{"id":"https://openalex.org/W2621949084","doi":"https://doi.org/10.1186/s12859-017-1659-z","title":"ATria: a novel centrality algorithm applied to biological networks","display_name":"ATria: a novel centrality algorithm applied to biological networks","publication_year":2017,"publication_date":"2017-06-01","ids":{"openalex":"https://openalex.org/W2621949084","doi":"https://doi.org/10.1186/s12859-017-1659-z","mag":"2621949084","pmid":"https://pubmed.ncbi.nlm.nih.gov/28617231"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1659-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1659-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1659-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1659-z","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069453041","display_name":"Trevor Cickovski","orcid":"https://orcid.org/0000-0003-2724-6951"},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Trevor Cickovski","raw_affiliation_strings":["Bioinformatics Research Group (BioRG) & Biomolecular Sciences Institute, School of Computing & Information Sciences, Florida International University, 11200 SW 8th St, Miami, 33196, FL, USA. tcickovs@fiu.edu","Bioinformatics Research Group (BioRG) & Biomolecular Sciences Institute, School of Computing & Information Sciences, Florida International University, 11200 SW 8th St, Miami, 33196, FL, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Group (BioRG) & Biomolecular Sciences Institute, School of Computing & Information Sciences, Florida International University, 11200 SW 8th St, Miami, 33196, FL, USA. tcickovs@fiu.edu","institution_ids":[]},{"raw_affiliation_string":"Bioinformatics Research Group (BioRG) & Biomolecular Sciences Institute, School of Computing & Information Sciences, Florida International University, 11200 SW 8th St, Miami, 33196, FL, USA","institution_ids":["https://openalex.org/I19700959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042175630","display_name":"Eli Peake","orcid":null},"institutions":[{"id":"https://openalex.org/I88973175","display_name":"Eckerd College","ror":"https://ror.org/04d4qrf43","country_code":"US","type":"education","lineage":["https://openalex.org/I88973175"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eli Peake","raw_affiliation_strings":["Department of Computer Science, Eckerd College, 4200 54th Avenue South, Saint Petersburg, 33711, FL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Eckerd College, 4200 54th Avenue South, Saint Petersburg, 33711, FL, USA","institution_ids":["https://openalex.org/I88973175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053862694","display_name":"Vanessa Aguiar\u2010Pulido","orcid":"https://orcid.org/0000-0001-5248-6944"},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vanessa Aguiar-Pulido","raw_affiliation_strings":["Bioinformatics Research Group (BioRG) & Biomolecular Sciences Institute, School of Computing & Information Sciences, Florida International University, 11200 SW 8th St, Miami, 33196, FL, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Group (BioRG) & Biomolecular Sciences Institute, School of Computing & Information Sciences, Florida International University, 11200 SW 8th St, Miami, 33196, FL, USA","institution_ids":["https://openalex.org/I19700959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068890173","display_name":"Giri Narasimhan","orcid":"https://orcid.org/0000-0003-0535-4871"},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Giri Narasimhan","raw_affiliation_strings":["Bioinformatics Research Group (BioRG) & Biomolecular Sciences Institute, School of Computing & Information Sciences, Florida International University, 11200 SW 8th St, Miami, 33196, FL, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Group (BioRG) & Biomolecular Sciences Institute, School of Computing & Information Sciences, Florida International University, 11200 SW 8th St, Miami, 33196, FL, USA","institution_ids":["https://openalex.org/I19700959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5069453041"],"corresponding_institution_ids":["https://openalex.org/I19700959"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":4.4739,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.94659976,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"18","issue":"S8","first_page":"239","last_page":"239"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11252","display_name":"Evolutionary Game Theory and Cooperation","score":0.9847000241279602,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11252","display_name":"Evolutionary Game Theory and Cooperation","score":0.9847000241279602,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9121999740600586,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/centrality","display_name":"Centrality","score":0.9778764843940735},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7212848663330078},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5275951027870178},{"id":"https://openalex.org/keywords/network-theory","display_name":"Network theory","score":0.4783065617084503},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.47110775113105774},{"id":"https://openalex.org/keywords/network-science","display_name":"Network science","score":0.4543040692806244},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.44141244888305664},{"id":"https://openalex.org/keywords/social-network","display_name":"Social network (sociolinguistics)","score":0.42049339413642883},{"id":"https://openalex.org/keywords/complex-network","display_name":"Complex network","score":0.3792261779308319},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.337246835231781},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3306516408920288},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1707456409931183},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16146984696388245},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08353641629219055},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.06615865230560303}],"concepts":[{"id":"https://openalex.org/C53811970","wikidata":"https://www.wikidata.org/wiki/Q5062194","display_name":"Centrality","level":2,"score":0.9778764843940735},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7212848663330078},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5275951027870178},{"id":"https://openalex.org/C11804174","wikidata":"https://www.wikidata.org/wiki/Q1192971","display_name":"Network