{"id":"https://openalex.org/W2596977934","doi":"https://doi.org/10.1186/s12859-017-1583-2","title":"microclass: an R-package for 16S taxonomy classification","display_name":"microclass: an R-package for 16S taxonomy classification","publication_year":2017,"publication_date":"2017-03-16","ids":{"openalex":"https://openalex.org/W2596977934","doi":"https://doi.org/10.1186/s12859-017-1583-2","mag":"2596977934","pmid":"https://pubmed.ncbi.nlm.nih.gov/28302051"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1583-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1583-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1583-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1583-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000501516","display_name":"Kristian Hovde Liland","orcid":"https://orcid.org/0000-0001-6468-9423"},"institutions":[{"id":"https://openalex.org/I4210121781","display_name":"Nofima","ror":"https://ror.org/02v1rsx93","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210121781"]},{"id":"https://openalex.org/I54108979","display_name":"Norwegian University of Life Sciences","ror":"https://ror.org/04a1mvv97","country_code":"NO","type":"education","lineage":["https://openalex.org/I54108979"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Kristian Hovde Liland","raw_affiliation_strings":["Department of Chemistry, Biotechnology and Food Sciences, Norwegian University of Life Sciences, \u00c5s, P.O. Box 5003, N-1432, Norway","Nofima - Norwegian Institute of Food, Fisheries and Aquaculture Research, Osloveien 1, \u00c5s, N-1430, Norway","Department of Chemistry, Biotechnology and Food Sciences, Norwegian University of Life Sciences, \u00c5s, Norway","Nofima - Norwegian Institute of Food, Fisheries and Aquaculture Research, \u00c5s, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Biotechnology and Food Sciences, Norwegian University of Life Sciences, \u00c5s, P.O. Box 5003, N-1432, Norway","institution_ids":["https://openalex.org/I54108979"]},{"raw_affiliation_string":"Nofima - Norwegian Institute of Food, Fisheries and Aquaculture Research, Osloveien 1, \u00c5s, N-1430, Norway","institution_ids":["https://openalex.org/I4210121781"]},{"raw_affiliation_string":"Department of Chemistry, Biotechnology and Food Sciences, Norwegian University of Life Sciences, \u00c5s, Norway","institution_ids":["https://openalex.org/I54108979"]},{"raw_affiliation_string":"Nofima - Norwegian Institute of Food, Fisheries and Aquaculture Research, \u00c5s, Norway","institution_ids":["https://openalex.org/I4210121781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069542787","display_name":"Hilde Vinje","orcid":"https://orcid.org/0000-0003-0318-0214"},"institutions":[{"id":"https://openalex.org/I54108979","display_name":"Norwegian University of Life Sciences","ror":"https://ror.org/04a1mvv97","country_code":"NO","type":"education","lineage":["https://openalex.org/I54108979"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Hilde Vinje","raw_affiliation_strings":["Department of Chemistry, Biotechnology and Food Sciences, Norwegian University of Life Sciences, \u00c5s, P.O. Box 5003, N-1432, Norway","Department of Chemistry, Biotechnology and Food Sciences, Norwegian University of Life Sciences, \u00c5s, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Biotechnology and Food Sciences, Norwegian University of Life Sciences, \u00c5s, P.O. Box 5003, N-1432, Norway","institution_ids":["https://openalex.org/I54108979"]},{"raw_affiliation_string":"Department of Chemistry, Biotechnology and Food Sciences, Norwegian University of Life Sciences, \u00c5s, Norway","institution_ids":["https://openalex.org/I54108979"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072350800","display_name":"Lars Snipen","orcid":"https://orcid.org/0000-0002-2883-861X"},"institutions":[{"id":"https://openalex.org/I54108979","display_name":"Norwegian University of Life Sciences","ror":"https://ror.org/04a1mvv97","country_code":"NO","type":"education","lineage":["https://openalex.org/I54108979"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Lars Snipen","raw_affiliation_strings":["Department of Chemistry, Biotechnology and Food Sciences, Norwegian University of Life Sciences, \u00c5s, P.O. Box 5003, N-1432, Norway. lars.snipen@nmbu.no","Department of Chemistry, Biotechnology and Food Sciences, Norwegian University of Life Sciences, \u00c5s, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Biotechnology and Food Sciences, Norwegian University of Life Sciences, \u00c5s, P.O. Box 5003, N-1432, Norway. lars.snipen@nmbu.no","institution_ids":["https://openalex.org/I54108979"]},{"raw_affiliation_string":"Department of Chemistry, Biotechnology and Food Sciences, Norwegian University of Life