{"id":"https://openalex.org/W2767592750","doi":"https://doi.org/10.1186/s12859-017-1883-6","title":"JS-MS: a cross-platform, modular javascript viewer for mass spectrometry signals","display_name":"JS-MS: a cross-platform, modular javascript viewer for mass spectrometry signals","publication_year":2017,"publication_date":"2017-11-06","ids":{"openalex":"https://openalex.org/W2767592750","doi":"https://doi.org/10.1186/s12859-017-1883-6","mag":"2767592750","pmid":"https://pubmed.ncbi.nlm.nih.gov/29110634"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1883-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1883-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1883-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1883-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060785957","display_name":"Jeb Rosen","orcid":"https://orcid.org/0000-0002-8832-1276"},"institutions":[{"id":"https://openalex.org/I6750721","display_name":"University of Montana","ror":"https://ror.org/0078xmk34","country_code":"US","type":"education","lineage":["https://openalex.org/I6750721"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jebediah Rosen","raw_affiliation_strings":["Department of Computer Science, University of Montana, 32 Campus Drive, Missoula, 59812, MT, USA","Department of Computer Science, University of Montana, Missoula, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Montana, 32 Campus Drive, Missoula, 59812, MT, USA","institution_ids":["https://openalex.org/I6750721"]},{"raw_affiliation_string":"Department of Computer Science, University of Montana, Missoula, USA","institution_ids":["https://openalex.org/I6750721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025860029","display_name":"Kyle Handy","orcid":null},"institutions":[{"id":"https://openalex.org/I6750721","display_name":"University of Montana","ror":"https://ror.org/0078xmk34","country_code":"US","type":"education","lineage":["https://openalex.org/I6750721"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kyle Handy","raw_affiliation_strings":["Department of Computer Science, University of Montana, 32 Campus Drive, Missoula, 59812, MT, USA","Department of Computer Science, University of Montana, Missoula, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Montana, 32 Campus Drive, Missoula, 59812, MT, USA","institution_ids":["https://openalex.org/I6750721"]},{"raw_affiliation_string":"Department of Computer Science, University of Montana, Missoula, USA","institution_ids":["https://openalex.org/I6750721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075128730","display_name":"Andr\u00e9 Gillan","orcid":null},"institutions":[{"id":"https://openalex.org/I6750721","display_name":"University of Montana","ror":"https://ror.org/0078xmk34","country_code":"US","type":"education","lineage":["https://openalex.org/I6750721"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andr\u00e9 Gillan","raw_affiliation_strings":["Department of Computer Science, University of Montana, 32 Campus Drive, Missoula, 59812, MT, USA","Department of Computer Science, University of Montana, Missoula, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Montana, 32 Campus Drive, Missoula, 59812, MT, USA","institution_ids":["https://openalex.org/I6750721"]},{"raw_affiliation_string":"Department of Computer Science, University of Montana, Missoula, USA","institution_ids":["https://openalex.org/I6750721"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046228650","display_name":"Rob Smith","orcid":null},"institutions":[{"id":"https://openalex.org/I6750721","display_name":"University of Montana","ror":"https://ror.org/0078xmk34","country_code":"US","type":"education","lineage":["https://openalex.org/I6750721"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rob Smith","raw_affiliation_strings":["Department of Computer Science, University of Montana, 32 Campus Drive, Missoula, 59812, MT, USA. robert.smith@mso.umt.edu","Department of Computer Science, University of Montana, Missoula, USA"],"raw_orcid":"https://orcid.org/0000-0002-1864-9110","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Montana, 32 Campus Drive, Missoula, 59812, MT, USA. robert.smith@mso.umt.edu","institution_ids":["https://openalex.org/I6750721"]},{"raw_affiliation_string":"Department of Computer Science, University of Montana, Missoula, USA","institution_ids":["https://openalex.org/I6750721"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5046228650"],"corresponding_institution_ids":["https://openalex.org/I6750721"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7423,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.68043903,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"18","issue":"1","first_page":"469","last_page":"469"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.7911999821662903,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.7911999821662903,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.04190000146627426,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.03269999846816063,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8240993022918701},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.7071578502655029},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.6337363719940186},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.594536542892456},{"id":"https://openalex.org/keywords/cross-platform","display_name":"Cross-platform","score":0.5866572260856628},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5842389464378357},