{"id":"https://openalex.org/W2597471102","doi":"https://doi.org/10.1186/s12859-017-1588-x","title":"LW-FQZip 2: a parallelized reference-based compression of FASTQ files","display_name":"LW-FQZip 2: a parallelized reference-based compression of FASTQ files","publication_year":2017,"publication_date":"2017-03-20","ids":{"openalex":"https://openalex.org/W2597471102","doi":"https://doi.org/10.1186/s12859-017-1588-x","mag":"2597471102","pmid":"https://pubmed.ncbi.nlm.nih.gov/28320326"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1588-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1588-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1588-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1588-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083469101","display_name":"Zhi-An Huang","orcid":"https://orcid.org/0000-0001-9974-148X"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhi-An Huang","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039966518","display_name":"Zhenkun Wen","orcid":"https://orcid.org/0000-0003-2124-9799"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenkun Wen","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046906876","display_name":"Qingjin Deng","orcid":null},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qingjin Deng","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032318952","display_name":"Ying Chu","orcid":"https://orcid.org/0000-0002-5905-3989"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Chu","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015217863","display_name":"Yiwen Sun","orcid":"https://orcid.org/0000-0003-0506-7899"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiwen Sun","raw_affiliation_strings":["School of Medicine, Shenzhen University, Shenzhen, 518060, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medicine, Shenzhen University, Shenzhen, 518060, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052762681","display_name":"Zexuan Zhu","orcid":"https://orcid.org/0000-0001-8479-6904"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zexuan Zhu","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China. zhuzx@szu.edu.cn","College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China. zhuzx@szu.edu.cn","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China","institution_ids":["https://openalex.org/I180726961"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5052762681"],"corresponding_institution_ids":["https://openalex.org/I180726961"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.9907,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.92956762,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"18","issue":"1","first_page":"179","last_page":"179"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.0017000000225380063,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.001500000013038516,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7566421031951904},{"id":"https://openalex.org/keywords/lossless-compression","display_name":"Lossless compression","score":0.5897731184959412},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.5434527397155762},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5302298665046692},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.5294408798217773},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.51558917760849},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.49616560339927673},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.49309012293815613},{"id":"https://openalex.org/keywords/bitwise-operation","display_name":"Bitwise operation","score":0.4476020038127899},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.443654328584671},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3849297761917114},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.24757415056228638},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14452892541885376},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1253441870212555},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.11903676390647888},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.11045053601264954},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08707785606384277}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7566421031951904},{"id":"https://openalex.org/C81081738","wikidata":"https://www.wikidata.org/wiki/Q55542","display_name":"Lossless compression","level":3,"score":0.5897731184959412},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.5434527397155762},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5302298665046692},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.5294408798217773},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.51558917760849},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.49616560339927673},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.49309012293815613},{"id":"https://openalex.org/C134765980","wikidata":"https://www.wikidata.org/wiki/Q879126","display_name":"Bitwise