{"id":"https://openalex.org/W2598349646","doi":"https://doi.org/10.1186/s12859-017-1598-8","title":"rNAV 2.0: a visualization tool for bacterial sRNA-mediated regulatory networks mining","display_name":"rNAV 2.0: a visualization tool for bacterial sRNA-mediated regulatory networks mining","publication_year":2017,"publication_date":"2017-03-23","ids":{"openalex":"https://openalex.org/W2598349646","doi":"https://doi.org/10.1186/s12859-017-1598-8","mag":"2598349646","pmid":"https://pubmed.ncbi.nlm.nih.gov/28335718"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1598-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1598-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1598-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1598-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073678051","display_name":"Romain Bourqui","orcid":"https://orcid.org/0000-0002-1847-2589"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210142254","display_name":"Laboratoire Bordelais de Recherche en Informatique","ror":"https://ror.org/03adqg323","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210159245","https://openalex.org/I4210160189"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Romain Bourqui","raw_affiliation_strings":["LaBRI, CNRS UMR5800, Universit\u00e9 de Bordeaux, 351, cours de la Lib\u00e9ration, Talence cedex, F-33405, France. bourqui@labri.fr","LaBRI, CNRS UMR5800, Universit\u00e9 de Bordeaux, 351, cours de la Lib\u00e9ration, Talence cedex, F-33405, France"],"raw_orcid":"https://orcid.org/0000-0002-1847-2589","affiliations":[{"raw_affiliation_string":"LaBRI, CNRS UMR5800, Universit\u00e9 de Bordeaux, 351, cours de la Lib\u00e9ration, Talence cedex, F-33405, France. bourqui@labri.fr","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254"]},{"raw_affiliation_string":"LaBRI, CNRS UMR5800, Universit\u00e9 de Bordeaux, 351, cours de la Lib\u00e9ration, Talence cedex, F-33405, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052609047","display_name":"Isabelle Dutour","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210142254","display_name":"Laboratoire Bordelais de Recherche en Informatique","ror":"https://ror.org/03adqg323","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210159245","https://openalex.org/I4210160189"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Isabelle Dutour","raw_affiliation_strings":["LaBRI, CNRS UMR5800, Universit\u00e9 de Bordeaux, 351, cours de la Lib\u00e9ration, Talence cedex, F-33405, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LaBRI, CNRS UMR5800, Universit\u00e9 de Bordeaux, 351, cours de la Lib\u00e9ration, Talence cedex, F-33405, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018524253","display_name":"Jonathan L. DuBois","orcid":"https://orcid.org/0000-0003-3154-4273"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210142254","display_name":"Laboratoire Bordelais de Recherche en Informatique","ror":"https://ror.org/03adqg323","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210159245","https://openalex.org/I4210160189"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jonathan Dubois","raw_affiliation_strings":["LaBRI, CNRS UMR5800, Universit\u00e9 de Bordeaux, 351, cours de la Lib\u00e9ration, Talence cedex, F-33405, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LaBRI, CNRS UMR5800, Universit\u00e9 de Bordeaux, 351, cours de la Lib\u00e9ration, Talence cedex, F-33405, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017806089","display_name":"William Benchimol","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210142254","display_name":"Laboratoire Bordelais de Recherche en Informatique","ror":"https://ror.org/03adqg323","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210159245","https://openalex.org/I4210160189"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"William Benchimol","raw_affiliation_strings":["LaBRI, CNRS UMR5800, Universit\u00e9 de Bordeaux, 351, cours de la Lib\u00e9ration, Talence cedex, F-33405, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LaBRI, CNRS UMR5800, Universit\u00e9 de Bordeaux, 351, cours de la Lib\u00e9ration, Talence cedex, F-33405, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032056143","display_name":"Patricia Th\u00e9bault","orcid":"https://orcid.org/0000-0003-2276-4573"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210142254","display_name":"Laboratoire Bordelais de Recherche en Informatique","ror":"https://ror.org/03adqg323","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210159245","https://openalex.org/I4210160189"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Patricia Th\u00e9bault","raw_affiliation_strings":["LaBRI, CNRS UMR5800, Universit\u00e9 de Bordeaux, 