{"id":"https://openalex.org/W2775759996","doi":"https://doi.org/10.1186/s12859-017-1945-9","title":"Explorative visual analytics on interval-based genomic data and their metadata","display_name":"Explorative visual analytics on interval-based genomic data and their metadata","publication_year":2017,"publication_date":"2017-12-01","ids":{"openalex":"https://openalex.org/W2775759996","doi":"https://doi.org/10.1186/s12859-017-1945-9","mag":"2775759996","pmid":"https://pubmed.ncbi.nlm.nih.gov/29202689"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1945-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1945-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1945-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1945-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087600054","display_name":"Vahid Jalili","orcid":"https://orcid.org/0000-0003-4986-2157"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Vahid Jalili","raw_affiliation_strings":["Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, 20133, Italy. vahid.jalili@polimi.it","Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, 20133, Italy"],"raw_orcid":"https://orcid.org/0000-0003-4986-2157","affiliations":[{"raw_affiliation_string":"Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, 20133, Italy. vahid.jalili@polimi.it","institution_ids":["https://openalex.org/I93860229"]},{"raw_affiliation_string":"Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, 20133, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003932703","display_name":"Matteo Matteucci","orcid":"https://orcid.org/0000-0002-8306-6739"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Matteo Matteucci","raw_affiliation_strings":["Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, 20133, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, 20133, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085346183","display_name":"Marco Masseroli","orcid":"https://orcid.org/0000-0003-2574-1174"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Masseroli","raw_affiliation_strings":["Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, 20133, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, 20133, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048332811","display_name":"Stefano Ceri","orcid":"https://orcid.org/0000-0003-0671-2415"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Stefano Ceri","raw_affiliation_strings":["Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, 20133, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, 20133, Italy","institution_ids":["https://openalex.org/I93860229"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5087600054"],"corresponding_institution_ids":["https://openalex.org/I93860229"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.4486,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.64772052,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"18","issue":"1","first_page":"536","last_page":"536"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.15880000591278076,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.15880000591278076,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.14790000021457672,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14427","display_name":"Environmental Monitoring and Data Management","score":0.12030000239610672,"subfield":{"id":"https://openalex.org/subfields/1907","display_name":"Geology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8174378871917725},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7249965667724609},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7082476615905762},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.5946158766746521},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5164080262184143},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5085192918777466},{"id":"https://openalex.org/keywords/visual-analytics","display_name":"Visual analytics","score":0.5061203837394714},{"id":"https://openalex.org/keywords/interactive-visual-analysis","display_name":"Interactive visual analysis","score":0.4825698435306549},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.43259936571121216},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4017334282398224},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3817110061645508},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33897215127944946}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8174378871917725},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7249965667724609},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7082476615905762},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.5946158766746521},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5164080262184143},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5085192918777466},{"id":"https://openalex.org/C59732488","wikidata":"https://www.wikidata.org/wiki/Q2528440","display_name":"Visual analytics","level":3,"score":0.5061203837394714},{"id":"https://openalex.org/C99740376","wikidata":"https://www.wikidata.org/wiki/Q17092520","display_name":"Interactive visual analysis","level":4,"score":0.4825698435306549},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.43259936571121216},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4017334282398224},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3817110061645508},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33897215127944946},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072283","descriptor_name":"A549 Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072283","descriptor_name":"A549 Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072283","descriptor_name":"A549 Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000431","descriptor_name":"Ethanol","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000431","descriptor_name":"Ethanol","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000431","descriptor_name":"Ethanol","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D003907","descriptor_name":"Dexamethasone","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D003907","descriptor_name":"Dexamethasone","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D003907","descriptor_name":"Dexamethasone","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-017-1945-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1945-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1945-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29202689","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29202689","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:66d884fb4a56410db47ac4dba842fe0b","is_oa":true,"landing_page_url":"https://doaj.org/article/66d884fb4a56410db47ac4dba842fe0b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 