{"id":"https://openalex.org/W2745665559","doi":"https://doi.org/10.1186/s12859-017-1775-9","title":"Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles","display_name":"Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles","publication_year":2017,"publication_date":"2017-08-17","ids":{"openalex":"https://openalex.org/W2745665559","doi":"https://doi.org/10.1186/s12859-017-1775-9","mag":"2745665559","pmid":"https://pubmed.ncbi.nlm.nih.gov/28818042"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1775-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1775-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1775-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1775-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062221063","display_name":"Kevin Bretonnel Cohen","orcid":"https://orcid.org/0000-0003-1749-8290"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"K. Bretonnel Cohen","raw_affiliation_strings":["Computational Bioscience Program, University of Colorado School of Medicine, Denver, CO, USA. kevin.cohen@gmail.com","Computational Bioscience Program, University of Colorado School of Medicine, Denver, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Bioscience Program, University of Colorado School of Medicine, Denver, CO, USA. kevin.cohen@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Computational Bioscience Program, University of Colorado School of Medicine, Denver, CO, USA","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022600328","display_name":"Arrick Lanfranchi","orcid":null},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arrick Lanfranchi","raw_affiliation_strings":["Department of Linguistics, University of Colorado at Boulder, Boulder, Colorado, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Linguistics, University of Colorado at Boulder, Boulder, Colorado, USA","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066098062","display_name":"Miji Choi","orcid":null},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Miji Joo-young Choi","raw_affiliation_strings":["School of Computing and Information Systems, The University of Melbourne, Melbourne, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing and Information Systems, The University of Melbourne, Melbourne, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083125835","display_name":"Michael Bada","orcid":"https://orcid.org/0000-0003-3366-4738"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Bada","raw_affiliation_strings":["Computational Bioscience Program, University of Colorado School of Medicine, Denver, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Bioscience Program, University of Colorado School of Medicine, Denver, CO, USA","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111881812","display_name":"William A. Baumgartner","orcid":null},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William A. Baumgartner","raw_affiliation_strings":["Computational Bioscience Program, University of Colorado School of Medicine, Denver, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Bioscience Program, University of Colorado School of Medicine, Denver, CO, USA","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040421225","display_name":"Natalya Panteleyeva","orcid":null},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Natalya Panteleyeva","raw_affiliation_strings":["Computational Bioscience Program, University of Colorado School of Medicine, Denver, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Bioscience Program, University of Colorado School of Medicine, Denver, CO, USA","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067214173","display_name":"Karin Verspoor","orcid":"https://orcid.org/0000-0002-8661-1544"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Karin Verspoor","raw_affiliation_strings":["School of Computing and Information Systems, The University of Melbourne, Melbourne, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing and Information Systems, The University of Melbourne, Melbourne, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017464054","display_name":"Martha Palmer","orcid":"https://orcid.org/0000-0001-9864-6974"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]},{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martha Palmer","raw_affiliation_strings":["Computational Bioscience Program, University of Colorado School of Medicine, Denver, CO, USA","Department of Linguistics, University of Colorado at Boulder, Boulder, Colorado, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Bioscience Program, University of Colorado School of Medicine, Denver, CO, USA","institution_ids":["https://openalex.org/I921990950"]},{"raw_affiliation_string":"Department of Linguistics, University of Colorado at Boulder, Boulder, Colorado, USA","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041860080","display_name":"Lawrence