351, cours de la Lib\u00e9ration, Talence cedex, F-33405, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LaBRI, CNRS UMR5800, Universit\u00e9 de Bordeaux, 351, cours de la Lib\u00e9ration, Talence cedex, F-33405, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5073678051"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.8018,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.75582143,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"18","issue":"1","first_page":"188","last_page":"188"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9286999702453613,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9286999702453613,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.023499999195337296,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.007400000002235174,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6266156435012817},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5519956946372986},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.5302923321723938},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5286391377449036},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.46477892994880676},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4461452066898346},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4385620951652527},{"id":"https://openalex.org/keywords/transfer-rna","display_name":"Transfer RNA","score":0.428948312997818},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34732067584991455},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33677929639816284},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.27505820989608765},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24803763628005981},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.2294369339942932},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1649809181690216},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.10036072134971619}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6266156435012817},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5519956946372986},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.5302923321723938},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5286391377449036},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.46477892994880676},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4461452066898346},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4385620951652527},{"id":"https://openalex.org/C153957851","wikidata":"https://www.wikidata.org/wiki/Q201448","display_name":"Transfer RNA","level":4,"score":0.428948312997818},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34732067584991455},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33677929639816284},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.27505820989608765},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24803763628005981},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.2294369339942932},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1649809181690216},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.10036072134971619},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-017-1598-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1598-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1598-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28335718","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28335718","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5364647","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5364647","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-01521081v1","is_oa":false,"landing_page_url":"https://hal.science/hal-01521081","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2017, 18 (1), &#x27E8;10.1186/s12859-017-1598-8&#x27E9;","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1598-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1598-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1598-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.5400000214576721,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G367268585","display_name":"Exploration and Visualization of Dynamic Relational Data","funder_award_id":"ANR-10-JCJC-0201","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G619511658","display_name":"Initiative d\u2019excellence de l\u2019Universit\u00e9 de Bordeaux","funder_award_id":"ANR-10-IDEX-0003","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2598349646.pdf","grobid_xml":"https://content.openalex.org/works/W2598349646.