{"id":"https://openalex.org/W2769794976","doi":"https://doi.org/10.1186/s12859-017-1930-3","title":"GFF3sort: a novel tool to sort GFF3 files for tabix indexing","display_name":"GFF3sort: a novel tool to sort GFF3 files for tabix indexing","publication_year":2017,"publication_date":"2017-11-14","ids":{"openalex":"https://openalex.org/W2769794976","doi":"https://doi.org/10.1186/s12859-017-1930-3","mag":"2769794976","pmid":"https://pubmed.ncbi.nlm.nih.gov/29137598"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1930-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1930-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1930-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1930-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047073235","display_name":"Tao Zhu","orcid":"https://orcid.org/0000-0002-2358-6871"},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210167153","display_name":"Biotechnology Research Institute","ror":"https://ror.org/05vm76w92","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210167153"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tao Zhu","raw_affiliation_strings":["Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China"],"raw_orcid":"https://orcid.org/0000-0002-2358-6871","affiliations":[{"raw_affiliation_string":"Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210167153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033542000","display_name":"Chengzhen Liang","orcid":"https://orcid.org/0000-0001-5385-2360"},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210167153","display_name":"Biotechnology Research Institute","ror":"https://ror.org/05vm76w92","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210167153"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengzhen Liang","raw_affiliation_strings":["Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210167153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100802190","display_name":"Zhigang Meng","orcid":null},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210167153","display_name":"Biotechnology Research Institute","ror":"https://ror.org/05vm76w92","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210167153"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhigang Meng","raw_affiliation_strings":["Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210167153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110272537","display_name":"Sandui Guo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210144193","display_name":"Biotechnology Research Institute","ror":"https://ror.org/04eba5983","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210144193","https://openalex.org/I4210159778"]},{"id":"https://openalex.org/I4210167153","display_name":"Biotechnology Research Institute","ror":"https://ror.org/05vm76w92","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210167153"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Sandui Guo","raw_affiliation_strings":["Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China. guosandui@caas.cn","Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China. guosandui@caas.cn","institution_ids":["https://openalex.org/I4210144193"]},{"raw_affiliation_string":"Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210167153"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088612057","display_name":"Ruisheng Zhang","orcid":"https://orcid.org/0000-0002-6585-2656"},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210144193","display_name":"Biotechnology Research Institute","ror":"https://ror.org/04eba5983","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210144193","https://openalex.org/I4210159778"]},{"id":"https://openalex.org/I4210167153","display_name":"Biotechnology Research Institute","ror":"https://ror.org/05vm76w92","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210167153"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Rui Zhang","raw_affiliation_strings":["Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China. zhangrui@caas.cn","Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China. zhangrui@caas.cn","institution_ids":["https://openalex.org/I4210144193"]},{"raw_affiliation_string":"Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210167153"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5047073235"],"corresponding_institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210167153"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.1340573,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"18","issue":"1","first_page":"482","last_page":"482"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.4009000062942505,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.4009000062942505,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.16220000386238098,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11928","display_name":"Genetic Syndromes and Imprinting","score":0.055799998342990875,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8091344833374023},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.7407375574111938},{"id":"https://openalex.org/keywords/sort","display_name":"sort","score":0.6907564997673035},{"id":"https://openalex.org/keywords/rendering","display_name":"Rendering (computer graphics)","score":0.5960802435874939},{"id":"https://openalex.org/keywords/sorting","display_name":"Sorting","score":0.5537758469581604},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5440002083778381},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5439302325248718},{"id":"https://openalex.org/keywords/json","display_name":"JSON","score":0.536548376083374},{"id":"https://openalex.org/keywords/sorting-algorithm","display_name":"Sorting