{"id":"https://openalex.org/W2761379268","doi":"https://doi.org/10.1186/s12859-017-1843-1","title":"Interpretation of microbiota-based diagnostics by explaining individual classifier decisions","display_name":"Interpretation of microbiota-based diagnostics by explaining individual classifier decisions","publication_year":2017,"publication_date":"2017-10-04","ids":{"openalex":"https://openalex.org/W2761379268","doi":"https://doi.org/10.1186/s12859-017-1843-1","mag":"2761379268","pmid":"https://pubmed.ncbi.nlm.nih.gov/28978318"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1843-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1843-1","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1186/s12859-017-1843-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109648644","display_name":"A. Eck","orcid":null},"institutions":[{"id":"https://openalex.org/I911458345","display_name":"Amsterdam UMC Location VUmc","ror":"https://ror.org/00q6h8f30","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833","https://openalex.org/I911458345"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"A. Eck","raw_affiliation_strings":["Department of Medical Microbiology and Infection Control, VU University medical center, Amsterdam, The Netherlands. a.eckhauer@vumc.nl","Department of Medical Microbiology and Infection Control, VU University medical center, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Medical Microbiology and Infection Control, VU University medical center, Amsterdam, The Netherlands. a.eckhauer@vumc.nl","institution_ids":[]},{"raw_affiliation_string":"Department of Medical Microbiology and Infection Control, VU University medical center, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I911458345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023346681","display_name":"Luisa Zintgraf","orcid":"https://orcid.org/0009-0003-5864-7632"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"L. M. Zintgraf","raw_affiliation_strings":["Informatics Institute, University of Amsterdam, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Informatics Institute, University of Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028673162","display_name":"E. F. J. de Groot","orcid":null},"institutions":[{"id":"https://openalex.org/I911458345","display_name":"Amsterdam UMC Location VUmc","ror":"https://ror.org/00q6h8f30","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833","https://openalex.org/I911458345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"E. F. J. de Groot","raw_affiliation_strings":["Department of Gastroenterology and Hepatology, VU University medical center, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Gastroenterology and Hepatology, VU University medical center, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I911458345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103027009","display_name":"Tim G. J. de Meij","orcid":null},"institutions":[{"id":"https://openalex.org/I911458345","display_name":"Amsterdam UMC Location VUmc","ror":"https://ror.org/00q6h8f30","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833","https://openalex.org/I911458345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"T. G. J. de Meij","raw_affiliation_strings":["Department of Pediatric Gastroenterology, VU University medical center, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Pediatric Gastroenterology, VU University medical center, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I911458345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083922034","display_name":"Taco Cohen","orcid":"https://orcid.org/0000-0003-3072-3405"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"T. S. Cohen","raw_affiliation_strings":["Informatics Institute, University of Amsterdam, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Informatics Institute, University of Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088106959","display_name":"Paul H. M. Savelkoul","orcid":"https://orcid.org/0000-0002-1318-2734"},"institutions":[{"id":"https://openalex.org/I911458345","display_name":"Amsterdam UMC Location VUmc","ror":"https://ror.org/00q6h8f30","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833","https://openalex.org/I911458345"]},{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"P. H. M. Savelkoul","raw_affiliation_strings":["Department of Medical Microbiology and Infection Control, VU University medical center, Amsterdam, The Netherlands","Department of Medical Microbiology, Maastricht University medical center, Maastricht, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Medical Microbiology and Infection Control, VU University medical center, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I911458345"]},{"raw_affiliation_string":"Department of Medical Microbiology, Maastricht University medical center, Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087368991","display_name":"Max