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W649710528","https://openalex.org/W1822577623","https://openalex.org/W1916339519","https://openalex.org/W1970719212","https://openalex.org/W1987984332","https://openalex.org/W1989740486","https://openalex.org/W2029871578","https://openalex.org/W2038219941","https://openalex.org/W2042191361","https://openalex.org/W2043048525","https://openalex.org/W2044895510","https://openalex.org/W2045378165","https://openalex.org/W2046374424","https://openalex.org/W2057667458","https://openalex.org/W2062896692","https://openalex.org/W2070063001","https://openalex.org/W2086760680","https://openalex.org/W2089499735","https://openalex.org/W2091356219","https://openalex.org/W2097016050","https://openalex.org/W2101496908","https://openalex.org/W2108635043","https://openalex.org/W2118286668","https://openalex.org/W2119338907","https://openalex.org/W2119463761","https://openalex.org/W2121564430","https://openalex.org/W2124962378","https://openalex.org/W2132304324","https://openalex.org/W2142493242","https://openalex.org/W2144723744","https://openalex.org/W2147225758","https://openalex.org/W2149406594","https://openalex.org/W2149866996","https://openalex.org/W2150782426","https://openalex.org/W2150882562","https://openalex.org/W2156549753","https://openalex.org/W2159675211","https://openalex.org/W2163312119","https://openalex.org/W2169589032","https://openalex.org/W2170806980","https://openalex.org/W2171030481","https://openalex.org/W2511941815"],"related_works":["https://openalex.org/W2032233321","https://openalex.org/W2040216736","https://openalex.org/W3121970507","https://openalex.org/W2110028391","https://openalex.org/W54497855","https://openalex.org/W2068608913","https://openalex.org/W1998434095","https://openalex.org/W217960748","https://openalex.org/W3125814499","https://openalex.org/W2090827041"],"abstract_inverted_index":{"BACKGROUND:":[0],"Bacterial":[1],"sRNA-mediated":[2],"regulatory":[3,186],"networks":[4],"has":[5],"been":[6],"introduced":[7],"as":[8],"a":[9,19,172,194,232,240,248],"powerful":[10],"way":[11],"to":[12,23,37,129,134,143,147,191,223,259],"analyze":[13,224],"the":[14,48,53,59,66,73,98,109,136,149,200,203,215,225,260],"fast":[15],"rewiring":[16],"capabilities":[17],"of":[18,29,32,50,52,61,76,111,151,196,206,211,239,250,263],"bacteria":[20],"in":[21],"response":[22],"changing":[24],"environmental":[25],"conditions.":[26],"The":[27,244],"identification":[28],"mRNA":[30],"targets":[31,184],"bacterial":[33,182],"sRNAs":[34],"is":[35,189],"essential":[36],"investigate":[38],"their":[39],"functional":[40],"activities.":[41],"However,":[42,108],"this":[43,88,168],"step":[44],"remains":[45],"challenging":[46],"with":[47,65,87,193],"lack":[49],"knowledge":[51],"topological":[54],"and":[55,119,180,253,256],"biological":[56,132,197],"constraints":[57,218],"behind":[58],"formation":[60],"sRNA-mRNA":[62],"duplexes.":[63],"Even":[64],"most":[67],"sophisticated":[68],"bioinformatics":[69],"target":[70,91,113,137,226,267],"prediction":[71,153],"tools,":[72],"large":[74],"proportion":[75],"false":[77],"predictions":[78],"may":[79,115],"be":[80,94,116,121,144,220],"prohibitive":[81],"for":[82,159,178,185,229],"further":[83],"analyses.":[84],"To":[85,166],"deal":[86],"issue,":[89,169],"sRNA":[90,183,266],"analyses":[92],"can":[93,219],"carried":[95,145],"out":[96,146],"from":[97],"resulting":[99,112],"gene":[100,201],"lists":[101],"given":[102],"by":[103,124,231],"RNA-SEQ":[104],"experiments":[105],"when":[106],"available.":[107],"number":[110],"candidates":[114,158],"still":[117],"huge":[118],"cannot":[120],"easily":[122],"interpreted":[123],"domain":[125],"experts":[126],"who":[127],"need":[128],"confront":[130],"various":[131],"features":[133],"prioritize":[135],"candidates.":[138,268],"Therefore,":[139],"novel":[140],"strategies":[141],"have":[142],"improve":[148],"specificity":[150],"computational":[152],"results,":[154],"before":[155],"proposing":[156],"new":[157,173,261],"an":[160],"expensive":[161],"experimental":[162],"validation":[163],"stage.":[164],"RESULT:":[165],"address":[167],"we":[170],"propose":[171],"visualization":[174],"tool":[175],"rNAV":[176,188],"2.0,":[177],"detecting":[179],"filtering":[181],"networks.":[187],"designed":[190],"cope":[192],"variety":[195],"constraints,":[198],"including":[199],"annotations,":[202],"conserved":[204,234],"regions":[205],"interaction":[207,235,254],"or":[208,237],"specific":[209],"patterns":[210],"regulation.":[212],"Depending":[213],"on":[214],"application,":[216],"these":[217],"variously":[221],"combined":[222],"candidates,":[227],"prioritized":[228],"instance":[230],"known":[233,251],"region,":[236],"because":[238],"common":[241],"function.":[242],"CONCLUSION:":[243],"standalone":[245],"application":[246],"implements":[247],"set":[249],"algorithms":[252],"techniques,":[255],"applies":[257],"them":[258],"problem":[262],"identifying":[264],"reasonable":[265]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
