana Goldberg","raw_affiliation_strings":["Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Boltzmannstr. 3, Garching, 85748, Germany","Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Garching, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Boltzmannstr. 3, Garching, 85748, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007100525","display_name":"Madhukar Sollepura Prabhu Shankar","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Madhukar Sollepura Prabhu Shankar","raw_affiliation_strings":["Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Boltzmannstr. 3, Garching, 85748, Germany","Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Garching, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Boltzmannstr. 3, Garching, 85748, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069615521","display_name":"Ashish Baghudana","orcid":null},"institutions":[{"id":"https://openalex.org/I4210148827","display_name":"Birla Institute of Technology and Science, Pilani - Goa Campus","ror":"https://ror.org/046sh6j17","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210148827","https://openalex.org/I74796645"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Ashish Baghudana","raw_affiliation_strings":["Department of Computer Science and Information Systems, Birla Institute of Technology and Science K. K. Birla Goa Campus, Zuarinagar, 403726, Goa, India","Department of Computer Science and Information Systems, Birla Institute of Technology and Science K. K. Birla Goa Campus, Zuarinagar, India"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Systems, Birla Institute of Technology and Science K. K. Birla Goa Campus, Zuarinagar, 403726, Goa, India","institution_ids":["https://openalex.org/I4210148827"]},{"raw_affiliation_string":"Department of Computer Science and Information Systems, Birla Institute of Technology and Science K. K. Birla Goa Campus, Zuarinagar, India","institution_ids":["https://openalex.org/I4210148827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058887708","display_name":"Aleksandar Bojchevski","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Aleksandar Bojchevski","raw_affiliation_strings":["Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Boltzmannstr. 3, Garching, 85748, Germany","Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Garching, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Boltzmannstr. 3, Garching, 85748, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041432638","display_name":"Carsten Uhlig","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Carsten Uhlig","raw_affiliation_strings":["Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Boltzmannstr. 3, Garching, 85748, Germany","Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Garching, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Boltzmannstr. 3, Garching, 85748, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014738245","display_name":"Andr\u00e9 Ofner","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andr\u00e9 Ofner","raw_affiliation_strings":["Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Boltzmannstr. 3, Garching, 85748, Germany","Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Garching, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Boltzmannstr. 3, Garching, 85748, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021823722","display_name":"Pandu Raharja-Liu","orcid":"https://orcid.org/0000-0001-6707-6278"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Pandu Raharja-Liu","raw_affiliation_strings":["Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Boltzmannstr. 3, Garching, 85748, Germany","Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Garching, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Boltzmannstr. 3, Garching, 85748, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005772961","display_name":"Lars Juhl Jensen","orcid":"https://orcid.org/0000-0001-7885-715X"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Lars Juhl Jensen","raw_affiliation_strings":["Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen N, 2200, Denmark. lars.juhl.jensen@cpr.ku.dk","Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen N, Denmark"],"affiliations":[{"raw_affiliation_string":"Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen N, 2200, Denmark. lars.juhl.jensen@cpr.ku.dk","institution_ids":["https://openalex.org/I2801134892"]},{"raw_affiliation_string":"Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen N, Denmark","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I124055696"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064905883","display_name":"Burkhard Rost","orcid":"https://orcid.org/0000-0003-0179-8424"},"institutions":[{"id":"https://openalex.org/I309496635","display_name":"Weihenstephan-Triesdorf University of Applied Sciences","ror":"https://ror.org/00gzkxz88","country_code":"DE","type":"education","lineage":["https://openalex.org/I309496635"]},{"id":"https://openalex.org/I4210096322","display_name":"New York Structural Biology Center","ror":"https://ror.org/00new7409","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210096322"]},{"id":"https://openalex.org/I4210137766","display_name":"Institute for Advanced Study","ror":"https://ror.org/03xg85719","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210137766"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Burkhard Rost","raw_affiliation_strings":["Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Boltzmannstr. 3, Garching, 85748, Germany. rost@rostlab.org","Columbia University, Department of Biochemistry and Molecular Biophysics, Columbia University, New York, USA. rost@rostlab.org","Institute for Advanced Study (TUM-IAS), Lichtenbergstr. 