{"id":"https://openalex.org/W2610433883","doi":"https://doi.org/10.1186/s12859-017-1664-2","title":"WebGIVI: a web-based gene enrichment analysis and visualization tool","display_name":"WebGIVI: a web-based gene enrichment analysis and visualization tool","publication_year":2017,"publication_date":"2017-05-04","ids":{"openalex":"https://openalex.org/W2610433883","doi":"https://doi.org/10.1186/s12859-017-1664-2","mag":"2610433883","pmid":"https://pubmed.ncbi.nlm.nih.gov/28472919"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1664-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1664-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-017-1664-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-017-1664-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101475441","display_name":"Liang Sun","orcid":"https://orcid.org/0000-0003-1634-4716"},"institutions":[{"id":"https://openalex.org/I4210126540","display_name":"Noble Research Institute","ror":"https://ror.org/02zta5505","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210126540"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liang Sun","raw_affiliation_strings":["Current address: Computing Service, The Samuel Roberts Noble Foundation, Ardmore, OK, 73401, USA","Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Current address: Computing Service, The Samuel Roberts Noble Foundation, Ardmore, OK, 73401, USA","institution_ids":["https://openalex.org/I4210126540"]},{"raw_affiliation_string":"Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113171251","display_name":"Yongnan Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I50760025","display_name":"Hangzhou Dianzi University","ror":"https://ror.org/0576gt767","country_code":"CN","type":"education","lineage":["https://openalex.org/I50760025"]},{"id":"https://openalex.org/I79272384","display_name":"University of Maryland, Baltimore County","ror":"https://ror.org/02qskvh78","country_code":"US","type":"education","lineage":["https://openalex.org/I79272384"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Yongnan Zhu","raw_affiliation_strings":["Department of Computer Science and Electrical Engineering, University of Maryland Baltimore County, 1000 Hilltop Circle, Baltimore, MD, USA","Department of Computer Science, Hangzhou Dianzi University, Hangzhou, 310018, Zhejiang Province, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Electrical Engineering, University of Maryland Baltimore County, 1000 Hilltop Circle, Baltimore, MD, USA","institution_ids":["https://openalex.org/I79272384"]},{"raw_affiliation_string":"Department of Computer Science, Hangzhou Dianzi University, Hangzhou, 310018, Zhejiang Province, People's Republic of China","institution_ids":["https://openalex.org/I50760025"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026536625","display_name":"A. S. M. Ashique Mahmood","orcid":"https://orcid.org/0000-0002-8196-9264"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. S. M. Ashique Mahmood","raw_affiliation_strings":["Department of Computer and Information Sciences, University of Delaware, Newark, DE, 19716, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, DE, 19716, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019996064","display_name":"Catalina O. Tudor","orcid":"https://orcid.org/0009-0002-0420-7589"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Catalina O. Tudor","raw_affiliation_strings":["Department of Computer and Information Sciences, University of Delaware, Newark, DE, 19716, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, DE, 19716, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020539776","display_name":"Jia Ren","orcid":null},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jia Ren","raw_affiliation_strings":["Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, 19711, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, 19711, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027009667","display_name":"K. Vijay\u2010Shanker","orcid":"https://orcid.org/0000-0003-0958-3073"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K. Vijay-Shanker","raw_affiliation_strings":["Department of Computer and Information Sciences, University of Delaware, Newark, DE, 19716, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, DE, 19716, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100326493","display_name":"Jian Chen","orcid":"https://orcid.org/0000-0003-3759-0254"},"institutions":[{"id":"https://openalex.org/I79272384","display_name":"University of Maryland, Baltimore County","ror":"https://ror.org/02qskvh78","country_code":"US","type":"education","lineage":["https://openalex.org/I79272384"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jian Chen","raw_affiliation_strings":["Department of Computer Science and Electrical Engineering, University of Maryland Baltimore County, 1000 Hilltop Circle, Baltimore, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Electrical Engineering, University of Maryland Baltimore County, 1000 