{"id":"https://openalex.org/W2580035316","doi":"https://doi.org/10.1186/s12859-017-1934-z","title":"ImageJ2: ImageJ for the next generation of scientific image data","display_name":"ImageJ2: ImageJ for the next generation of scientific image data","publication_year":2017,"publication_date":"2017-11-29","ids":{"openalex":"https://openalex.org/W2580035316","doi":"https://doi.org/10.1186/s12859-017-1934-z","mag":"2580035316","pmid":"https://pubmed.ncbi.nlm.nih.gov/29187165"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1934-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1934-z","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-017-1934-z.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-017-1934-z.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078540488","display_name":"Curtis Rueden","orcid":"https://orcid.org/0000-0001-7055-6707"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Curtis T. Rueden","raw_affiliation_strings":["Laboratory for Optical and Computational Instrumentation, University of Wisconsin at Madison, Madison, Wisconsin, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Optical and Computational Instrumentation, University of Wisconsin at Madison, Madison, Wisconsin, USA","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050085853","display_name":"Johannes Schindelin","orcid":null},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]},{"id":"https://openalex.org/I29680605","display_name":"Morgridge Institute for Research","ror":"https://ror.org/05cb4rb43","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I135310074","https://openalex.org/I29680605"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Johannes Schindelin","raw_affiliation_strings":["Laboratory for Optical and Computational Instrumentation, University of Wisconsin at Madison, Madison, Wisconsin, USA","Morgridge Institute for Research, Madison, Wisconsin, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Optical and Computational Instrumentation, University of Wisconsin at Madison, Madison, Wisconsin, USA","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Morgridge Institute for Research, Madison, Wisconsin, USA","institution_ids":["https://openalex.org/I29680605"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032461862","display_name":"Mark Hiner","orcid":"https://orcid.org/0000-0001-9404-7579"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark C. Hiner","raw_affiliation_strings":["Laboratory for Optical and Computational Instrumentation, University of Wisconsin at Madison, Madison, Wisconsin, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Optical and Computational Instrumentation, University of Wisconsin at Madison, Madison, Wisconsin, USA","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026850497","display_name":"Barry E. DeZonia","orcid":"https://orcid.org/0000-0002-7151-8670"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Barry E. DeZonia","raw_affiliation_strings":["Laboratory for Optical and Computational Instrumentation, University of Wisconsin at Madison, Madison, Wisconsin, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Optical and Computational Instrumentation, University of Wisconsin at Madison, Madison, Wisconsin, USA","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086682236","display_name":"Alison E. Walter","orcid":null},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]},{"id":"https://openalex.org/I29680605","display_name":"Morgridge Institute for Research","ror":"https://ror.org/05cb4rb43","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I135310074","https://openalex.org/I29680605"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alison E. Walter","raw_affiliation_strings":["Laboratory for Optical and Computational Instrumentation, University of Wisconsin at Madison, Madison, Wisconsin, USA","Morgridge Institute for Research, Madison, Wisconsin, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Optical and Computational Instrumentation, University of Wisconsin at Madison, Madison, Wisconsin, USA","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Morgridge Institute for Research, Madison, Wisconsin, USA","institution_ids":["https://openalex.org/I29680605"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072445273","display_name":"Ellen T. Arena","orcid":"https://orcid.org/0000-0002-1049-9971"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]},{"id":"https://openalex.org/I29680605","display_name":"Morgridge Institute for Research","ror":"https://ror.org/05cb4rb43","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I135310074","https://openalex.org/I29680605"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ellen T. Arena","raw_affiliation_strings":["Laboratory for Optical and Computational Instrumentation, University of Wisconsin at Madison, Madison, Wisconsin, USA","Morgridge Institute for Research, Madison, Wisconsin, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Optical and Computational Instrumentation, University of Wisconsin at Madison, Madison, Wisconsin, USA","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Morgridge Institute for Research, Madison, Wisconsin, USA","institution_ids":["https://openalex.org/I29680605"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010413374","display_name":"Kevin W. Eliceiri","orcid":"https://orcid.org/0000-0001-8678-670X"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]},{"id":"https://openalex.org/I29680605","display_name":"Morgridge Institute for Research","ror":"https://ror.org/05cb4rb43","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I135310074","https://openalex.org/I29680605"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kevin W. Eliceiri","raw_affiliation_strings":["Laboratory for Optical and Computational