{"id":"https://openalex.org/W2586898076","doi":"https://doi.org/10.1186/s12859-017-1753-2","title":"Quantification of tumour evolution and heterogeneity via Bayesian epiallele detection","display_name":"Quantification of tumour evolution and heterogeneity via Bayesian epiallele detection","publication_year":2017,"publication_date":"2017-07-25","ids":{"openalex":"https://openalex.org/W2586898076","doi":"https://doi.org/10.1186/s12859-017-1753-2","mag":"2586898076","pmid":"https://pubmed.ncbi.nlm.nih.gov/28743252"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1753-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1753-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1753-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1753-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021028666","display_name":"James E. Barrett","orcid":"https://orcid.org/0000-0002-1274-327X"},"institutions":[{"id":"https://openalex.org/I2801316944","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2801316944"]},{"id":"https://openalex.org/I4210147892","display_name":"CRUK Lung Cancer Centre of Excellence","ror":"https://ror.org/04nm2mq63","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210147892"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"James E. Barrett","raw_affiliation_strings":["UCL Cancer Institute, University College London, London, UK. regmjeb@ucl.ac.uk","UCL Cancer Institute, University College London, London, UK"],"raw_orcid":"https://orcid.org/0000-0002-1274-327X","affiliations":[{"raw_affiliation_string":"UCL Cancer Institute, University College London, London, UK. regmjeb@ucl.ac.uk","institution_ids":["https://openalex.org/I2801316944","https://openalex.org/I4210147892","https://openalex.org/I45129253"]},{"raw_affiliation_string":"UCL Cancer Institute, University College London, London, UK","institution_ids":["https://openalex.org/I4210147892","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055292391","display_name":"Andrew Feber","orcid":"https://orcid.org/0000-0001-5282-0498"},"institutions":[{"id":"https://openalex.org/I4210147892","display_name":"CRUK Lung Cancer Centre of Excellence","ror":"https://ror.org/04nm2mq63","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210147892"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Feber","raw_affiliation_strings":["UCL Cancer Institute, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UCL Cancer Institute, University College London, London, UK","institution_ids":["https://openalex.org/I4210147892","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048365807","display_name":"Javier Herrero","orcid":"https://orcid.org/0000-0001-7313-717X"},"institutions":[{"id":"https://openalex.org/I4210147892","display_name":"CRUK Lung Cancer Centre of Excellence","ror":"https://ror.org/04nm2mq63","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210147892"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Javier Herrero","raw_affiliation_strings":["UCL Cancer Institute, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UCL Cancer Institute, University College London, London, UK","institution_ids":["https://openalex.org/I4210147892","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039804528","display_name":"Miljana Tani\u0107","orcid":"https://orcid.org/0000-0003-3102-776X"},"institutions":[{"id":"https://openalex.org/I4210147892","display_name":"CRUK Lung Cancer Centre of Excellence","ror":"https://ror.org/04nm2mq63","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210147892"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Miljana Tanic","raw_affiliation_strings":["UCL Cancer Institute, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UCL Cancer Institute, University College London, London, UK","institution_ids":["https://openalex.org/I4210147892","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025813081","display_name":"Gareth A. Wilson","orcid":"https://orcid.org/0000-0002-5703-9710"},"institutions":[{"id":"https://openalex.org/I2801081054","display_name":"The Francis Crick Institute","ror":"https://ror.org/04tnbqb63","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2801081054"]},{"id":"https://openalex.org/I4210147892","display_name":"CRUK Lung Cancer Centre of Excellence","ror":"https://ror.org/04nm2mq63","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210147892"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gareth A. Wilson","raw_affiliation_strings":["The Francis Crick Institute, London, UK","UCL Cancer Institute, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Francis Crick Institute, London, UK","institution_ids":["https://openalex.org/I2801081054"]},{"raw_affiliation_string":"UCL Cancer Institute, University College London, London, UK","institution_ids":["https://openalex.org/I4210147892","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016475369","display_name":"Charles Swanton","orcid":"https://orcid.org/0000-0002-4299-3018"},"institutions":[{"id":"https://openalex.org/I1340918713","display_name":"University College London Hospitals NHS Foundation Trust","ror":"https://ror.org/042fqyp44","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1340918713"]},{"id":"https://openalex.org/I2801081054","display_name":"The Francis Crick Institute","ror":"https://ror.org/04tnbqb63","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2801081054"]},{"id":"https://openalex.org/I4210147892","display_name":"CRUK Lung Cancer Centre of