Hilltop Circle, Baltimore, MD, USA","institution_ids":["https://openalex.org/I79272384"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004246605","display_name":"Carl J. Schmidt","orcid":"https://orcid.org/0000-0002-8386-4781"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Carl J. Schmidt","raw_affiliation_strings":["Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA. schmidtc@udel.edu","Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA. schmidtc@udel.edu","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5004246605"],"corresponding_institution_ids":["https://openalex.org/I86501945"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7852,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.70938532,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"18","issue":"1","first_page":"237","last_page":"237"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6463000178337097,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6463000178337097,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.3084999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.007400000002235174,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7272704243659973},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7005879878997803},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6657062768936157},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5032240748405457},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.5025684833526611},{"id":"https://openalex.org/keywords/gene-nomenclature","display_name":"Gene nomenclature","score":0.47463807463645935},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4590739905834198},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4455229341983795},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.4233849346637726},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.415712833404541},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3488565683364868},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3261919915676117},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.188174307346344},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11843717098236084},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.09673583507537842}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7272704243659973},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7005879878997803},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6657062768936157},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5032240748405457},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.5025684833526611},{"id":"https://openalex.org/C62177273","wikidata":"https://www.wikidata.org/wiki/Q5531556","display_name":"Gene nomenclature","level":4,"score":0.47463807463645935},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4590739905834198},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4455229341983795},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.4233849346637726},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.415712833404541},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3488565683364868},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3261919915676117},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.188174307346344},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11843717098236084},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.09673583507537842},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.0},{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-017-1664-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1664-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-017-1664-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28472919","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28472919","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:udspace.udel.edu:19716/21642","is_oa":true,"landing_page_url":"http://udspace.udel.edu/handle/19716/21642","pdf_url":null,"source":{"id":"https://openalex.org/S4377196565","display_name":"Library, Museums and Press - UDSpace (University of Delaware)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I86501945","host_organization_name":"University of Delaware","host_organization_lineage":["https://openalex.org/I86501945"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Genomics","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:92b723280a3f4d268688f528bf8c63d1","is_oa":true,"landing_page_url":"https://doaj.org/article/92b723280a3f4d268688f528bf8c63d1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 18, Iss 1, Pp 1-10 (2017)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5418709","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5418709","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1664-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1664-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-017-1664-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1607701488","display_name":null,"funder_award_id":"DBI-1260795","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2574429505","display_name":"ABI