Hunter","orcid":"https://orcid.org/0000-0003-1455-3370"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lawrence E. Hunter","raw_affiliation_strings":["Computational Bioscience Program, University of Colorado School of Medicine, Denver, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Bioscience Program, University of Colorado School of Medicine, Denver, CO, USA","institution_ids":["https://openalex.org/I921990950"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5062221063"],"corresponding_institution_ids":["https://openalex.org/I921990950"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.916,"has_fulltext":true,"cited_by_count":59,"citation_normalized_percentile":{"value":0.91774888,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"18","issue":"1","first_page":"372","last_page":"372"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.0017000000225380063,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coreference","display_name":"Coreference","score":0.9545642733573914},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8328281044960022},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7997025847434998},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.7061140537261963},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5786365270614624},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5653558969497681},{"id":"https://openalex.org/keywords/noun-phrase","display_name":"Noun phrase","score":0.49249085783958435},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.48929521441459656},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.46098312735557556},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.45579230785369873},{"id":"https://openalex.org/keywords/referent","display_name":"Referent","score":0.4475899934768677},{"id":"https://openalex.org/keywords/noun","display_name":"Noun","score":0.2922555208206177},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.21028125286102295}],"concepts":[{"id":"https://openalex.org/C28076734","wikidata":"https://www.wikidata.org/wiki/Q63087","display_name":"Coreference","level":3,"score":0.9545642733573914},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8328281044960022},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7997025847434998},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.7061140537261963},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5786365270614624},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5653558969497681},{"id":"https://openalex.org/C153962237","wikidata":"https://www.wikidata.org/wiki/Q1401131","display_name":"Noun phrase","level":3,"score":0.49249085783958435},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.48929521441459656},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.46098312735557556},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.45579230785369873},{"id":"https://openalex.org/C2777096784","wikidata":"https://www.wikidata.org/wiki/Q3826351","display_name":"Referent","level":2,"score":0.4475899934768677},{"id":"https://openalex.org/C121934690","wikidata":"https://www.wikidata.org/wiki/Q1084","display_name":"Noun","level":2,"score":0.2922555208206177},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.21028125286102295},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1186/s12859-017-1775-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1775-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1775-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28818042","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28818042","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/256742","is_oa":true,"landing_page_url":"http://hdl.handle.net/11343/256742","pdf_url":"http://hdl.handle.net/11343/256742","source":{"id":"https://openalex.org/S4377196259","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:cuscholar:5q47rp394","is_oa":true,"landing_page_url":"https://scholar.colorado.edu/concern/articles/5q47rp394","pdf_url":null,"source":{"id":"https://openalex.org/S4306401957","display_name":"CU Scholar (University of Colorado Boulder)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I188538660","host_organization_name":"University of Colorado Boulder","host_organization_lineage":["https://openalex.org/I188538660"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:scholar.colorado.edu:ling_facpapers-1004","is_oa":true,"landing_page_url":"https://scholar.colorado.edu/ling_facpapers/3","pdf_url":null,"source":{"id":"https://openalex.org/S4306402320","display_name":"CU Scholar (University of Colorado Boulder)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I188538660","host_organization_name":"University of Colorado Boulder","host_organization_lineage":["https://openalex.org/I188538660"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Linguistics Faculty