18, Iss 1, Pp 1-15 (2017)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4635363","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5715631","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:re.public.polimi.it:11311/1039996","is_oa":true,"landing_page_url":"http://hdl.handle.net/11311/1039996","pdf_url":null,"source":{"id":"https://openalex.org/S4306400312","display_name":"Virtual Community of Pathological Anatomy (University of Castilla La Mancha)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79189158","host_organization_name":"University of Castilla-La Mancha","host_organization_lineage":["https://openalex.org/I79189158"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:zenodo.org:1098624","is_oa":true,"landing_page_url":"https://zenodo.org/record/1098624","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics 18(1) 536","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1945-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1945-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1945-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320338352","display_name":"FP7 Ideas: European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2775759996.pdf","grobid_xml":"https://content.openalex.org/works/W2775759996.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W1597656413","https://openalex.org/W1975152892","https://openalex.org/W1979521131","https://openalex.org/W1996881001","https://openalex.org/W2001175271","https://openalex.org/W2013216643","https://openalex.org/W2025559450","https://openalex.org/W2040547831","https://openalex.org/W2052908684","https://openalex.org/W2054308357","https://openalex.org/W2057167586","https://openalex.org/W2058815839","https://openalex.org/W2059944938","https://openalex.org/W2071949631","https://openalex.org/W2078526277","https://openalex.org/W2086376086","https://openalex.org/W2096173332","https://openalex.org/W2104811781","https://openalex.org/W2104836314","https://openalex.org/W2106370522","https://openalex.org/W2113039372","https://openalex.org/W2115648461","https://openalex.org/W2119707965","https://openalex.org/W2128016314","https://openalex.org/W2128098926","https://openalex.org/W2136101247","https://openalex.org/W2136482257","https://openalex.org/W2140771931","https://openalex.org/W2141585940","https://openalex.org/W2142680014","https://openalex.org/W2145163296","https://openalex.org/W2150926065","https://openalex.org/W2153277134","https://openalex.org/W2158485828","https://openalex.org/W2160623613","https://openalex.org/W2160697532","https://openalex.org/W2165741325","https://openalex.org/W2168175751","https://openalex.org/W2170488656","https://openalex.org/W2171777347","https://openalex.org/W2183306400","https://openalex.org/W2228647225","https://openalex.org/W2259938310","https://openalex.org/W2310768041","https://openalex.org/W2415647287","https://openalex.org/W2417240337","https://openalex.org/W2464717012","https://openalex.org/W2464824038","https://openalex.org/W2529555647","https://openalex.org/W2885727518","https://openalex.org/W2913941020","https://openalex.org/W2951926962","https://openalex.org/W4241687679","https://openalex.org/W4298033698","https://openalex.org/W4298096392","https://openalex.org/W6719662666","https://openalex.org/W7062094351"],"related_works":["https://openalex.org/W2148525144","https://openalex.org/W2053900997","https://openalex.org/W2018276586","https://openalex.org/W2134678736","https://openalex.org/W2779621916","https://openalex.org/W2112083262","https://openalex.org/W2400976661","https://openalex.org/W2005527191","https://openalex.org/W2013467770","https://openalex.org/W3012440071"],"abstract_inverted_index":{"BACKGROUND:":[0],"With":[1],"the":[2,11,37,74,96,99,203],"wide-spreading":[3],"of":[4,7,13,40,45,77,98,138,157,162,176,182,209,224],"public":[5],"repositories":[6],"NGS":[8,63,78],"processed":[9,79,113],"data,":[10],"availability":[12],"user-friendly":[14],"and":[15,22,47,61,81,166,171,192,200,206,215,233],"effective":[16,213],"tools":[17,29],"for":[18,36,53,59,72,107],"data":[19,41,64,80,163],"exploration,":[20,164],"analysis":[21,46,65,76,165,204],"visualization":[23,48,167],"is":[24,218,228,237],"becoming":[25],"very":[26],"relevant.":[27],"These":[28],"enable":[30],"interactive":[31,154],"analytics,":[32,155],"an":[33,85,103,183],"exploratory":[34],"approach":[35],"seamless":[38],"\"sense-making\"":[39],"through":[42,220],"on-the-fly":[43,158],"integration":[44],"phases,":[49],"suggested":[50],"not":[51],"only":[52],"evaluating":[54],"processing":[55],"results,":[56,196],"but":[57],"also":[58,117],"designing":[60],"adapting":[62],"pipelines.":[66],"RESULTS:":[67],"This":[68,93],"paper":[69],"presents":[70],"abstractions":[71],"supporting":[73],"early":[75],"their":[82,195],"implementation":[83],"in":[84,125,148,173,202],"associated":[86],"tool,":[87],"named":[88],"GenoMetric":[89,100],"Space":[90],"Explorer":[91],"(GeMSE).":[92],"tool":[94],"serves":[95],"needs":[97],"Query":[101],"Language,":[102],"innovative":[104],"cloud-based":[105],"system":[106],"computing":[108],"complex":[109],"queries":[110],"over":[111],"heterogeneous":[112,177],"data.":[114],"It":[115],"can":[116,142,188],"be":[118,143],"used":[119],"starting":[120],"from":[121],"any":[122],"text":[123,146],"files":[124,147],"standard":[126],"BED,":[127],"BroadPeak,":[128],"NarrowPeak,":[129],"GTF,":[130],"or":[131],"general":[132],"tab-delimited":[133,149],"format,":[134],"containing":[135],"numerical":[136],"features":[137],"genomic":[139,178],"regions;":[140],"metadata":[141],"provided":[144],"as":[145],"attribute-value":[150],"format.":[151],"GeMSE":[152,212,227],"allows":[153],"consisting":[156],"cycling":[159],"among":[160],"steps":[161,205],"that":[168],"help":[169],"biologists":[170],"bioinformaticians":[172],"making":[174],"sense":[175],"datasets.":[179],"By":[180],"means":[181],"explorative":[184],"interaction":[185],"support,":[186],"users":[187],"trace":[189],"past":[190],"activities":[191],"quickly":[193],"recover":[194],"seamlessly":[197],"going":[198],"backward":[199],"forward":[201],"comparative":[207],"visualizations":[208],"heatmaps.":[210],"CONCLUSIONS:":[211],"application":[214],"practical":[216],"usefulness":[217],"demonstrated":[219],"significant":[221],"use":[222],"cases":[223],"biological":[225],"interest.":[226],"available":[229,238],"at":[230,239],"http://www.bioinformatics.deib.polimi.it/GeMSE/":[231],",":[232],"its":[234],"source":[235],"code":[236],"https://github.com/Genometric/GeMSE":[240],"under":[241],"GPLv3":[242],"open-source":[243],"license.":[244]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}