{"id":"https://openalex.org/W2613587040","doi":"https://doi.org/10.1186/s12859-017-1666-0","title":"LASSIE: simulating large-scale models of biochemical systems on GPUs","display_name":"LASSIE: simulating large-scale models of biochemical systems on GPUs","publication_year":2017,"publication_date":"2017-05-09","ids":{"openalex":"https://openalex.org/W2613587040","doi":"https://doi.org/10.1186/s12859-017-1666-0","mag":"2613587040","pmid":"https://pubmed.ncbi.nlm.nih.gov/28486952"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1666-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1666-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1666-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1666-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056055676","display_name":"Andrea Tangherloni","orcid":"https://orcid.org/0000-0002-5856-4453"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea Tangherloni","raw_affiliation_strings":["Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, Milano, 20126, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, Milano, 20126, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043650939","display_name":"Marco S. Nobile","orcid":"https://orcid.org/0000-0002-7692-7203"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco S. Nobile","raw_affiliation_strings":["Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, Milano, 20126, Italy","SYSBIO.IT Centre of Systems Biology, Piazza della Scienza 2, Milano, 20126, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, Milano, 20126, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"SYSBIO.IT Centre of Systems Biology, Piazza della Scienza 2, Milano, 20126, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072712347","display_name":"Daniela Besozzi","orcid":"https://orcid.org/0000-0001-5532-3059"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Daniela Besozzi","raw_affiliation_strings":["Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, Milano, 20126, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, Milano, 20126, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073163964","display_name":"Giancarlo Mauri","orcid":"https://orcid.org/0000-0003-3520-4022"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giancarlo Mauri","raw_affiliation_strings":["Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, Milano, 20126, Italy","SYSBIO.IT Centre of Systems Biology, Piazza della Scienza 2, Milano, 20126, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, Milano, 20126, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"SYSBIO.IT Centre of Systems Biology, Piazza della Scienza 2, Milano, 20126, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013723473","display_name":"Paolo Cazzaniga","orcid":"https://orcid.org/0000-0001-7780-0434"},"institutions":[{"id":"https://openalex.org/I11039511","display_name":"University of Bergamo","ror":"https://ror.org/02mbd5571","country_code":"IT","type":"education","lineage":["https://openalex.org/I11039511"]},{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Paolo Cazzaniga","raw_affiliation_strings":["Department of Human and Social Sciences, University of Bergamo, Piazzale Sant'Agostino 2, Bergamo, 24129, Italy. paolo.cazzaniga@unibg.it","SYSBIO.IT Centre of Systems Biology, Piazza della Scienza 2, Milano, 20126, Italy. paolo.cazzaniga@unibg.it","Department of Human and Social Sciences, University of Bergamo, Piazzale Sant'Agostino 2, Bergamo, 24129, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Human and Social Sciences, University of Bergamo, Piazzale Sant'Agostino 2, Bergamo, 24129, Italy. paolo.cazzaniga@unibg.it","institution_ids":["https://openalex.org/I11039511"]},{"raw_affiliation_string":"SYSBIO.IT Centre of Systems Biology, Piazza della Scienza 2, Milano, 20126, Italy. paolo.cazzaniga@unibg.it","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Human and Social Sciences, University of Bergamo, Piazzale Sant'Agostino 2, Bergamo, 24129, Italy","institution_ids":["https://openalex.org/I11039511"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5013723473"],"corresponding_institution_ids":["https://openalex.org/I11039511","https://openalex.org/I66752286"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.6838,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.84090066,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"18","issue":"1","first_page":"246","last_page":"246"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9847999811172485,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6802066564559937},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5670667886734009},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.535943865776062},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.43466517329216003},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.4074777662754059},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3232513666152954},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3209805190563202},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21692785620689392},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09054192900657654},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.06999078392982483},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.05681794881820679}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6802066564559937},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5670667886734009},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.535943865776062},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.43466517329216003},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.4074777662754059},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3232513666152954},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3209805190563202},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21692785620689392},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09054192900657654},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.06999078392982483},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.05681794881820679},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001669","descriptor_name":"Biochemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001669","descriptor_name":"Biochemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001669","descriptor_name":"Biochemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1186/s12859-017-1666-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1666-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1666-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28486952","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28486952","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:913398","is_oa":false,"landing_page_url":"http://library.tue.nl/csp/dare/LinkToRepository.csp?recordnumber=913398","pdf_url":null,"source":{"id":"https://openalex.org/S4406923046","display_name":"TU/e