Excellence","ror":"https://ror.org/04nm2mq63","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210147892"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Charles Swanton","raw_affiliation_strings":["Cancer Research U.K. Lung Cancer Centre of Excellence, UCL Cancer Institute, London, UK","The Francis Crick Institute, London, UK","UCL Cancer Institute, University College London, London, UK","University College London Hospitals NHS Foundation Trust, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research U.K. Lung Cancer Centre of Excellence, UCL Cancer Institute, London, UK","institution_ids":["https://openalex.org/I4210147892","https://openalex.org/I45129253"]},{"raw_affiliation_string":"The Francis Crick Institute, London, UK","institution_ids":["https://openalex.org/I2801081054"]},{"raw_affiliation_string":"UCL Cancer Institute, University College London, London, UK","institution_ids":["https://openalex.org/I4210147892","https://openalex.org/I45129253"]},{"raw_affiliation_string":"University College London Hospitals NHS Foundation Trust, London, UK","institution_ids":["https://openalex.org/I1340918713","https://openalex.org/I45129253"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017588786","display_name":"Stephan Beck","orcid":"https://orcid.org/0000-0001-5290-2151"},"institutions":[{"id":"https://openalex.org/I4210147892","display_name":"CRUK Lung Cancer Centre of Excellence","ror":"https://ror.org/04nm2mq63","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210147892"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stephan Beck","raw_affiliation_strings":["UCL Cancer Institute, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UCL Cancer Institute, University College London, London, UK","institution_ids":["https://openalex.org/I4210147892","https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5021028666"],"corresponding_institution_ids":["https://openalex.org/I2801316944","https://openalex.org/I4210147892","https://openalex.org/I45129253"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":1563,"currency":"EUR","value_usd":1685},"fwci":0.6212,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.65462435,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"18","issue":"1","first_page":"354","last_page":"354"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.8162000179290771,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.8162000179290771,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.07240000367164612,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.018400000408291817,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dnam","display_name":"dNaM","score":0.7832577228546143},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7224571704864502},{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.6795077323913574},{"id":"https://openalex.org/keywords/tumour-heterogeneity","display_name":"Tumour heterogeneity","score":0.6154119968414307},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.5359599590301514},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5305735468864441},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49034619331359863},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4848836362361908},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.41501832008361816},{"id":"https://openalex.org/keywords/quantitative-trait-locus","display_name":"Quantitative trait locus","score":0.4109261929988861},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.37901023030281067},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3305942416191101},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.29495102167129517},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.2724553346633911},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1530168056488037},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.11848285794258118}],"concepts":[{"id":"https://openalex.org/C2775921022","wikidata":"https://www.wikidata.org/wiki/Q25104749","display_name":"dNaM","level":5,"score":0.7832577228546143},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7224571704864502},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.6795077323913574},{"id":"https://openalex.org/C2777306565","wikidata":"https://www.wikidata.org/wiki/Q15917291","display_name":"Tumour heterogeneity","level":3,"score":0.6154119968414307},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.5359599590301514},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5305735468864441},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49034619331359863},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4848836362361908},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.41501832008361816},{"id":"https://openalex.org/C81941488","wikidata":"https://www.wikidata.org/wiki/Q853421","display_name":"Quantitative trait