operation","level":2,"score":0.4476020038127899},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.443654328584671},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3849297761917114},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.24757415056228638},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14452892541885376},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1253441870212555},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.11903676390647888},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.11045053601264954},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08707785606384277},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-017-1588-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1588-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1588-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28320326","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28320326","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5359991","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5359991","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1588-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1588-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1588-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.6000000238418579}],"awards":[{"id":"https://openalex.org/G2185871310","display_name":null,"funder_award_id":"and 61572328","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3164240202","display_name":null,"funder_award_id":"61575125","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5448901618","display_name":"\u4fe1\u606f\u8d28\u5fc3\u7406\u8bba\u4e0e\u89c6\u9891\u7be1\u6539\u68c0\u6d4b\u6280\u672f\u7814\u7a76","funder_award_id":"61572328","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8413540691","display_name":"\u57fa\u4e8e\u9ad8\u901a\u91cfRNA-Seq\u548c\u591a\u76ee\u6807\u534f\u540c\u6f14\u5316\u6a21\u56e0\u8ba1\u7b97\u7684\u75be\u75c5\u6a21\u5757\u8bc6\u522b\u7814\u7a76","funder_award_id":"61471246","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8516188218","display_name":null,"funder_award_id":"61471246, 61575125, and 61572328","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2597471102.pdf","grobid_xml":"https://content.openalex.org/works/W2597471102.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1548134937","https://openalex.org/W1931027898","https://openalex.org/W1982703709","https://openalex.org/W1984783889","https://openalex.org/W2006088692","https://openalex.org/W2025583382","https://openalex.org/W2032198782","https://openalex.org/W2042947822","https://openalex.org/W2057791956","https://openalex.org/W2084821192","https://openalex.org/W2085522429","https://openalex.org/W2092880969","https://openalex.org/W2100076391","https://openalex.org/W2108234281","https://openalex.org/W2111044311","https://openalex.org/W2114792961","https://openalex.org/W2116041602","https://openalex.org/W2138196010","https://openalex.org/W2142434250","https://openalex.org/W2153707226","https://openalex.org/W2159084616","https://openalex.org/W2159683766","https://openalex.org/W2159906372","https://openalex.org/W2166588423","https://openalex.org/W2170727800","https://openalex.org/W2207690983","https://openalex.org/W2531091319","https://openalex.org/W2538355508"],"related_works":["https://openalex.org/W2948148442","https://openalex.org/W2461250372","https://openalex.org/W2394342941","https://openalex.org/W2169853506","https://openalex.org/W2547124190","https://openalex.org/W2350586049","https://openalex.org/W2385628723","https://openalex.org/W2057878850","https://openalex.org/W2169871401","https://openalex.org/W3008492011"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,26,142,164],"rapid":[2],"progress":[3],"of":[4,14,30,41,49,180],"high-throughput":[5,181],"DNA":[6,182],"sequencing":[7,43,66,140,183],"techniques":[8],"has":[9,45],"dramatically":[10],"reduced":[11],"the":[12,34,39,61],"costs":[13],"whole":[15],"genome":[16],"sequencing,":[17],"which":[18],"leads":[19],"to":[20,59,151,169],"revolutionary":[21],"advances":[22],"in":[23],"gene":[24],"industry.":[25],"explosively":[27],"increasing":[28],"volume":[29],"raw":[31],"data":[32,44,67,136],"outpaces":[33],"decreasing":[35],"disk":[36],"cost":[37],"and":[38,104,124,134,159,192],"storage":[40],"huge":[42],"become":[46],"a":[47,57,79,112,172],"bottleneck":[48],"downstream":[50],"analyses.":[51],"Data":[52],"compression":[53,68,82,154],"is":[54,93,109,129,149,187],"considered":[55],"as":[56,171],"solution":[58],"reduce":[60],"dependency":[62],"on":[63,131],"storage.":[64],"Efficient":[65],"methods":[69],"are":[70],"highly":[71],"demanded.":[72],"RESULTS:":[73],"In":[74],"this":[75],"article,":[76],"we":[77],"present":[78],"lossless":[80],"reference-based":[81],"method":[83],"namely":[84],"LW-FQZip":[85,91,96,107,127,147,167,185],"2":[86,92,108,128,148,168,186],"targeted":[87],"at":[88,156,190],"FASTQ":[89],"files.":[90],"improved":[94],"from":[95,138],"1":[97],"by":[98,118],"introducing":[99],"more":[100],"efficient":[101],"coding":[102],"scheme":[103],"parallelism.":[105,126],"Particularly,":[106],"equipped":[110],"with":[111],"light-weight":[113],"mapping":[114],"model,":[115,121],"bitwise":[116],"prediction":[117],"partial":[119],"matching":[120],"arithmetic":[122],"coding,":[123],"multi-threading":[125],"evaluated":[130],"both":[132],"short-read":[133],"long-read":[135],"generated":[137],"various":[139],"platforms.":[141],"experimental":[143],"results":[144],"show":[145],"that":[146],"able":[150],"obtain":[152],"promising":[153],"ratios":[155],"reasonable":[157],"time":[158],"memory":[160],"space":[161],"costs.":[162],"CONCLUSIONS:":[163],"competence":[165],"enables":[166],"serve":[170],"candidate":[173],"tool":[174],"for":[175],"archival":[176],"or":[177],"space-sensitive":[178],"applications":[179],"data.":[184],"freely":[188],"available":[189],"http://csse.szu.edu.cn/staff/zhuzx/LWFQZip2":[191],"https://github.com/Zhuzxlab/LW-FQZip2":[193],".":[194]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":1}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}