Research Portal (Eindhoven University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN:1471-2105","raw_type":"Article / Letter to the editor"},{"id":"pmh:oai:aisberg.unibg.it:10446/85841","is_oa":true,"landing_page_url":"http://hdl.handle.net/10446/85841","pdf_url":null,"source":{"id":"https://openalex.org/S4377196347","display_name":"Aisberg (University of Bergamo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11039511","host_organization_name":"University of Bergamo","host_organization_lineage":["https://openalex.org/I11039511"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:boa.unimib.it:10281/152591","is_oa":true,"landing_page_url":"http://hdl.handle.net/10281/152591","pdf_url":null,"source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:78ec61bf2eb047e49e9f9ecf03a6d48c","is_oa":true,"landing_page_url":"https://doaj.org/article/78ec61bf2eb047e49e9f9ecf03a6d48c","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 18, Iss 1, Pp 1-18 (2017)","raw_type":"article"},{"id":"pmh:oai:library.tue.nl:913398","is_oa":false,"landing_page_url":"http://repository.tue.nl/913398","pdf_url":null,"source":{"id":"https://openalex.org/S4406923046","display_name":"TU/e Research Portal (Eindhoven University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN:1471-2105","raw_type":"Article / Letter to the editor"},{"id":"pmh:oai:pubmedcentral.nih.gov:5424297","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5424297","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1666-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1666-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1666-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.47999998927116394,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2613587040.pdf","grobid_xml":"https://content.openalex.org/works/W2613587040.grobid-xml"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W71003253","https://openalex.org/W168236614","https://openalex.org/W579519726","https://openalex.org/W836966646","https://openalex.org/W1504986959","https://openalex.org/W1543750907","https://openalex.org/W1563071114","https://openalex.org/W1663066714","https://openalex.org/W1812270431","https://openalex.org/W1965513001","https://openalex.org/W1974272479","https://openalex.org/W1976890616","https://openalex.org/W1977542511","https://openalex.org/W1979488710","https://openalex.org/W1985911638","https://openalex.org/W1989955731","https://openalex.org/W2003003919","https://openalex.org/W2003049033","https://openalex.org/W2004759358","https://openalex.org/W2034245914","https://openalex.org/W2040860090","https://openalex.org/W2042321087","https://openalex.org/W2049917443","https://openalex.org/W2051959027","https://openalex.org/W2053505534","https://openalex.org/W2063464435","https://openalex.org/W2071877138","https://openalex.org/W2072745964","https://openalex.org/W2080692289","https://openalex.org/W2093470850","https://openalex.org/W2096595244","https://openalex.org/W2097240335","https://openalex.org/W2098533238","https://openalex.org/W2102145367","https://openalex.org/W2102653059","https://openalex.org/W2107208446","https://openalex.org/W2115715889","https://openalex.org/W2132302738","https://openalex.org/W2138379775","https://openalex.org/W2139129111","https://openalex.org/W2144476439","https://openalex.org/W2149242848","https://openalex.org/W2155418451","https://openalex.org/W2161301127","https://openalex.org/W2163493106","https://openalex.org/W2165240751","https://openalex.org/W2165700291","https://openalex.org/W2167154952","https://openalex.org/W2167718560","https://openalex.org/W2170484057","https://openalex.org/W2466930524","https://openalex.org/W2482430271","https://openalex.org/W2490784103","https://openalex.org/W2764228816","https://openalex.org/W4285719527","https://openalex.org/W4290935769","https://openalex.org/W4300831640","https://openalex.org/W6630183236","https://openalex.org/W6773842061","https://openalex.org/W7067216465"],"related_works":["https://openalex.org/W2415545834","https://openalex.org/W2069695727","https://openalex.org/W2118505788","https://openalex.org/W4254166511","https://openalex.org/W2150084125","https://openalex.org/W1542823905","https://openalex.org/W1490878237","https://openalex.org/W2990314835","https://openalex.org/W2131319730","https://openalex.org/W2059850119"],"abstract_inverted_index":{"LASSIE":[0,28,71,92],"adopts":[1],"a":[2],"novel":[3],"fine-grained":[4],"parallelization":[5],"strategy":[6],"to":[7,17,31,36,48,51,66,74,89,96],"distribute":[8],"on":[9],"the":[10,14,19,40,83,106],"GPU":[11],"cores":[12],"all":[13],"calculations":[15],"required":[16],"solve":[18],"system":[20],"of":[21,25,60,78,86,108,114,117],"ODEs.":[22],"By":[23],"virtue":[24],"this":[26],"implementation,":[27],"achieves":[29],"up":[30],"92\u00d7":[32],"speed-up":[33],"with":[34],"respect":[35],"LSODA,":[37],"therefore":[38,94],"reducing":[39],"running":[41],"time":[42],"from":[43],"approximately":[44],"1":[45],"month":[46],"down":[47],"8":[49],"h":[50],"simulate":[52],"models":[53,116],"consisting":[54],"in,":[55],"for":[56,105],"instance,":[57],"four":[58],"thousands":[59],"reactions":[61],"and":[62,110],"species.":[63],"Notably,":[64],"thanks":[65],"its":[67],"smaller":[68],"memory":[69],"footprint,":[70],"is":[72,93],"able":[73],"perform":[75],"fast":[76],"simulations":[77],"even":[79],"larger":[80],"models,":[81],"whereby":[82],"tested":[84],"CPU-implementation":[85],"LSODA":[87],"failed":[88],"reach":[90],"termination.":[91],"expected":[95],"make":[97],"an":[98],"important":[99],"breakthrough":[100],"in":[101],"Systems":[102],"Biology":[103],"applications,":[104],"execution":[107],"faster":[109],"in-depth":[111],"computational":[112],"analyses":[113],"large-scale":[115],"complex":[118],"biological":[119],"systems.":[120]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