Welling","orcid":"https://orcid.org/0000-0003-1484-2121"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]},{"id":"https://openalex.org/I109736498","display_name":"Canadian Institute for Advanced Research","ror":"https://ror.org/01sdtdd95","country_code":"CA","type":"facility","lineage":["https://openalex.org/I109736498"]}],"countries":["CA","NL"],"is_corresponding":false,"raw_author_name":"M. Welling","raw_affiliation_strings":["Canadian Institute for Advanced Research, Toronto, Canada","Informatics Institute, University of Amsterdam, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Canadian Institute for Advanced Research, Toronto, Canada","institution_ids":["https://openalex.org/I109736498"]},{"raw_affiliation_string":"Informatics Institute, University of Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041647608","display_name":"Andries E. Budding","orcid":"https://orcid.org/0000-0001-5128-5411"},"institutions":[{"id":"https://openalex.org/I911458345","display_name":"Amsterdam UMC Location VUmc","ror":"https://ror.org/00q6h8f30","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833","https://openalex.org/I911458345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"A. E. Budding","raw_affiliation_strings":["Department of Medical Microbiology and Infection Control, VU University medical center, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Medical Microbiology and Infection Control, VU University medical center, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I911458345"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5109648644"],"corresponding_institution_ids":["https://openalex.org/I911458345"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.6736,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.69589881,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"18","issue":"1","first_page":"441","last_page":"441"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11288","display_name":"Clostridium difficile and Clostridium perfringens research","score":0.9555000066757202,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9121999740600586,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.829685628414154},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.7143656015396118},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.702955961227417},{"id":"https://openalex.org/keywords/gut-flora","display_name":"Gut flora","score":0.6096664667129517},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5879761576652527},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2812519371509552},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.1276412308216095}],"concepts":[{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.829685628414154},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.7143656015396118},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.702955961227417},{"id":"https://openalex.org/C539455810","wikidata":"https://www.wikidata.org/wiki/Q739734","display_name":"Gut flora","level":2,"score":0.6096664667129517},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5879761576652527},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2812519371509552},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.1276412308216095}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004750","descriptor_name":"Enteral Nutrition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004750","descriptor_name":"Enteral Nutrition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004750","descriptor_name":"Enteral Nutrition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012867","descriptor_name":"Skin","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D012867","descriptor_name":"Skin","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D012867","descriptor_name":"Skin","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1186/s12859-017-1843-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1843-1","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28978318","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28978318","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:cris.maastrichtuniversity.nl:openaire/b0f0fe24-f2b2-4271-aadf-776dd08cbecd","is_oa":true,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/b0f0fe24-f2b2-4271-aadf-776dd08cbecd","pdf_url":null,"source":{"id":"https://openalex.org/S4306402616","display_name":"Research Publications (Maastricht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I34352273","host_organization_name":"Maastricht University","host_organization_lineage":["https://openalex.org/I34352273"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Eck, A, Zintgraf, L M, de Groot, E F J, de Meij, T G J, Cohen, T S, Savelkoul, P H M, Welling, M & Budding, A E 2017, 'Interpretation of microbiota-based diagnostics by explaining individual classifier decisions', BMC Bioinformatics, vol. 18, no. 1, 441. https://doi.org/10.1186/s12859-017-1843-1","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:dare.uva.nl:openaire_cris_publications/f4a1ba48-a134-441c-9076-cfe9c64dfe7e","is_oa":true,"landing_page_url":"https://handle.uba.uva.nl/personal/pure/en/publications/interpretation-of-microbiotabased-diagnostics-by-explaining-individual-classifier-decisions(f4a1ba48-a134-441c-9076-cfe9c64dfe7e).