Instrumentation, University of Wisconsin at Madison, Madison, Wisconsin, USA. eliceiri@wisc.edu","Morgridge Institute for Research, Madison, Wisconsin, USA. eliceiri@wisc.edu","Laboratory for Optical and Computational Instrumentation, University of Wisconsin at Madison, Madison, Wisconsin, USA"],"raw_orcid":"https://orcid.org/0000-0001-8678-670X","affiliations":[{"raw_affiliation_string":"Laboratory for Optical and Computational Instrumentation, University of Wisconsin at Madison, Madison, Wisconsin, USA. eliceiri@wisc.edu","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Morgridge Institute for Research, Madison, Wisconsin, USA. eliceiri@wisc.edu","institution_ids":["https://openalex.org/I29680605"]},{"raw_affiliation_string":"Laboratory for Optical and Computational Instrumentation, University of Wisconsin at Madison, Madison, Wisconsin, USA","institution_ids":["https://openalex.org/I135310074"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5010413374"],"corresponding_institution_ids":["https://openalex.org/I135310074","https://openalex.org/I29680605"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":580.5601,"has_fulltext":true,"cited_by_count":6273,"citation_normalized_percentile":{"value":1.0,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"18","issue":"1","first_page":"529","last_page":"529"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9541000127792358,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9541000127792358,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.014499999582767487,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.002199999988079071,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5523760318756104},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.49190258979797363},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.44938012957572937},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.4316132068634033},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3675444722175598},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3523356318473816},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3388262093067169}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5523760318756104},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.49190258979797363},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.44938012957572937},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.4316132068634033},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3675444722175598},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3523356318473816},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3388262093067169}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-017-1934-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1934-z","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-017-1934-z.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29187165","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29187165","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:c0911587739a48c6b8ae3cb36bc6ff15","is_oa":false,"landing_page_url":"https://doaj.org/article/c0911587739a48c6b8ae3cb36bc6ff15","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 18, Iss 1, Pp 1-26 (2017)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4631095","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5708080","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1934-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1934-z","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-017-1934-z.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4300000071525574,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2855684042","display_name":null,"funder_award_id":"095931","funder_id":"https://openalex.org/F4320307874","funder_display_name":"Wellcome"},{"id":"https://openalex.org/G6715017824","display_name":"SI2-SSE: SCIFIO: An Extensible Framework for Scientific Image Interoperability","funder_award_id":"1148362","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7349313740","display_name":"The Open Microscopy Environment: Image Informatics for Biological Sciences","funder_award_id":"095931","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G8208903855","display_name":null,"funder_award_id":"RC2 GM092519","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G911675319","display_name":null,"funder_award_id":"RC2 GM092519-01","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320307874","display_name":"Wellcome","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2580035316.pdf","grobid_xml":"https://content.openalex.org/works/W2580035316.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W1506445320","https://openalex.org/W1510316655","https://openalex.org/W1524992328","https://openalex.org/W1540070193","https://openalex.org/W1558633536","https://openalex.org/W1569530544","https://openalex.org/W1580913419","https://openalex.org/W1588555795","https://openalex.org/W1796494484","https://openalex.org/W1835740130","https://openalex.org/W1853753143","https://openalex.org/W1969389753","https://openalex.org/W1970480709","https://openalex.org/W1971993655","https://openalex.org/W1974694769","https://openalex.org/W1989396876","https://openalex.org/W2000558985","https://openalex.org/W2006302594","https://openalex.org/W2016029650","https://openalex.org/W2020111712","https://openalex.org/W2031502025","https://openalex.org/W2037200077","https://openalex.org/W2037947871","https://openalex.org/W2090719869","https://openalex.org/W2099540110","https://openalex.org/W2104827963","https://openalex.org/W2107554012","https://openalex.org/W2121469024","https://openalex.org/W2129289695","https://openalex.org/W2131579659","https://openalex.org/W2136773811","https://openalex.org/W2137753785","https://openalex.org/W2154917588","https://openalex.org/W2166572577","https://