Contributions","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:808c258a08804fd3871345b137a279ca","is_oa":true,"landing_page_url":"https://doaj.org/article/808c258a08804fd3871345b137a279ca","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 18, Iss 1, Pp 1-14 (2017)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/27556644","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5561560","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5561560","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1775-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1775-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1775-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1090341790","display_name":null,"funder_award_id":"3G08 LM009639-02S1","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G3459733074","display_name":null,"funder_award_id":"DP150101550","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G3531291683","display_name":null,"funder_award_id":"R01LM008111","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G3564336810","display_name":null,"funder_award_id":"G08 LM009639","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G3703247045","display_name":null,"funder_award_id":"W911NF-14-C-0109","funder_id":"https://openalex.org/F4320332180","funder_display_name":"Defense Advanced Research Projects Agency"},{"id":"https://openalex.org/G6768547968","display_name":null,"funder_award_id":"2R01LM009254","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320332180","display_name":"Defense Advanced Research Projects Agency","ror":"https://ror.org/02caytj08"},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2745665559.pdf","grobid_xml":"https://content.openalex.org/works/W2745665559.grobid-xml"},"referenced_works_count":102,"referenced_works":["https://openalex.org/W49621856","https://openalex.org/W55204438","https://openalex.org/W87744087","https://openalex.org/W355162895","https://openalex.org/W605075121","https://openalex.org/W625326272","https://openalex.org/W1522587593","https://openalex.org/W1528859321","https://openalex.org/W1534477342","https://openalex.org/W1577815940","https://openalex.org/W1582771813","https://openalex.org/W1608193633","https://openalex.org/W1773573974","https://openalex.org/W1849985792","https://openalex.org/W1919684990","https://openalex.org/W1965693266","https://openalex.org/W1967112791","https://openalex.org/W1981797826","https://openalex.org/W1985463960","https://openalex.org/W1991106399","https://openalex.org/W1991258923","https://openalex.org/W1992722532","https://openalex.org/W2003601914","https://openalex.org/W2004111828","https://openalex.org/W2007164090","https://openalex.org/W2014692636","https://openalex.org/W2016071726","https://openalex.org/W2018874418","https://openalex.org/W2021331223","https://openalex.org/W2021581162","https://openalex.org/W2030103067","https://openalex.org/W2031185328","https://openalex.org/W2036958005","https://openalex.org/W2040298461","https://openalex.org/W2055032581","https://openalex.org/W2075263902","https://openalex.org/W2075322787","https://openalex.org/W2075472325","https://openalex.org/W2083342361","https://openalex.org/W2091483147","https://openalex.org/W2091779953","https://openalex.org/W2093157872","https://openalex.org/W2093160060","https://openalex.org/W2093664665","https://openalex.org/W2098201295","https://openalex.org/W2098345921","https://openalex.org/W2101268022","https://openalex.org/W2104012281","https://openalex.org/W2104148262","https://openalex.org/W2105468141","https://openalex.org/W2106398919","https://openalex.org/W2106604217","https://openalex.org/W2107005506","https://openalex.org/W2110408238","https://openalex.org/W2112251443","https://openalex.org/W2120354757","https://openalex.org/W2123171788","https://openalex.org/W2123681218","https://openalex.org/W2125260686","https://openalex.org/W2128996912","https://openalex.org/W2130158090","https://openalex.org/W2130359236","https://openalex.org/W2132288458","https://openalex.org/W2135401049","https://openalex.org/W2135411671","https://openalex.org/W2137019100","https://openalex.org/W2139008537","https://openalex.org/W2141660212","https://openalex.org/W2150131767","https://openalex.org/W2152228269","https://openalex.org/W2153393891","https://openalex.org/W2154474435","https://openalex.org/W2162228163","https://openalex.org/W2163794943","https://openalex.org/W2164455818","https://openalex.org/W2167490942","https://openalex.org/W2169621150","https://openalex.org/W2250435772","https://openalex.org/W2250892234","https://openalex.org/W2251746595","https://openalex.org/W2251936842","https://openalex.org/W2252268701","https://openalex.org/W2293312434","https://openalex.org/W2396229257","https://openalex.org/W2396767181","https://openalex.org/W2403515192","https://openalex.org/W2530395991","https://openalex.org/W2599871597","https://