locus","level":3,"score":0.4109261929988861},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.37901023030281067},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3305942416191101},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.29495102167129517},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.2724553346633911},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1530168056488037},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.11848285794258118},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057890","descriptor_name":"Epigenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057890","descriptor_name":"Epigenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057890","descriptor_name":"Epigenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057890","descriptor_name":"Epigenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057890","descriptor_name":"Epigenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057890","descriptor_name":"Epigenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-017-1753-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1753-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1753-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28743252","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28743252","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5526259","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5526259","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:ba277ec5316f4a1ca00787659b50436d","is_oa":false,"landing_page_url":"https://doaj.org/article/ba277ec5316f4a1ca00787659b50436d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 18, Iss 1, Pp 1-10 (2017)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1753-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1753-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1753-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1099494159","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G119964413","display_name":null,"funder_award_id":"FP7/2007\u20132013","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G182428912","display_name":null,"funder_award_id":"NNF15OC0016584","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G1829357131","display_name":null,"funder_award_id":"C11496 / A17786","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G1872847433","display_name":null,"funder_award_id":"10169","funder_id":"https://openalex.org/F4320312060","funder_display_name":"Francis Crick Institute"},{"id":"https://openalex.org/G1996051669","display_name":null,"funder_award_id":"M231-CD1","funder_id":"https://openalex.org/F4320320320","funder_display_name":"Rosetrees Trust"},{"id":"https://openalex.org/G2473961061","display_name":null,"funder_award_id":"FP7/2007\u20132013","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"},{"id":"https://openalex.org/G2646115653","display_name":null,"funder_award_id":"FC001169","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G3029103535","display_name":null,"funder_award_id":"99148","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G3080254022","display_name":null,"funder_award_id":"FCI01","funder_id":"https://openalex.org/F4320312060","funder_display_name":"Francis Crick Institute"},{"id":"https://openalex.org/G3486387481","display_name":null,"funder_award_id":"20466","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G3553553663","display_name":null,"funder_award_id":"608765","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G4431183167","display_name":null,"funder_award_id":"A17786","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G4598959000","display_name":null,"funder_award_id":"19310","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G4970544358","display_name":null,"funder_award_id":"FC001169","funder_id":"https://openalex.org/F4320312060","funder_display_name":"Francis Crick Institute"},{"id":"https://openalex.org/G5043054308","display_name":null,"funder_award_id":"608765","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G6520905904","display_name":null,"funder_award_id":"MR/M025411/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G6523146432","display_name":null,"funder_award_id":"MR/P014712/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G6768695438","display_name":null,"funder_award_id":"608765","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G6923477830","display_name":null,"funder_award_id":"17786","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G7141067193","display_name":null,"funder_award_id":"1309-00006B","funder_id":"https://openalex.org/F4320309756","funder_display_name":"Strategiske Forskningsr\u00e5d"},{"id":"https://openalex.org/G7554390214","display_name":null,"funder_award_id":"BRC275/CN/SB/101330","funder_id":"https://openalex.org/F4320337282","funder_display_name":"NIHR Sheffield Biomedical Research Centre"},{"id":"https://openalex.org/G758698081","display_name":null,"funder_award_id":"FCI01","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G8003459845","display_name":null,"funder_award_id":"FC001169","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G8634521478","display_name":null,"funder_award_id":"FC001169","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G8636463254","display_name":null,"funder_award_id":"608765","funder_id":"https://openalex.org/F4320312060","funder_display_name":"Francis Crick Institute"},{"id":"https://openalex.org/G8672850360","display_name":"Development of the UroMark assay. A non-invasive test for the detection of bladder cancer in urinary sediment cells","funder_award_id":"MR/M025411/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G8727900882","display_name":null,"funder_award_id":"MR/FC001169/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320306163","display_name":"Prostate Cancer Foundation","ror":"https://ror.org/01npwtv09"},{"id":"https://openalex.org/F4320306260","display_name":"Breast Cancer Research Foundation","ror":"https://ror.org/0348ff195"},{"id":"https://openalex.org/F4320309756","display_name":"Strategiske