openalex.org/W2167279371","https://openalex.org/W2168166653","https://openalex.org/W2170358380","https://openalex.org/W2229412420","https://openalex.org/W2268279227","https://openalex.org/W2331982492","https://openalex.org/W2344741602","https://openalex.org/W2410532393","https://openalex.org/W2419496464","https://openalex.org/W2467628122","https://openalex.org/W2468870810","https://openalex.org/W2474653353","https://openalex.org/W2483966273","https://openalex.org/W2501301823","https://openalex.org/W2529052661","https://openalex.org/W2541869304","https://openalex.org/W2560690681","https://openalex.org/W2560760128","https://openalex.org/W2589048514","https://openalex.org/W2592068467","https://openalex.org/W2601810315","https://openalex.org/W2603330924","https://openalex.org/W2885204140","https://openalex.org/W3103884078","https://openalex.org/W3207577578","https://openalex.org/W4210512919","https://openalex.org/W4248275435","https://openalex.org/W4391605072"],"related_works":["https://openalex.org/W2755342338","https://openalex.org/W2779427294","https://openalex.org/W2775347418","https://openalex.org/W2625805835","https://openalex.org/W2079911747","https://openalex.org/W3116076068","https://openalex.org/W3003936178","https://openalex.org/W2145652935","https://openalex.org/W2563206327","https://openalex.org/W2069885731"],"abstract_inverted_index":{"BACKGROUND:":[0],"ImageJ":[1,28,103,239,273],"is":[2,225],"an":[3],"image":[4,187,215],"analysis":[5],"program":[6],"extensively":[7],"used":[8],"in":[9,47,146,213,280,323],"the":[10,53,88,93,101,118,130,149,163,167,198,218,237],"biological":[11,54],"sciences":[12],"and":[13,24,35,55,67,243,267,284,326],"beyond.":[14],"Due":[15],"to":[16,81,86,91,111,128,176,189,192,194,245,247,269,305],"its":[17],"ease":[18],"of":[19,43,95,120,138,155,220],"use,":[20],"recordable":[21],"macro":[22],"language,":[23],"extensible":[25],"plug-in":[26],"architecture,":[27],"enjoys":[29],"contributions":[30],"from":[31,166,186,259],"non-programmers,":[32],"amateur":[33],"programmers,":[34],"professional":[36],"developers":[37,244],"alike.":[38],"Enabling":[39],"such":[40,227],"a":[41,48,59,72,76,106,122,135,153,270,299],"diversity":[42],"contributors":[44],"has":[45,274],"resulted":[46],"large":[49],"community":[50,132],"that":[51,126,228,262],"spans":[52],"physical":[56],"sciences.":[57],"However,":[58],"rapidly":[60],"growing":[61],"user":[62,168],"base,":[63],"diverging":[64],"plugin":[65,108,182],"suites,":[66],"technical":[68],"limitations":[69],"have":[70,288],"revealed":[71],"clear":[73],"need":[74],"for":[75,292,302],"concerted":[77],"software":[78,333],"engineering":[79,105],"effort":[80],"support":[82,306],"emerging":[83,285],"imaging":[84,257],"paradigms,":[85],"ensure":[87],"software's":[89],"ability":[90],"handle":[92],"requirements":[94,287,308],"modern":[96,214],"science.":[97],"RESULTS:":[98],"We":[99],"rewrote":[100],"entire":[102],"codebase,":[104],"redesigned":[107,201],"mechanism":[109],"intended":[110,304],"facilitate":[112],"extensibility":[113],"at":[114,251],"every":[115],"level,":[116],"with":[117,173,236,277,329],"goal":[119],"creating":[121],"more":[123],"powerful":[124],"tool":[125],"continues":[127],"serve":[129],"existing":[131],"while":[133],"addressing":[134],"wider":[136],"range":[137],"scientific":[139,286,332],"requirements.":[140],"This":[141],"next-generation":[142],"ImageJ,":[143],"called":[144],"\"ImageJ2\"":[145],"places":[147],"where":[148],"distinction":[150],"matters,":[151],"provides":[152],"host":[154],"new":[156,181,230,249,264,283,321],"functionality.":[157],"It":[158,170],"separates":[159],"concerns,":[160],"fully":[161],"decoupling":[162],"data":[164,202],"model":[165,203],"interface.":[169],"emphasizes":[171],"integration":[172],"external":[174],"applications":[175],"maximize":[177],"interoperability.":[178],"Its":[179],"robust":[180],"framework":[183,300,325],"allows":[184],"everything":[185],"formats,":[188],"scripting":[190],"languages,":[191],"visualization":[193],"be":[195,233],"extended":[196],"by":[197],"community.":[199],"The":[200,295],"supports":[204],"arbitrarily":[205],"large,":[206],"N-dimensional":[207],"datasets,":[208],"which":[209],"are":[210],"increasingly":[211],"common":[212],"acquisition.":[216],"Despite":[217],"scope":[219],"these":[221,248,307],"changes,":[222],"backwards":[223],"compatibility":[224],"maintained":[226],"this":[229,278,324],"functionality":[231],"can":[232],"seamlessly":[234],"integrated":[235],"classic":[238],"interface,":[240],"allowing":[241],"users":[242],"migrate":[246],"methods":[250],"their":[252],"own":[253],"pace.":[254],"CONCLUSIONS:":[255],"Scientific":[256],"benefits":[258],"open-source":[260],"programs":[261],"advance":[263],"method":[265],"development":[266],"deployment":[268],"diverse":[271],"audience.":[272],"continuously":[275],"evolved":[276],"idea":[279],"mind;":[281],"however,":[282],"posed":[289],"corresponding":[290],"challenges":[291],"ImageJ's":[293],"development.":[294],"described":[296],"improvements":[297],"provide":[298],"engineered":[301],"flexibility,":[303],"as":[309,311],"well":[310],"accommodate":[312],"future":[313],"needs.":[314],"Future":[315],"efforts":[316],"will":[317],"focus":[318],"on":[319],"implementing":[320],"algorithms":[322],"expanding":[327],"collaborations":[328],"other":[330],"popular":[331],"suites.":[334]},"counts_by_year":[{"year":2026,"cited_by_count":266},{"year":2025,"cited_by_count":586},{"year":2024,"cited_by_count":685},{"year":2023,"cited_by_count":661},{"year":2022,"cited_by_count":792},{"year":2021,"cited_by_count":1255},{"year":2020,"cited_by_count":1062},{"year":2019,"cited_by_count":667},{"year":2018,"cited_by_count":274},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-13T07:31:44.756512","created_date":"2025-10-10T00:00:00"}