theory","level":2,"score":0.4783065617084503},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.47110775113105774},{"id":"https://openalex.org/C137753397","wikidata":"https://www.wikidata.org/wiki/Q2434424","display_name":"Network science","level":3,"score":0.4543040692806244},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.44141244888305664},{"id":"https://openalex.org/C4727928","wikidata":"https://www.wikidata.org/wiki/Q17164759","display_name":"Social network (sociolinguistics)","level":3,"score":0.42049339413642883},{"id":"https://openalex.org/C34947359","wikidata":"https://www.wikidata.org/wiki/Q665189","display_name":"Complex network","level":2,"score":0.3792261779308319},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.337246835231781},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3306516408920288},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1707456409931183},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16146984696388245},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08353641629219055},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.06615865230560303},{"id":"https://openalex.org/C518677369","wikidata":"https://www.wikidata.org/wiki/Q202833","display_name":"Social media","level":2,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018407","descriptor_name":"Bacterial Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018407","descriptor_name":"Bacterial Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018407","descriptor_name":"Bacterial Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-017-1659-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1659-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1659-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28617231","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28617231","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:digitalcommons.fiu.edu:all_faculty-1441","is_oa":true,"landing_page_url":"https://digitalcommons.fiu.edu/all_faculty/221","pdf_url":null,"source":{"id":"https://openalex.org/S4306401637","display_name":"Florida International University Digital Commons (Florida International University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I19700959","host_organization_name":"Florida International University","host_organization_lineage":["https://openalex.org/I19700959"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"All Faculty","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:b3a2029d56be40e9a84611946d813149","is_oa":true,"landing_page_url":"https://doaj.org/article/b3a2029d56be40e9a84611946d813149","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 18, Iss S8, Pp 1-10 (2017)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4323884","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC5471957","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5471957","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5471957","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1659-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1659-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1659-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2711389238","display_name":null,"funder_award_id":"FDOH 09KW-10","funder_id":"https://openalex.org/F4320309360","funder_display_name":"Florida Department of Health"}],"funders":[{"id":"https://openalex.org/F4320309360","display_name":"Florida Department of Health","ror":"https://ror.org/03e1xkn26"},{"id":"https://openalex.org/F4320309993","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2621949084.pdf","grobid_xml":"https://content.openalex.org/works/W2621949084.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W19838944","https://openalex.org/W50575035","https://openalex.org/W118100147","https://openalex.org/W379337736","https://openalex.org/W934261879","https://openalex.org/W1486817521","https://openalex.org/W1875112053","https://openalex.org/W1968595665","https://openalex.org/W1989921625","https://openalex.org/W1990103056","https://openalex.org/W1991154367","https://openalex.org/W2008620264","https://openalex.org/W2012139697","https://openalex.org/W2029205241","https://openalex.org/W2036120890","https://openalex.org/W2049779318","https://openalex.org/W2087194317","https://openalex.org/W2089973895","https://openalex.org/W2090018148","https://openalex.org/W2112090702","https://openalex.org/W2112513984","https://openalex.org/W2116773729","https://openalex.org/W2127347791","https://openalex.org/W2127957894","https://openalex.org/W2134784378","https://openalex.org/W2159675211","https://openalex.org/W2164253678","https://openalex.org/W2164412965","https://openalex.org/W2167482691","https://openalex.org/W2167504799","https://openalex.org/W2167637231","https://openalex.org/W2182773693","https://openalex.org/W2273054668","https://openalex.org/W2739999456","https://openalex.org/W3142588439","https://openalex.org/W3145128584","https://openalex.org/W4238452917","https://openalex.org/W4241876884","https://openalex.org/W4246219036"],"related_works":["https://openalex.org/W2322248538","https://openalex.org/W2342486111","https://openalex.org/W4241739558","https://openalex.org/W2611574733","https://openalex.org/W3037013787","https://openalex.org/W2024233712","https://openalex.org/W2046736422","https://openalex.org/W1848393892","https://openalex.org/W2626653991","https://openalex.org/W2135602072"],"abstract_inverted_index":{"We":[0],"show":[1],"evidence":[2],"that":[3],"ATria":[4],"identifies":[5],"three":[6],"different":[7,17],"kinds":[8],"of":[9],"\"important\"":[10],"nodes":[11],"in":[12,20],"microbial":[13],"social":[14],"networks":[15],"with":[16],"potential":[18],"roles":[19],"the":[21],"community.":[22]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