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5328336954116821},{"id":"https://openalex.org/keywords/json","display_name":"JSON","score":0.43842190504074097},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4381643533706665},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.42777347564697266},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.3519502878189087},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.34468382596969604},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2360510528087616},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.19588446617126465},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.18491420149803162}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8240993022918701},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.7071578502655029},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.6337363719940186},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.594536542892456},{"id":"https://openalex.org/C92400490","wikidata":"https://www.wikidata.org/wiki/Q174666","display_name":"Cross-platform","level":2,"score":0.5866572260856628},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5842389464378357},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5328336954116821},{"id":"https://openalex.org/C2780416260","wikidata":"https://www.wikidata.org/wiki/Q2063","display_name":"JSON","level":2,"score":0.43842190504074097},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4381643533706665},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.42777347564697266},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.3519502878189087},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.34468382596969604},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2360510528087616},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.19588446617126465},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.18491420149803162}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-017-1883-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1883-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1883-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29110634","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29110634","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:ee09e0e217614374a4ec3145eda64657","is_oa":true,"landing_page_url":"https://doaj.org/article/ee09e0e217614374a4ec3145eda64657","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 18, Iss 1, Pp 1-7 (2017)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5674804","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5674804","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1883-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1883-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1883-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2613026419","display_name":null,"funder_award_id":"1552240","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2767592750.pdf","grobid_xml":"https://content.openalex.org/works/W2767592750.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W75747240","https://openalex.org/W112108890","https://openalex.org/W1986171504","https://openalex.org/W2072099326","https://openalex.org/W2110057023","https://openalex.org/W2117300383","https://openalex.org/W2123008529","https://openalex.org/W2149384852","https://openalex.org/W2494842620","https://openalex.org/W2770942940"],"related_works":["https://openalex.org/W2753132265","https://openalex.org/W4234766820","https://openalex.org/W4250821095","https://openalex.org/W4301217393","https://openalex.org/W2267058868","https://openalex.org/W2922064259","https://openalex.org/W2742949799","https://openalex.org/W2799210984","https://openalex.org/W2012275481","https://openalex.org/W1570285834"],"abstract_inverted_index":{"BACKGROUND:":[0],"Despite":[1],"the":[2,105,112],"ubiquity":[3],"of":[4,108],"mass":[5],"spectrometry":[6],"(MS),":[7],"data":[8,44,53,110,119],"processing":[9,45,54,120],"tools":[10],"can":[11],"be":[12],"surprisingly":[13],"limited.":[14],"To":[15],"date,":[16],"there":[17],"is":[18,134],"no":[19],"stand-alone,":[20],"cross-platform":[21,85],"3-D":[22,126],"visualizer":[23],"for":[24,41,66],"MS":[25,43,49,68,76,109,118],"data.":[26,69],"Available":[27],"visualization":[28,127],"toolkits":[29],"require":[30],"large":[31],"libraries":[32],"with":[33,98,137],"multiple":[34],"dependencies":[35],"and":[36,87,121],"are":[37],"not":[38],"well":[39],"suited":[40],"custom":[42,117],"modules,":[46],"such":[47,78],"as":[48,79],"storage":[50],"systems":[51],"or":[52],"algorithms.":[55],"RESULTS:":[56],"We":[57],"present":[58],"JS-MS,":[59],"a":[60,80,94,99,138],"3-D,":[61],"modular":[62,95],"JavaScript":[63],"client":[64,92],"application":[65],"viewing":[67],"JS-MS":[70,115,133],"provides":[71],"several":[72],"advantages":[73],"over":[74],"existing":[75],"viewers,":[77],"dependency-free,":[81],"browser-based,":[82],"one":[83],"click,":[84],"install":[86],"better":[88],"navigation":[89,130],"interfaces.":[90],"The":[91],"includes":[93],"Java":[96],"backend":[97],"novel":[100],"streaming.mzML":[101],"parser":[102],"to":[103,111],"demonstrate":[104],"API-based":[106],"serving":[107],"viewer.":[113],"CONCLUSIONS:":[114],"enables":[116],"evaluation":[122],"by":[123],"providing":[124],"fast,":[125],"using":[128],"improved":[129],"without":[131],"dependencies.":[132],"publicly":[135],"available":[136],"GPLv2":[139],"license":[140],"at":[141],"github.com/optimusmoose/jsms.":[142]},"counts_by_year":[{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