algorithm","score":0.4953874349594116},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4871642291545868},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.48408806324005127},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4835033714771271},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.33904650807380676},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.2109113335609436},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20511826872825623},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1487296223640442}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8091344833374023},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.7407375574111938},{"id":"https://openalex.org/C88548561","wikidata":"https://www.wikidata.org/wiki/Q347599","display_name":"sort","level":2,"score":0.6907564997673035},{"id":"https://openalex.org/C205711294","wikidata":"https://www.wikidata.org/wiki/Q176953","display_name":"Rendering (computer graphics)","level":2,"score":0.5960802435874939},{"id":"https://openalex.org/C111696304","wikidata":"https://www.wikidata.org/wiki/Q2303697","display_name":"Sorting","level":2,"score":0.5537758469581604},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5440002083778381},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5439302325248718},{"id":"https://openalex.org/C2780416260","wikidata":"https://www.wikidata.org/wiki/Q2063","display_name":"JSON","level":2,"score":0.536548376083374},{"id":"https://openalex.org/C108094655","wikidata":"https://www.wikidata.org/wiki/Q181593","display_name":"Sorting algorithm","level":3,"score":0.4953874349594116},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4871642291545868},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.48408806324005127},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4835033714771271},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.33904650807380676},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.2109113335609436},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20511826872825623},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1487296223640442}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-017-1930-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1930-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1930-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29137598","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29137598","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:82e6738e64ad4ed5a28ef060cbe134f4","is_oa":true,"landing_page_url":"https://doaj.org/article/82e6738e64ad4ed5a28ef060cbe134f4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 18, Iss 1, Pp 1-4 (2017)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4608084","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5686826","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1930-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1930-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1930-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2384077806","display_name":null,"funder_award_id":"2016ZX08005004","funder_id":"https://openalex.org/F4320322736","funder_display_name":"Ministry of Agriculture of the People's Republic of China"},{"id":"https://openalex.org/G916762558","display_name":null,"funder_award_id":"31771850","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322736","display_name":"Ministry of Agriculture of the People's Republic of China","ror":"https://ror.org/05ckt8b96"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2769794976.pdf","grobid_xml":"https://content.openalex.org/works/W2769794976.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W2070342831","https://openalex.org/W2142386149","https://openalex.org/W2167155938","https://openalex.org/W2336957559","https://openalex.org/W4210659358"],"related_works":["https://openalex.org/W2908348257","https://openalex.org/W4392178020","https://openalex.org/W2994182992","https://openalex.org/W2350549588","https://openalex.org/W2085265870","https://openalex.org/W2362374543","https://openalex.org/W3206496585","https://openalex.org/W2187267622","https://openalex.org/W2351942115","https://openalex.org/W2922989628"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,21],"traditional":[2],"method":[3],"of":[4,24,93],"visualizing":[5],"gene":[6],"annotation":[7,160],"data":[8,161],"in":[9,66],"JBrowse":[10,25,84],"is":[11,19,38,138],"converting":[12],"GFF3":[13,29,51,76,144],"files":[14,30,77,145],"to":[15,63,74,142,156],"JSON":[16],"format,":[17],"which":[18],"time-consuming.":[20],"latest":[22],"version":[23],"supports":[26],"rendering":[27,65],"sorted":[28],"indexed":[31],"by":[32,104,110],"tabix,":[33],"a":[34,72,139],"novel":[35,140],"strategy":[36],"that":[37,95,151],"more":[39],"convenient":[40],"than":[41],"the":[42,91,97],"original":[43,107],"conversion":[44],"process.":[45],"However,":[46],"current":[47],"tools":[48],"available":[49,134],"for":[50,78,83,146],"file":[52],"sorting":[53,59,126],"have":[54,96],"some":[55],"limitations":[56],"and":[57,100,163],"their":[58,106],"results":[60,127],"would":[61],"lead":[62],"erroneous":[64],"JBrowse.":[67],"RESULTS:":[68],"We":[69,149],"developed":[70],"GFF3sort,":[71],"script":[73],"sort":[75,143],"tabix":[79,147],"indexing.":[80,148],"Specifically":[81],"designed":[82],"rendering,":[85],"GFF3sort":[86,123,137,152],"can":[87],"properly":[88],"deal":[89],"with":[90,128,132,158],"order":[92],"features":[94],"same":[98],"chromosome":[99],"start":[101],"position,":[102],"either":[103],"remembering":[105],"orders":[108],"or":[109],"conducting":[111],"parent-child":[112],"topology":[113],"sorting.":[114],"Based":[115],"on":[116],"our":[117],"test":[118],"datasets":[119],"from":[120],"seven":[121],"species,":[122],"produced":[124],"accurate":[125],"acceptable":[129],"efficiency":[130],"compared":[131],"currently":[133],"tools.":[135],"CONCLUSIONS:":[136],"tool":[141],"anticipate":[150],"will":[153],"be":[154],"useful":[155],"help":[157],"genome":[159],"processing":[162],"visualization.":[164]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2021,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
