{"id":"https://openalex.org/W2781268828","doi":"https://doi.org/10.1186/s12859-017-1973-5","title":"GTZ: a fast compression and cloud transmission tool optimized for FASTQ files","display_name":"GTZ: a fast compression and cloud transmission tool optimized for FASTQ files","publication_year":2017,"publication_date":"2017-12-01","ids":{"openalex":"https://openalex.org/W2781268828","doi":"https://doi.org/10.1186/s12859-017-1973-5","mag":"2781268828","pmid":"https://pubmed.ncbi.nlm.nih.gov/29297296"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1973-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1973-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-017-1973-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-017-1973-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102933945","display_name":"Yuting Xing","orcid":"https://orcid.org/0000-0003-2307-0194"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuting Xing","raw_affiliation_strings":["School of Computer Science, National University of Defense Technology, Changsha, 410000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, National University of Defense Technology, Changsha, 410000, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100357037","display_name":"Gen Li","orcid":"https://orcid.org/0000-0002-6883-2407"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gen Li","raw_affiliation_strings":["Genetalks Biotech. Co.,Ltd., Beijing, 100000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genetalks Biotech. Co.,Ltd., Beijing, 100000, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102742558","display_name":"Zhenguo Wang","orcid":"https://orcid.org/0000-0001-7105-4071"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhenguo Wang","raw_affiliation_strings":["Genetalks Biotech. Co.,Ltd., Beijing, 100000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genetalks Biotech. Co.,Ltd., Beijing, 100000, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015523793","display_name":"Bolun Feng","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bolun Feng","raw_affiliation_strings":["Genetalks Biotech. Co.,Ltd., Beijing, 100000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genetalks Biotech. Co.,Ltd., Beijing, 100000, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101530041","display_name":"Zhuo Song","orcid":"https://orcid.org/0009-0000-5445-3302"},"institutions":[{"id":"https://openalex.org/I2802239252","display_name":"Sinovac Biotech","ror":"https://ror.org/057f25d66","country_code":"CN","type":"company","lineage":["https://openalex.org/I2802239252"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhuo Song","raw_affiliation_strings":["Genetalks Biotech. Co.,Ltd., Beijing, 100000, China. zhuosong@gmail.com","Genetalks Biotech. Co.,Ltd., Beijing, 100000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genetalks Biotech. Co.,Ltd., Beijing, 100000, China. zhuosong@gmail.com","institution_ids":["https://openalex.org/I2802239252"]},{"raw_affiliation_string":"Genetalks Biotech. Co.,Ltd., Beijing, 100000, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054335730","display_name":"Chengkun Wu","orcid":"https://orcid.org/0000-0002-9688-5311"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chengkun Wu","raw_affiliation_strings":["School of Computer Science, National University of Defense Technology, Changsha, 410000, China. Chengkun_wu@nudt.edu.cn","School of Computer Science, National University of Defense Technology, Changsha, 410000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, National University of Defense Technology, Changsha, 410000, China. Chengkun_wu@nudt.edu.cn","institution_ids":["https://openalex.org/I170215575"]},{"raw_affiliation_string":"School of Computer Science, National University of Defense Technology, Changsha, 410000, China","institution_ids":["https://openalex.org/I170215575"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5054335730","https://openalex.org/A5101530041"],"corresponding_institution_ids":["https://openalex.org/I170215575","https://openalex.org/I2802239252"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.8107,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.89246186,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"18","issue":"S16","first_page":"549","last_page":"549"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.6618000268936157,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.6618000268936157,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.14000000059604645,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10317","display_name":"Advanced Database Systems and Queries","score":0.03590000048279762,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8370425701141357},{"id":"https://openalex.org/keywords/lossless-compression","display_name":"Lossless compression","score":0.7982913255691528},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.6199926733970642},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.5855027437210083},{"id":"https://openalex.org/keywords/lossy-compression","display_name":"Lossy compression","score":0.5632895231246948},{"id":"https://openalex.org/keywords/data-transmission","display_name":"Data transmission","score":0.44549819827079773},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3220366835594177},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.2552143931388855},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.18221282958984375},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1774706244468689}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8370425701141357},{"id":"https://openalex.org/C81081738","wikidata":"https://www.wikidata.org/wiki/Q55542","display_name":"Lossless compression","level":3,"score":0.7982913255691528},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.6199926733970642},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.5855027437210083},{"id":"https://openalex.org/C165021410","wikidata":"https://www.wikidata.org/wiki/Q55564","display_name":"Lossy