{"id":"https://openalex.org/W2784948696","doi":"https://doi.org/10.1186/s12859-018-2020-x","title":"SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data","display_name":"SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data","publication_year":2018,"publication_date":"2018-01-26","ids":{"openalex":"https://openalex.org/W2784948696","doi":"https://doi.org/10.1186/s12859-018-2020-x","mag":"2784948696","pmid":"https://pubmed.ncbi.nlm.nih.gov/29373955"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-018-2020-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2020-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2020-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2020-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070518024","display_name":"Roman Prytuliak","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150093","display_name":"Max Planck Institute of Biochemistry","ror":"https://ror.org/04py35477","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210150093"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Roman Prytuliak","raw_affiliation_strings":["Computational Biology Group, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152, Martinsried, Germany","Computational Biology Group, Max Planck Institute of Biochemistry, Martinsried, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Group, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152, Martinsried, Germany","institution_ids":["https://openalex.org/I4210150093"]},{"raw_affiliation_string":"Computational Biology Group, Max Planck Institute of Biochemistry, Martinsried, Germany","institution_ids":["https://openalex.org/I4210150093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013221314","display_name":"Friedhelm Pfeiffer","orcid":"https://orcid.org/0000-0003-4691-3246"},"institutions":[{"id":"https://openalex.org/I4210150093","display_name":"Max Planck Institute of Biochemistry","ror":"https://ror.org/04py35477","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210150093"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Friedhelm Pfeiffer","raw_affiliation_strings":["Computational Biology Group, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152, Martinsried, Germany","Computational Biology Group, Max Planck Institute of Biochemistry, Martinsried, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Group, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152, Martinsried, Germany","institution_ids":["https://openalex.org/I4210150093"]},{"raw_affiliation_string":"Computational Biology Group, Max Planck Institute of Biochemistry, Martinsried, Germany","institution_ids":["https://openalex.org/I4210150093"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026672805","display_name":"Bianca Habermann","orcid":"https://orcid.org/0000-0002-2457-7504"},"institutions":[{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]},{"id":"https://openalex.org/I4210150093","display_name":"Max Planck Institute of Biochemistry","ror":"https://ror.org/04py35477","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210150093"]}],"countries":["DE","FR"],"is_corresponding":true,"raw_author_name":"Bianca Hermine Habermann","raw_affiliation_strings":["Computational Biology Group, Aix-Marseille University & CNRS, Developmental Biology Institute of Marseille (IBDM), UMR 7288, Parc Scientifique de Luminy, 163 Avenue de Luminy, 13009, Marseille, France. bianca.habermann@univ-amu.fr","Computational Biology Group, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152, Martinsried, Germany. bianca.habermann@univ-amu.fr","Computational Biology Group, Aix-Marseille University & CNRS, Developmental Biology Institute of Marseille (IBDM), UMR 7288, Marseille, France","Computational Biology Group, Max Planck Institute of Biochemistry, Martinsried, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Group, Aix-Marseille University & CNRS, Developmental Biology Institute of Marseille (IBDM), UMR 7288, Parc Scientifique de Luminy, 163 Avenue de Luminy, 13009, Marseille, France. bianca.habermann@univ-amu.fr","institution_ids":[]},{"raw_affiliation_string":"Computational Biology Group, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152, Martinsried, Germany. bianca.habermann@univ-amu.fr","institution_ids":[]},{"raw_affiliation_string":"Computational Biology Group, Aix-Marseille University & CNRS, Developmental Biology Institute of Marseille (IBDM), UMR 7288, Marseille, France","institution_ids":["https://openalex.org/I4210120427","https://openalex.org/I21491767","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Computational Biology Group, Max Planck Institute of Biochemistry, Martinsried, Germany","institution_ids":["https://openalex.org/I4210150093"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5026672805"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210120427","https://openalex.org/I4210150093"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":2160,"currency":"EUR","value_usd":2329},"fwci":0.2784,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.55942123,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"19","issue":"1","first_page":"24","last_page":"24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.1177000030875206,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.1177000030875206,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.1103999987244606,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.10819999873638153,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.7289696931838989},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6813902258872986},{"id":"https://openalex.org/keywords/series","display_name":"Series (stratigraphy)","score":0.6401095986366272},{"id":"https://openalex.org/keywords/time-series","display_name":"Time series","score":0.5226849317550659},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5148467421531677},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.47925901412963867},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.46347886323928833},{"id":"https://openalex.org/keywords/statistical-analysis","display_name":"Statistical analysis","score":0.45333582162857056},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4383958578109741},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.2794318199157715},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24556812644004822},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22562801837921143},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18915489315986633},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.1251181662082672},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06955337524414062}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.7289696931838989},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6813902258872986},{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.6401095986366272},{"id":"https://openalex.org/C151406439","wikidata":"https://www.wikidata.org/wiki/Q186588","display_name":"Time