Development:   PathBubbles for Dynamic Visualization and Integration of Biological Information","funder_award_id":"1260795","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2832184943","display_name":"Collaborative Research:  ABI Development: PathBubbles for Dynamic Visualization and Integration of Biological Information","funder_award_id":"1147029","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8638643015","display_name":null,"funder_award_id":"NSF DBI-1260795","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337398","display_name":"Division of Biological Infrastructure","ror":"https://ror.org/04qn9mx93"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2610433883.pdf","grobid_xml":"https://content.openalex.org/works/W2610433883.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1490161904","https://openalex.org/W1903430549","https://openalex.org/W1971471239","https://openalex.org/W2028133290","https://openalex.org/W2038963685","https://openalex.org/W2040874922","https://openalex.org/W2075027317","https://openalex.org/W2096561521","https://openalex.org/W2109278577","https://openalex.org/W2111627817","https://openalex.org/W2124309259","https://openalex.org/W2130863229","https://openalex.org/W2133465414","https://openalex.org/W2135415614","https://openalex.org/W2137522673","https://openalex.org/W2145889895","https://openalex.org/W2149194035","https://openalex.org/W2158217645","https://openalex.org/W2159482845","https://openalex.org/W2159675211","https://openalex.org/W2164461702","https://openalex.org/W2179575365","https://openalex.org/W2546250138","https://openalex.org/W2739999456","https://openalex.org/W4241583463","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2461078469","https://openalex.org/W2944823289","https://openalex.org/W123790205","https://openalex.org/W2085515337","https://openalex.org/W3102852402","https://openalex.org/W3087706721","https://openalex.org/W2392118929","https://openalex.org/W2367815957","https://openalex.org/W2505408505","https://openalex.org/W2268687088"],"abstract_inverted_index":{"BACKGROUND:":[0],"A":[1],"major":[2],"challenge":[3],"of":[4,24,72,174,189,218,230],"high":[5],"throughput":[6],"transcriptome":[7],"studies":[8,26],"is":[9,48,77,132,226,246],"presenting":[10],"the":[11,22,42,60,64,136,150,208],"data":[12],"to":[13,40,49,94,113,116,134,148],"researchers":[14],"in":[15,203],"an":[16,86,183],"interpretable":[17],"format.":[18],"In":[19,166,212],"many":[20],"cases,":[21],"outputs":[23],"such":[25],"are":[27,31,57],"gene":[28,46,75,121,129,137,151,190,210],"lists":[29,71],"which":[30,199],"then":[32,119],"examined":[33],"for":[34,228],"enriched":[35],"biological":[36],"concepts.":[37],"One":[38],"approach":[39],"help":[41],"researcher":[43],"interpret":[44],"large":[45,70],"datasets":[47],"associate":[50],"genes":[51,115],"and":[52,74,103,109,118,122,139,172,185,191,197,220],"informative":[53],"terms":[54],"(iTerm)":[55],"that":[56,131,193,225],"obtained":[58],"from":[59],"biomedical":[61],"literature":[62],"using":[63,154],"eGIFT":[65],"text-mining":[66],"system.":[67],"However,":[68],"examining":[69],"iTerm":[73,123,141,152],"pairs":[76,153],"a":[78,128,158,162,222],"daunting":[79],"task.":[80],"RESULTS:":[81],"We":[82],"have":[83],"developed":[84],"WebGIVI,":[85],"interactive":[87,184],"web-based":[88],"visualization":[89,173],"tool":[90],"(":[91],"http://raven.anr.udel.edu/webgivi/":[92],")":[93],"explore":[95],"gene:iTerm":[96],"pairs.":[97,124],"WebGIVI":[98,125,168,181,214,244],"was":[99],"built":[100],"via":[101],"Cytoscape":[102,163],"Data":[104],"Driven":[105],"Document":[106],"JavaScript":[107],"libraries":[108],"can":[110,126,145,200,215,236],"be":[111,146,237],"used":[112,133],"relate":[114],"iTerms":[117,192],"visualize":[120,149,216],"accept":[127],"list":[130,144],"retrieve":[135],"symbols":[138],"corresponding":[140],"list.":[142],"This":[143],"submitted":[147],"two":[155],"distinct":[156],"methods:":[157],"Concept":[159],"Map":[160],"or":[161],"Network":[164],"Map.":[165],"addition,":[167,213],"also":[169],"supports":[170],"uploading":[171],"any":[175],"two-column":[176],"tab":[177],"separated":[178],"data.":[179],"CONCLUSIONS:":[180],"provides":[182],"integrated":[186],"network":[187],"graph":[188],"allows":[194],"filtering,":[195],"sorting,":[196],"grouping,":[198],"aid":[201],"biologists":[202],"developing":[204],"hypothesis":[205],"based":[206],"on":[207],"input":[209],"lists.":[211],"hundreds":[217],"nodes":[219],"generate":[221],"high-resolution":[223],"image":[224],"important":[227],"most":[229],"research":[231],"publications.":[232],"The":[233,243],"source":[234],"code":[235],"freely":[238],"downloaded":[239],"at":[240,248],"https://github.com/sunliang3361/WebGIVI":[241],".":[242,250],"tutorial":[245],"available":[247],"http://raven.anr.udel.edu/webgivi/tutorial.php":[249]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-06-22T08:00:12.763002","created_date":"2025-10-10T00:00:00"}