Forskningsr\u00e5d","ror":"https://ror.org/03ge1nb22"},{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320312060","display_name":"Francis Crick Institute","ror":"https://ror.org/04tnbqb63"},{"id":"https://openalex.org/F4320319985","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67"},{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320320285","display_name":"King's College London","ror":"https://ror.org/0220mzb33"},{"id":"https://openalex.org/F4320320286","display_name":"University College London","ror":"https://ror.org/02jx3x895"},{"id":"https://openalex.org/F4320320320","display_name":"Rosetrees Trust","ror":"https://ror.org/04e3zg361"},{"id":"https://openalex.org/F4320325957","display_name":"Novo Nordisk Fonden","ror":"https://ror.org/04txyc737"},{"id":"https://openalex.org/F4320330795","display_name":"CRUK Lung Cancer Centre of Excellence","ror":"https://ror.org/04nm2mq63"},{"id":"https://openalex.org/F4320332898","display_name":"Stand Up To Cancer","ror":"https://ror.org/01dmpb598"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320337282","display_name":"NIHR Sheffield Biomedical Research Centre","ror":"https://ror.org/055qwb732"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2586898076.pdf","grobid_xml":"https://content.openalex.org/works/W2586898076.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1657324220","https://openalex.org/W1910757327","https://openalex.org/W1924282698","https://openalex.org/W1956892253","https://openalex.org/W1969894243","https://openalex.org/W1990021188","https://openalex.org/W2031913559","https://openalex.org/W2046646392","https://openalex.org/W2053309035","https://openalex.org/W2056677678","https://openalex.org/W2058815839","https://openalex.org/W2069313265","https://openalex.org/W2107949418","https://openalex.org/W2114970231","https://openalex.org/W2122110341","https://openalex.org/W2125269686","https://openalex.org/W2144035153","https://openalex.org/W2151409320","https://openalex.org/W2164214190","https://openalex.org/W2164327622","https://openalex.org/W2168810759","https://openalex.org/W2331800864","https://openalex.org/W2581467944","https://openalex.org/W2596405656","https://openalex.org/W2609243345","https://openalex.org/W2617427009","https://openalex.org/W4210516674","https://openalex.org/W4298033698","https://openalex.org/W7062094351"],"related_works":["https://openalex.org/W3044392860","https://openalex.org/W4291019124","https://openalex.org/W2214376880","https://openalex.org/W4388688106","https://openalex.org/W3212149434","https://openalex.org/W2073893804","https://openalex.org/W2291484187","https://openalex.org/W3203841708","https://openalex.org/W2951642344","https://openalex.org/W4298427981"],"abstract_inverted_index":{"BACKGROUND:":[0],"Epigenetic":[1],"heterogeneity":[2],"within":[3,210],"a":[4,58,94,121,198,224],"tumour":[5,12,92,104,156,177,212],"can":[6,163,179],"play":[7],"an":[8,136],"important":[9],"role":[10],"in":[11,67],"evolution":[13],"and":[14,93,120,166,193,196,206,222],"the":[15,26,34,71,116,129,148,171,176,181,185],"emergence":[16],"of":[17,28,70,88,114,173,184,200,208,218,226],"resistance":[18],"to":[19,61,78,106,133,154],"treatment.":[20],"It":[21],"is":[22,142,231],"increasingly":[23],"recognised":[24],"that":[25,189],"study":[27],"DNA":[29],"methylation":[30],"(DNAm)":[31],"patterns":[32],"along":[33],"genome":[35],"-":[36,39],"so-called":[37],"'epialleles'":[38],"offers":[40],"greater":[41,108],"insight":[42],"into":[43],"epigenetic":[44,202,227],"dynamics":[45],"than":[46],"conventional":[47],"analyses":[48],"which":[49,63,134,155],"examine":[50],"DNAm":[51,118],"marks":[52],"individually.":[53],"RESULTS:":[54],"We":[55,74],"have":[56],"developed":[57],"Bayesian":[59],"model":[60,99],"infer":[62,180],"epialleles":[64,174,188,209],"are":[65,124,158],"present":[66],"multiple":[68,86,211],"regions":[69,87,105,213],"same":[72],"tumour.":[73],"apply":[75],"our":[76],"method":[77],"reduced":[79],"representation":[80],"bisulfite":[81],"sequencing":[82,138],"(RRBS)":[83],"data":[84],"from":[85,102,128,141],"one":[89],"lung":[90],"cancer":[91,194],"matched":[95],"normal":[96,161,192],"sample.":[97],"The":[98,111,152],"borrows":[100],"information":[101],"all":[103,125],"leverage":[107],"statistical":[109],"power.":[110],"total":[112],"number":[113],"epialleles,":[115,221],"epiallele":[117,135],"patterns,":[119],"noise":[122],"hyperparameter":[123],"automatically":[126],"inferred":[127],"data.":[130],"Uncertainty":[131],"as":[132],"observed":[137],"read":[139],"originated":[140],"explicitly":[143],"incorporated":[144],"by":[145],"marginalising":[146],"over":[147],"appropriate":[149],"posterior":[150],"densities.":[151],"degree":[153],"samples":[157],"contaminated":[159],"with":[160],"tissue":[162],"be":[164],"estimated":[165],"corrected":[167],"for.":[168],"By":[169],"tracing":[170],"distribution":[172],"throughout":[175],"we":[178],"phylogenetic":[182,215],"history":[183],"tumour,":[186],"identify":[187],"differ":[190],"between":[191],"tissue,":[195],"define":[197],"measure":[199,225],"global":[201],"disorder.":[203],"CONCLUSIONS:":[204],"Detection":[205],"comparison":[207],"enables":[214],"analyses,":[216],"identification":[217],"differentially":[219],"expressed":[220],"provides":[223],"heterogeneity.":[228],"R":[229],"code":[230],"available":[232],"at":[233],"github.com/james-e-barrett.":[234]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2026-08-29T07:29:34.045763","created_date":"2025-10-10T00:00:00"}