2a, Garching/Munich, 85748, Germany. rost@rostlab.org","New York Consortium on Membrane Protein Structure (NYCOMPS), 701 West, 168th Street, New York, 10032, NY, USA. rost@rostlab.org","TUM School of Life Sciences Weihenstephan (WZW), Alte Akademie 8, Freising, Germany. rost@rostlab.org","New York Consortium on Membrane Protein Structure (NYCOMPS), New York, USA","Institute for Advanced Study (TUM-IAS), Garching/Munich, Germany","Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Garching, Germany","TUM School of Life Sciences Weihenstephan (WZW), Freising, Germany","Columbia University, Department of Biochemistry and Molecular Biophysics, Columbia University, New York, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Boltzmannstr. 3, Garching, 85748, Germany. rost@rostlab.org","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Columbia University, Department of Biochemistry and Molecular Biophysics, Columbia University, New York, USA. rost@rostlab.org","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Institute for Advanced Study (TUM-IAS), Lichtenbergstr. 2a, Garching/Munich, 85748, Germany. rost@rostlab.org","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"New York Consortium on Membrane Protein Structure (NYCOMPS), 701 West, 168th Street, New York, 10032, NY, USA. rost@rostlab.org","institution_ids":["https://openalex.org/I4210096322"]},{"raw_affiliation_string":"TUM School of Life Sciences Weihenstephan (WZW), Alte Akademie 8, Freising, Germany. rost@rostlab.org","institution_ids":["https://openalex.org/I309496635"]},{"raw_affiliation_string":"New York Consortium on Membrane Protein Structure (NYCOMPS), New York, USA","institution_ids":["https://openalex.org/I4210096322"]},{"raw_affiliation_string":"Institute for Advanced Study (TUM-IAS), Garching/Munich, Germany","institution_ids":["https://openalex.org/I4210137766"]},{"raw_affiliation_string":"Bioinformatics & Computational Biology, Department of Informatics, Technical University of Munich (TUM), Garching, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"TUM School of Life Sciences Weihenstephan (WZW), Freising, Germany","institution_ids":["https://openalex.org/I309496635"]},{"raw_affiliation_string":"Columbia University, Department of Biochemistry and Molecular Biophysics, Columbia University, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5005772961","https://openalex.org/A5052162892","https://openalex.org/A5064905883"],"corresponding_institution_ids":["https://openalex.org/I124055696","https://openalex.org/I2801134892","https://openalex.org/I309496635","https://openalex.org/I4210096322","https://openalex.org/I4210137766","https://openalex.org/I62916508","https://openalex.org/I78577930"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1661,"currency":"EUR","value_usd":1791},"fwci":6.1436,"has_fulltext":true,"cited_by_count":177,"citation_normalized_percentile":{"value":0.97335371,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"19","issue":"1","first_page":"15","last_page":"15"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9824000000953674,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5531703233718872},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.5522767901420593},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5206050872802734},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.5149458050727844},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4804948568344116},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.47142428159713745},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.42228057980537415},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3608732223510742},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3447232246398926},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3410966396331787},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1603144407272339},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06678426265716553}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5531703233718872},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.5522767901420593},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5206050872802734},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.5149458050727844},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4804948568344116},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.47142428159713745},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.42228057980537415},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3608732223510742},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3447232246398926},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3410966396331787},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1603144407272339},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06678426265716553},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-018-2021-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2021-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2021-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29343218","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29343218","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:3a1c2e23a62d4f488c9dd3664107f711","is_oa":true,"landing_page_url":"https://doaj.org/article/3a1c2e23a62d4f488c9dd3664107f711","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-11 (2018)","raw_type":"article"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1485633","is_oa":true,"landing_page_url":"http://mediatum.ub.tum.de/node?id=1485633","pdf_url":null,"source":{"id":"https://openalex.org/S4377196330","display_name":"mediaTUM  (Technical University of Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5773052","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5773052","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/c0ba217e-3b3a-4b88-9b5e-8ed828ff4e2a","is_oa":true,"landing_page_url":"https://curis.ku.dk/portal/da/publications/loctext(c0ba217e-3b3a-4b88-9b5e-8ed828ff4e2a).