Sciences, \u00c5s, Norway","institution_ids":["https://openalex.org/I54108979"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5072350800"],"corresponding_institution_ids":["https://openalex.org/I54108979"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.4552,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.81422427,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"18","issue":"1","first_page":"172","last_page":"172"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7058866024017334},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5748968720436096},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.5464833378791809},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5214497447013855},{"id":"https://openalex.org/keywords/biological-classification","display_name":"Biological classification","score":0.47014644742012024},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.43482428789138794},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.43278267979621887},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33471664786338806},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1756783425807953},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.06803256273269653}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7058866024017334},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5748968720436096},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.5464833378791809},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5214497447013855},{"id":"https://openalex.org/C48702757","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Biological classification","level":2,"score":0.47014644742012024},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.43482428789138794},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.43278267979621887},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33471664786338806},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1756783425807953},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.06803256273269653},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-017-1583-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1583-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1583-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28302051","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28302051","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:brage.bibsys.no:11250/2485297","is_oa":false,"landing_page_url":"http://hdl.handle.net/11250/2485297","pdf_url":null,"source":{"id":"https://openalex.org/S4306400255","display_name":"BIBSYS Brage (BIBSYS (Norway))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173212132","host_organization_name":"Vilnius University","host_organization_lineage":["https://openalex.org/I173212132"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"18","raw_type":"Peer reviewed"},{"id":"pmh:oai:brage.bibsys.no:11250/2502930","is_oa":false,"landing_page_url":"http://hdl.handle.net/11250/2502930","pdf_url":null,"source":{"id":"https://openalex.org/S4306400255","display_name":"BIBSYS Brage (BIBSYS (Norway))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173212132","host_organization_name":"Vilnius University","host_organization_lineage":["https://openalex.org/I173212132"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"18","raw_type":"Journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5353803","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5353803","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1583-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1583-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1583-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320324888","display_name":"Norges Milj\u00f8- og Biovitenskapelige Universitet","ror":"https://ror.org/04a1mvv97"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2596977934.pdf","grobid_xml":"https://content.openalex.org/works/W2596977934.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W255381846","https://openalex.org/W350234834","https://openalex.org/W1985623566","https://openalex.org/W2045073446","https://openalex.org/W2072970694","https://openalex.org/W2088833470","https://openalex.org/W2105368763","https://openalex.org/W2122555405","https://openalex.org/W2152885278","https://openalex.org/W2156619206","https://openalex.org/W2159325249","https://openalex.org/W2320751437"],"related_works":["https://openalex.org/W1977424337","https://openalex.org/W4280549543","https://openalex.org/W2338074085","https://openalex.org/W2031132219","https://openalex.org/W2736560180","https://openalex.org/W2045788357","https://openalex.org/W2342521350","https://openalex.org/W4297828714","https://openalex.org/W2011185749","https://openalex.org/W4387094765"],"abstract_inverted_index":{"Based":[0],"on":[1],"input":[2],"sequences":[3,28],"of":[4],"varying":[5],"length":[6],"and":[7],"quality,":[8],"we":[9],"demonstrate":[10],"how":[11],"the":[12,15,30,40],"output":[13],"from":[14,26],"classifications":[16],"can":[17],"be":[18],"used":[19],"to":[20],"obtain":[21],"high":[22],"quality":[23],"taxonomic":[24],"assignments":[25],"16S":[27],"within":[29],"R":[31,42],"computing":[32],"environment.":[33],"The":[34],"package":[35],"is":[36],"publicly":[37],"available":[38],"at":[39],"Comprehensive":[41],"Archive":[43],"Network.":[44]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}