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Eck, A, Zintgraf, L M, de Groot, E F J, de Meij, T G J, Cohen, T S, Savelkoul, P H M, Welling, M & Budding, A E 2017, 'Interpretation of microbiota-based diagnostics by explaining individual classifier decisions', BMC Bioinformatics, vol. 18, 441. https://doi.org/10.1186/s12859-017-1843-1","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.amsterdamumc.nl:openaire_cris_publications/e4ca87ca-ec7b-4dad-b4e5-d862d811aadd","is_oa":true,"landing_page_url":"https://pure.amsterdamumc.nl/en/publications/e4ca87ca-ec7b-4dad-b4e5-d862d811aadd","pdf_url":"https://pure.amsterdamumc.nl/ws/files/158997990/Interpretation-of-microbiota-based-diagnostics-by-explaining-individual-classifier-decisions.pdf","source":{"id":"https://openalex.org/S7407055222","display_name":"Pure Amsterdam UMC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Eck, A, Zintgraf, L M, de Groot, E F J, de Meij, T G J, Cohen, T S, Savelkoul, P H M, Welling, M & Budding, A E 2017, 'Interpretation of microbiota-based diagnostics by explaining individual classifier decisions', BMC bioinformatics, vol. 18, no. 1, 441. https://doi.org/10.1186/s12859-017-1843-1","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:dare.uva.nl:publications/f4a1ba48-a134-441c-9076-cfe9c64dfe7e","is_oa":false,"landing_page_url":"http://hdl.handle.net/11245.1/f4a1ba48-a134-441c-9076-cfe9c64dfe7e","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:europepmc.org:4559930","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5628491","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:uvapub:oai:dare.uva.nl:publications/f4a1ba48-a134-441c-9076-cfe9c64dfe7e","is_oa":true,"landing_page_url":"https://dare.uva.nl/personal/pure/en/publications/interpretation-of-microbiotabased-diagnostics-by-explaining-individual-classifier-decisions(f4a1ba48-a134-441c-9076-cfe9c64dfe7e).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 18:441. BioMed Central","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:vumc:oai:pure.atira.dk:publications/d8f640c2-514e-49a1-adfb-a5d69ab4e2f9","is_oa":false,"landing_page_url":"https://research.vumc.nl/en/publications/d8f640c2-514e-49a1-adfb-a5d69ab4e2f9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 18(1):441. BioMed Central","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1843-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1843-1","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.699999988079071,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[{"id":"https://openalex.org/G3198777328","display_name":null,"funder_award_id":"95103009","funder_id":"https://openalex.org/F4320321007","funder_display_name":"ZonMw"}],"funders":[{"id":"https://openalex.org/F4320321007","display_name":"ZonMw","ror":"https://ror.org/01yaj9a77"},{"id":"https://openalex.org/F4320321014","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50"},{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1565356801","https://openalex.org/W1704427388","https://openalex.org/W1811186957","https://openalex.org/W1986076402","https://openalex.org/W1989889539","https://openalex.org/W2042926093","https://openalex.org/W2060536393","https://openalex.org/W2069317808","https://openalex.org/W2085284704","https://openalex.org/W2090711753","https://openalex.org/W2110235509","https://openalex.org/W2113211233","https://openalex.org/W2123914286","https://openalex.org/W2124996938","https://openalex.org/W2138550913","https://openalex.org/W2141734154","https://openalex.org/W2150165932","https://openalex.org/W2150480892","https://openalex.org/W2159786951","https://openalex.org/W2194951694","https://openalex.org/W2316828100","https://openalex.org/W2321988955","https://openalex.org/W2328023807","https://openalex.org/W2407765302","https://openalex.org/W3141586554"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3209574120","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":{"Application":[0],"of":[1,32,46,56],"a":[2,26],"method":[3],"for":[4,9],"explaining":[5],"individual":[6],"classifier":[7],"decisions":[8,31],"complex":[10],"microbiota":[11],"analysis":[12],"proved":[13],"feasible":[14],"and":[15,35],"opens":[16],"perspectives":[17],"on":[18],"personalized":[19],"therapy.":[20],"Providing":[21],"an":[22],"explanation":[23],"to":[24,39],"support":[25,49],"microbiota-based":[27],"diagnosis":[28],"could":[29],"guide":[30],"clinical":[33],"microbiologists,":[34],"has":[36],"the":[37,44,54],"potential":[38],"increase":[40],"their":[41],"confidence":[42],"in":[43],"outcome":[45],"such":[47],"decision":[48],"systems.":[50],"This":[51],"may":[52],"facilitate":[53],"development":[55],"new":[57],"diagnostic":[58],"applications.":[59]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-16T15:07:20.185449","created_date":"2025-10-10T00:00:00"}