compression","level":2,"score":0.5632895231246948},{"id":"https://openalex.org/C557945733","wikidata":"https://www.wikidata.org/wiki/Q389772","display_name":"Data transmission","level":2,"score":0.44549819827079773},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3220366835594177},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.2552143931388855},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.18221282958984375},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1774706244468689}],"mesh":[{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-017-1973-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1973-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-017-1973-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29297296","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29297296","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:2835d3e059f94f9088aea5ab53cbac1c","is_oa":true,"landing_page_url":"https://doaj.org/article/2835d3e059f94f9088aea5ab53cbac1c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 18, Iss S16, Pp 233-242 (2017)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4668057","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5751770","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1973-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1973-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-017-1973-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1019986382","display_name":null,"funder_award_id":"No. 2016YFC0905000","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G152605406","display_name":null,"funder_award_id":"81573511","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1905207532","display_name":null,"funder_award_id":"2016YFC0905000","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3283331719","display_name":null,"funder_award_id":"No.81522048","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3814913375","display_name":null,"funder_award_id":"No. 31501073","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4618252195","display_name":null,"funder_award_id":"31501073","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G507491768","display_name":null,"funder_award_id":"No.81573511","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8074706896","display_name":null,"funder_award_id":"2016YFC0905000","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8511225699","display_name":null,"funder_award_id":"81522048","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2781268828.pdf","grobid_xml":"https://content.openalex.org/works/W2781268828.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1548134937","https://openalex.org/W1970231722","https://openalex.org/W1982703709","https://openalex.org/W2000466469","https://openalex.org/W2051929999","https://openalex.org/W2060108852","https://openalex.org/W2092880969","https://openalex.org/W2105583187","https://openalex.org/W2107745473","https://openalex.org/W2111044311","https://openalex.org/W2114792961","https://openalex.org/W2138196010","https://openalex.org/W2146028503","https://openalex.org/W2166588423","https://openalex.org/W2169084173","https://openalex.org/W4233095313"],"related_works":["https://openalex.org/W2385628723","https://openalex.org/W2547124190","https://openalex.org/W3180760233","https://openalex.org/W1970394887","https://openalex.org/W3035703949","https://openalex.org/W4247601675","https://openalex.org/W2118338613","https://openalex.org/W755971114","https://openalex.org/W1982468865","https://openalex.org/W4210455546"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1],"dramatic":[2],"development":[3],"of":[4,48,79,126,143,163],"DNA":[5],"sequencing":[6,49],"technology":[7],"is":[8,34,124,172,206],"generating":[9],"real":[10],"big":[11],"data,":[12],"craving":[13],"for":[14,66,195],"more":[15],"storage":[16,198],"and":[17,24,31,46,62,91,168,182,199],"bandwidth.":[18],"To":[19],"speed":[20,167],"up":[21],"data":[22,26,50,93,129,133,180,184,197],"sharing":[23],"bring":[25],"to":[27,36,86,103,115,187],"computing":[28,121],"resource":[29],"faster":[30],"cheaper,":[32],"it":[33,123,156],"necessary":[35],"develop":[37],"a":[38,60,70,113,173,192],"compression":[39,45,61,165,181],"tool":[40,114,174,194],"than":[41],"can":[42,99],"support":[43],"efficient":[44,177],"transmission":[47,63,185,200],"onto":[51,186],"the":[52,119,141,164,202],"cloud":[53,120,136,203],"storage.":[54],"RESULTS:":[55],"This":[56],"paper":[57],"presents":[58],"GTZ,":[59],"tool,":[64],"optimized":[65],"FASTQ":[67,73,80,148,179],"files.":[68],"As":[69],"reference-free":[71],"lossless":[72,178],"compressor,":[74],"GTZ":[75,98,144,171,205],"treats":[76],"different":[77],"lines":[78],"separately,":[81],"utilizes":[82],"adaptive":[83],"context":[84],"modelling":[85],"estimate":[87],"their":[88],"characteristic":[89],"probabilities,":[90],"compresses":[92],"blocks":[94],"with":[95],"arithmetic":[96],"coding.":[97],"also":[100],"be":[101,116],"used":[102,117],"compress":[104],"multiple":[105],"files":[106],"or":[107,131],"directories":[108],"at":[109],"once.":[110],"Furthermore,":[111],"as":[112,191],"in":[118,153,161,201],"era,":[122],"capable":[125],"saving":[127],"compressed":[128],"locally":[130],"transmitting":[132],"directly":[134],"into":[135],"by":[137],"choice.":[138],"We":[139],"evaluated":[140],"performance":[142],"on":[145],"some":[146],"diverse":[147],"benchmarks.":[149],"Results":[150],"show":[151],"that":[152,175],"most":[154],"cases,":[155],"outperforms":[157],"many":[158],"other":[159],"tools":[160],"terms":[162],"ratio,":[166],"stability.":[169],"CONCLUSIONS:":[170],"enables":[176],"simultaneous":[183],"cloud.":[188],"It":[189],"emerges":[190],"useful":[193],"NGS":[196],"environment.":[204],"freely":[207],"available":[208],"online":[209],"at:":[210],"https://github.com/Genetalks/gtz":[211],".":[212]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