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Cejuela , J M , Vinchurkar , S , Goldberg , T , Prabhu Shankar , M S , Baghudana , A , Bojchevski , A , Uhlig , C , Ofner , A , Raharja-Liu , P , Jensen , L J & Rost , B 2018 , ' LocText : relation extraction of protein localizations to assist database curation ' , BMC Bioinformatics , vol. 19 , 15 , pp. 1-11 . https://doi.org/10.1186/s12859-018-2021-9","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2021-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2021-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2021-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.49000000953674316,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G4282887365","display_name":null,"funder_award_id":"NNF14CC0001","funder_id":"https://openalex.org/F4320322436","funder_display_name":"Novo Nordisk"},{"id":"https://openalex.org/G6052429835","display_name":null,"funder_award_id":"(DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6662978750","display_name":null,"funder_award_id":"NNF14CC0001","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G7031468586","display_name":null,"funder_award_id":"NNF14CC000","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G996161988","display_name":null,"funder_award_id":"14CC0001","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"}],"funders":[{"id":"https://openalex.org/F4320308269","display_name":"Alexander von Humboldt-Stiftung","ror":"https://ror.org/012kf4317"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320322436","display_name":"Novo Nordisk","ror":"https://ror.org/0435rc536"},{"id":"https://openalex.org/F4320323383","display_name":"Technische Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/02kkvpp62"},{"id":"https://openalex.org/F4320325957","display_name":"Novo Nordisk Fonden","ror":"https://ror.org/04txyc737"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2786738307.pdf","grobid_xml":"https://content.openalex.org/works/W2786738307.grobid-xml"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W154351976","https://openalex.org/W224064951","https://openalex.org/W1850427468","https://openalex.org/W1973253766","https://openalex.org/W2003144438","https://openalex.org/W2004915807","https://openalex.org/W2011793809","https://openalex.org/W2032566933","https://openalex.org/W2053673723","https://openalex.org/W2068948802","https://openalex.org/W2075655036","https://openalex.org/W2093723065","https://openalex.org/W2094201044","https://openalex.org/W2094344445","https://openalex.org/W2096173332","https://openalex.org/W2100821802","https://openalex.org/W2101234009","https://openalex.org/W2103017472","https://openalex.org/W2103132055","https://openalex.org/W2107008379","https://openalex.org/W2108059661","https://openalex.org/W2108206279","https://openalex.org/W2112227057","https://openalex.org/W2115150863","https://openalex.org/W2115746733","https://openalex.org/W2119821739","https://openalex.org/W2121048111","https://openalex.org/W2121869529","https://openalex.org/W2124767801","https://openalex.org/W2127546476","https://openalex.org/W2127713198","https://openalex.org/W2143801201","https://openalex.org/W2144981148","https://openalex.org/W2146486983","https://openalex.org/W2150850055","https://openalex.org/W2151790371","https://openalex.org/W2152441639","https://openalex.org/W2153635508","https://openalex.org/W2154139219","https://openalex.org/W2158173168","https://openalex.org/W2159335058","https://openalex.org/W2162792752","https://openalex.org/W2164620224","https://openalex.org/W2166240318","https://openalex.org/W2171374484","https://openalex.org/W2297410224","https://openalex.org/W2326694331","https://openalex.org/W2331384579","https://openalex.org/W2472351724","https://openalex.org/W2516150684","https://openalex.org/W2545753590","https://openalex.org/W2566825588","https://openalex.org/W2588444726","https://openalex.org/W2914431807","https://openalex.org/W2914463643","https://openalex.org/W2914782308","https://openalex.org/W4210702584","https://openalex.org/W4239510810","https://openalex.org/W6658704000","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W2976808399","https://openalex.org/W2609844752","https://openalex.org/W4392969631","https://openalex.org/W4285246823","https://openalex.org/W4226278302","https://openalex.org/W4221160509","https://openalex.org/W2547211086","https://openalex.org/W2538200646","https://openalex.org/W1968988659","https://openalex.org/W2888033806"],"abstract_inverted_index":{"LocText":[0],"provides":[1],"a":[2],"cost-effective,":[3],"semi-automated":[4],"workflow":[5],"to":[6,26],"assist":[7],"database":[8],"curators":[9],"in":[10],"identifying":[11],"novel":[12],"protein":[13],"localization":[14],"annotations.":[15],"The":[16],"annotations":[17],"suggested":[18],"through":[19],"text-mining":[20],"would":[21],"be":[22],"verified":[23],"by":[24],"experts":[25],"guarantee":[27],"high-quality":[28],"standards":[29],"of":[30],"manually-curated":[31],"databases":[32],"such":[33],"as":[34],"Swiss-Prot.":[35]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":27},{"year":2024,"cited_by_count":31},{"year":2023,"cited_by_count":31},{"year":2022,"cited_by_count":18},{"year":2021,"cited_by_count":35},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":16},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