openalex.org/W2624892763","https://openalex.org/W2625465398","https://openalex.org/W2626900720","https://openalex.org/W2730152080","https://openalex.org/W2759927689","https://openalex.org/W2786519160","https://openalex.org/W2911699369","https://openalex.org/W2914431807","https://openalex.org/W3088539955","https://openalex.org/W4206714178","https://openalex.org/W4211148418","https://openalex.org/W4211165624","https://openalex.org/W4230403639","https://openalex.org/W6759374832"],"related_works":["https://openalex.org/W29388793","https://openalex.org/W3215967424","https://openalex.org/W2563775674","https://openalex.org/W2396571892","https://openalex.org/W4300167284","https://openalex.org/W2164455818","https://openalex.org/W2171828761","https://openalex.org/W3120396479","https://openalex.org/W2251351510","https://openalex.org/W1523977890"],"abstract_inverted_index":{"BACKGROUND:":[0],"Coreference":[1],"resolution":[2,22,174,260,324,344],"is":[3,115,365],"the":[4,13,34,42,45,57,61,112,128,132,166,196,203,207,216,227,231,242,262,270,280,292,299,315,336,339,354,361],"task":[5],"of":[6,20,27,44,47,131,144,150,179,191,195,200,223,230,241,256,272,314,317,353],"finding":[7],"strings":[8],"in":[9,30,49,206,215,226,238,261,269,274,291,298,309,345],"text":[10],"that":[11,114,234,283,286,332,338,360],"have":[12,235],"same":[14],"referent":[15],"as":[16],"other":[17],"strings.":[18],"Failures":[19],"coreference":[21,48,70,79,173,257,259,323,343],"are":[23,295,333,348],"a":[24,140,183,249,318,327],"common":[25],"cause":[26],"false":[28],"negatives":[29],"information":[31],"extraction":[32],"from":[33,103,136,351],"scientific":[35,263],"literature.":[36,264],"In":[37],"order":[38],"to":[39,53,107,117,127,147,157,303,306],"better":[40],"understand":[41],"nature":[43],"phenomenon":[46,271],"biomedical":[50,300],"publications":[51],"and":[52,83,155,258,277,279,321,357],"increase":[54,222],"performance":[55,162,316,363],"on":[56,111,165],"task,":[58],"we":[59],"annotated":[60,77,237],"Colorado":[62],"Richly":[63],"Annotated":[64],"Full":[65],"Text":[66],"(CRAFT)":[67],"corpus":[68,74,122],"with":[69,78,95,326,335],"relations.":[71],"RESULTS:":[72],"The":[73,91,120,246,265,312],"was":[75,163],"manually":[76],"relations,":[80],"including":[81],"identity":[82],"appositives":[84],"for":[85,220,253,341],"all":[86],"coreferring":[87],"base":[88],"noun":[89],"phrases.":[90],"OntoNotes":[92],"annotation":[93,149],"guidelines,":[94],"minor":[96],"adaptations,":[97],"were":[98],"used.":[99],"Interannotator":[100],"agreement":[101],"ranges":[102],"0.480":[104],"(entity-based":[105],"CEAF)":[106],"0.858":[108],"(Class-B3),":[109],"depending":[110],"metric":[113],"used":[116],"assess":[118],"it.":[119],"resulting":[121],"adds":[123],"nearly":[124],"30,000":[125],"annotations":[126],"previous":[129],"release":[130],"CRAFT":[133,243],"corpus.":[134,244],"Differences":[135],"related":[137],"projects":[138],"include":[139],"much":[141],"broader":[142],"definition":[143],"markables,":[145],"connection":[146,156],"extensive":[148],"several":[151],"domain-relevant":[152],"semantic":[153,228],"classes,":[154],"complete":[158],"syntactic":[159],"annotation.":[160],"Tool":[161],"benchmarked":[164],"data.":[167],"A":[168],"publicly":[169,319],"available":[170,320],"out-of-the-box,":[171],"general-domain":[172],"system":[175,187,325,329],"achieved":[176,188],"an":[177,189,221],"F-measure":[178,190],"0.14":[180],"(B3),":[181],"while":[182],"simple":[184],"domain-adapted":[185,328],"rule-based":[186],"0.42.":[192],"An":[193],"ensemble":[194],"two":[197],"reached":[198],"F":[199],"0.46.":[201],"Following":[202],"IDENTITY":[204],"chains":[205],"data":[208,251],"would":[209,287],"add":[210],"106,263":[211],"additional":[212],"named":[213],"entities":[214],"full":[217],"97-paper":[218],"corpus,":[219],"76%":[224],"percent":[225],"classes":[229,308],"eight":[232],"ontologies":[233],"been":[236],"earlier":[239],"versions":[240],"CONCLUSIONS:":[245],"project":[247],"produced":[248,330],"large":[250],"set":[252],"further":[254],"investigation":[255],"work":[266],"raised":[267],"issues":[268],"reference":[273],"this":[275,346],"domain":[276,294,301],"genre,":[278],"paper":[281],"proposes":[282],"many":[284],"mentions":[285],"be":[288],"considered":[289],"generic":[290,297],"general":[293,355],"not":[296],"due":[302],"their":[304],"referents":[305],"specific":[307],"domain-specific":[310],"ontologies.":[311],"comparison":[313],"well-understood":[322],"results":[331],"consistent":[334],"notion":[337],"requirements":[340],"successful":[342],"genre":[347],"quite":[349,366],"different":[350],"those":[352],"domain,":[356],"also":[358],"suggest":[359],"baseline":[362],"difference":[364],"large.":[367]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":1}],"updated_date":"2026-05-14T08:36:36.166977","created_date":"2025-10-10T00:00:00"}