series","level":2,"score":0.5226849317550659},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5148467421531677},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.47925901412963867},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.46347886323928833},{"id":"https://openalex.org/C2986587452","wikidata":"https://www.wikidata.org/wiki/Q938438","display_name":"Statistical analysis","level":2,"score":0.45333582162857056},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4383958578109741},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.2794318199157715},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24556812644004822},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22562801837921143},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18915489315986633},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.1251181662082672},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06955337524414062},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12859-018-2020-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2020-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2020-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29373955","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29373955","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-02066103v1","is_oa":true,"landing_page_url":"https://hal.science/hal-02066103","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2018, 19 (1), pp.24. ⟨10.1186/s12859-018-2020-x⟩","raw_type":"Journal articles"},{"id":"pmh:oai:HAL:hal-02393094v1","is_oa":true,"landing_page_url":"https://hal-amu.archives-ouvertes.fr/hal-02393094","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1471-2105","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:a091302f2d184832bd4e3b4704f4b67e","is_oa":true,"landing_page_url":"https://doaj.org/article/a091302f2d184832bd4e3b4704f4b67e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 19, Iss 1, Pp 1-19 (2018)","raw_type":"article"},{"id":"pmh:oai:escidoc.org:escidoc:2552874","is_oa":true,"landing_page_url":"http://hdl.handle.net/21.11116/0000-0000-B124-F","pdf_url":null,"source":{"id":"https://openalex.org/S7407052962","display_name":"Max Planck Digital Library","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5787307","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5787307","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-018-2020-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-018-2020-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-018-2020-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1512583955","display_name":"INITIATIVE D'EXCELLENCE AIX MARSEILLE UNIVERSITE","funder_award_id":"ANR-11-IDEX-0001","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320322434","display_name":"Max-Planck-Gesellschaft","ror":"https://ror.org/01hhn8329"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2784948696.pdf","grobid_xml":"https://content.openalex.org/works/W2784948696.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1487794385","https://openalex.org/W1760213857","https://openalex.org/W1937590909","https://openalex.org/W1995567962","https://openalex.org/W2010830967","https://openalex.org/W2015794762","https://openalex.org/W2036826728","https://openalex.org/W2050945397","https://openalex.org/W2061142076","https://openalex.org/W2085184586","https://openalex.org/W2096525273","https://openalex.org/W2102225814","https://openalex.org/W2110371871","https://openalex.org/W2130290331","https://openalex.org/W2131478115","https://openalex.org/W2136430672","https://openalex.org/W2142553004","https://openalex.org/W2145091349","https://openalex.org/W2154139219","https://openalex.org/W2154969851","https://openalex.org/W2157437977","https://openalex.org/W2162028987","https://openalex.org/W2173732482","https://openalex.org/W2206815873","https://openalex.org/W2327335130","https://openalex.org/W2582811744","https://openalex.org/W2584292253","https://openalex.org/W2607931183","https://openalex.org/W4210702584","https://openalex.org/W4231297290","https://openalex.org/W4238718120","https://openalex.org/W4255659575"],"related_works":["https://openalex.org/W1919101720","https://openalex.org/W4390822878","https://openalex.org/W96888382","https://openalex.org/W2041308758","https://openalex.org/W4386126592","https://openalex.org/W2951907088","https://openalex.org/W4237434372","https://openalex.org/W2622688551","https://openalex.org/W1550175370","https://openalex.org/W1990205660"],"abstract_inverted_index":{"BACKGROUND:":[0],"Protein":[1],"or":[2,29],"nucleic":[3],"acid":[4],"sequences":[5],"contain":[6],"a":[7,72,90,101,109,115,121,165,175,180],"multitude":[8],"of":[9,49,64,78,86,103,111,117,120,129,151,177,188,205],"associated":[10],"annotations":[11,28,48,88,119,173],"representing":[12],"continuous":[13],"sequence":[14,87,123,196],"elements":[15],"(CSEs).":[16],"Comparing":[17],"these":[18],"CSEs":[19],"is":[20,35,164],"needed,":[21],"whenever":[22],"we":[23],"want":[24],"to":[25,60,82,143,157,201],"match":[26],"identical":[27],"integrate":[30],"distinctive":[31],"ones.":[32],"Currently,":[33],"there":[34],"no":[36],"ready-to-use":[37],"software":[38],"available":[39],"that":[40,106],"provides":[41],"comprehensive":[42],"statistical":[43,112,181],"readout":[44],"for":[45,171,183,209],"comparing":[46,172],"two":[47],"the":[50,61,65,127,149,154],"same":[51],"type":[52],"with":[53,179],"each":[54],"other,":[55],"which":[56],"can":[57,107],"be":[58],"adapted":[59],"application":[62,155],"logic":[63,156],"scientific":[66,160],"question.":[67],"RESULTS:":[68],"We":[69,125,147],"have":[70],"developed":[71],"method,":[73],"SLALOM":[74,94,130,163,200],"(for":[75],"StatisticaL":[76],"Analysis":[77],"Locus":[79],"Overlap":[80],"Method),":[81],"perform":[83],"comparative":[84],"analysis":[85],"in":[89,174],"highly":[91,166],"flexible":[92],"way.":[93],"implements":[95],"six":[96],"major":[97],"operation":[98],"modes":[99],"and":[100,137,139,186,190],"number":[102],"additional":[104],"options":[105],"answer":[108],"variety":[110],"questions":[113],"about":[114],"pair":[116],"input":[118],"given":[122],"collection.":[124],"demonstrate":[126],"results":[128],"on":[131],"three":[132],"different":[133],"examples":[134],"from":[135,195,213],"biology":[136],"economics":[138],"compare":[140,202],"our":[141],"method":[142,170],"already":[144],"existing":[145],"software.":[146],"discuss":[148],"importance":[150],"carefully":[152],"choosing":[153],"address":[158],"specific":[159],"questions.":[161],"CONCLUSION:":[162],"versatile,":[167],"command-line":[168],"based":[169],"collection":[176],"sequences,":[178],"read-out":[182],"performance":[184],"evaluation":[185],"benchmarking":[187],"predictors":[189],"gene":[191],"annotation":[192],"pipelines.":[193],"Abstraction":[194],"content":[197],"even":[198],"allows":[199],"other":[203],"kinds":[204],"positional":[206],"data":[207,211],"including,":[208],"example,":[210],"coming":[212],"time":[214],"series.":[215]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-06-22T08:00:12.763002","created_date":"2025-10-10T00:00:00"}