{"id":"https://openalex.org/W2591941343","doi":"https://doi.org/10.1186/s12859-017-1571-6","title":"Avoiding the pitfalls of gene set enrichment analysis with SetRank","display_name":"Avoiding the pitfalls of gene set enrichment analysis with SetRank","publication_year":2017,"publication_date":"2017-03-03","ids":{"openalex":"https://openalex.org/W2591941343","doi":"https://doi.org/10.1186/s12859-017-1571-6","mag":"2591941343","pmid":"https://pubmed.ncbi.nlm.nih.gov/28259142"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1571-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1571-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1571-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1571-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004120907","display_name":"C\u00e9dric Simillion","orcid":"https://orcid.org/0000-0002-2026-6741"},"institutions":[{"id":"https://openalex.org/I118564535","display_name":"University of Bern","ror":"https://ror.org/02k7v4d05","country_code":"CH","type":"education","lineage":["https://openalex.org/I118564535"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I335988729","display_name":"Universidad Iberoamericana","ror":"https://ror.org/004xzjm20","country_code":"DO","type":"education","lineage":["https://openalex.org/I335988729"]}],"countries":["CH","DO"],"is_corresponding":true,"raw_author_name":"Cedric Simillion","raw_affiliation_strings":["Department of Clinical Research, University of Bern, Murtenstrasse 35, 3008, Berne, Switzerland. cedric.simillion@dkf.unibe.ch","Interfaculty Bioinformatics Unit and SIB Swiss Institute of Bioinformatics, University of Bern, Baltzerstrasse 6, 3012, Berne, Switzerland. cedric.simillion@dkf.unibe.ch","Interfaculty Bioinformatics Unit and SIB Swiss Institute of Bioinformatics, University of Bern, Berne, Switzerland","Department of Clinical Research, University of Bern, Berne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Clinical Research, University of Bern, Murtenstrasse 35, 3008, Berne, Switzerland. cedric.simillion@dkf.unibe.ch","institution_ids":["https://openalex.org/I118564535","https://openalex.org/I335988729"]},{"raw_affiliation_string":"Interfaculty Bioinformatics Unit and SIB Swiss Institute of Bioinformatics, University of Bern, Baltzerstrasse 6, 3012, Berne, Switzerland. cedric.simillion@dkf.unibe.ch","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Interfaculty Bioinformatics Unit and SIB Swiss Institute of Bioinformatics, University of Bern, Berne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I118564535"]},{"raw_affiliation_string":"Department of Clinical Research, University of Bern, Berne, Switzerland","institution_ids":["https://openalex.org/I118564535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066081150","display_name":"Robin Liechti","orcid":"https://orcid.org/0000-0001-8351-4776"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Robin Liechti","raw_affiliation_strings":["Vital-IT, SIB Swiss Institute of Bioinformatics, Quartier Sorge - Batiment Genopode, 1015, Lausanne, Switzerland","Vital-IT, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Vital-IT, SIB Swiss Institute of Bioinformatics, Quartier Sorge - Batiment Genopode, 1015, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Vital-IT, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078137898","display_name":"Heidi E. L. Lischer","orcid":"https://orcid.org/0000-0002-9616-2092"},"institutions":[{"id":"https://openalex.org/I118564535","display_name":"University of Bern","ror":"https://ror.org/02k7v4d05","country_code":"CH","type":"education","lineage":["https://openalex.org/I118564535"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I200744771","display_name":"ZHAW Zurich University of Applied Sciences","ror":null,"country_code":"CH","type":null,"lineage":["https://openalex.org/I200744771"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I4210135169","display_name":"Institut de Biologia Evolutiva","ror":"https://ror.org/044mj7r89","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I170486558","https://openalex.org/I4210135169"]}],"countries":["CH","ES"],"is_corresponding":false,"raw_author_name":"Heidi E.L. Lischer","raw_affiliation_strings":["Interfaculty Bioinformatics Unit and SIB Swiss Institute of Bioinformatics, University of Bern, Baltzerstrasse 6, 3012, Berne, Switzerland","Present Address: URPP Evolution in Action; Institute of Evolutionary Biology and Environmental Studies (IEU), University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland","Present Address: URPP Evolution in Action","Interfaculty Bioinformatics Unit and SIB Swiss Institute of Bioinformatics, University of Bern, Berne, Switzerland","Institute of Evolutionary Biology and Environmental Studies (IEU), University of Zurich, Zurich, Switzerland"],"affiliations":[{"raw_affiliation_string":"Interfaculty Bioinformatics Unit and SIB Swiss Institute of Bioinformatics, University of Bern, Baltzerstrasse 6, 3012, Berne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I118564535"]},{"raw_affiliation_string":"Present Address: URPP Evolution in Action; Institute of Evolutionary Biology and Environmental Studies (IEU), University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland","institution_ids":["https://openalex.org/I4210135169","https://openalex.org/I200744771"]},{"raw_affiliation_string":"Present Address: URPP Evolution in Action","institution_ids":[]},{"raw_affiliation_string":"Interfaculty Bioinformatics Unit and SIB Swiss Institute of Bioinformatics, University of Bern, Berne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I118564535"]},{"raw_affiliation_string":"Institute of Evolutionary Biology and Environmental Studies (IEU), University of Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I202697423"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063271595","display_name":"Vassilios Ioannidis","orcid":"https://orcid.org/0000-0002-4209-2578"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Vassilios Ioannidis","raw_affiliation_strings":["SIB Technology, SIB Swiss Institute of Bioinformatics, Quartier Sorge - Batiment Genopode, 1015, Lausanne, Switzerland","Vital-IT, SIB Swiss Institute of Bioinformatics, Quartier Sorge - Batiment Genopode, 1015, Lausanne, Switzerland","SIB Technology, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","Vital-IT, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"SIB Technology, SIB Swiss Institute of Bioinformatics, Quartier Sorge - Batiment Genopode, 1015, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Vital-IT, SIB Swiss Institute of Bioinformatics, Quartier Sorge - Batiment Genopode, 1015, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"SIB Technology, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Vital-IT, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":null,"display_name":"R\u00e9my Bruggmann","orcid":"https://orcid.org/0000-0003-4733-7922"},"institutions":[{"id":"https://openalex.org/I118564535","display_name":"University of Bern","ror":"https://ror.org/02k7v4d05","country_code":"CH","type":"education","lineage":["https://openalex.org/I118564535"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"R\u00e9my Bruggmann","raw_affiliation_strings":["Interfaculty Bioinformatics Unit and SIB Swiss Institute of Bioinformatics, University of Bern, Baltzerstrasse 6, 3012, Berne, Switzerland. remy.bruggmann@bioinformatics.unibe.ch","Interfaculty Bioinformatics Unit and SIB Swiss Institute of Bioinformatics, University of Bern, Berne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Interfaculty Bioinformatics Unit and SIB Swiss Institute of Bioinformatics, University of Bern, Baltzerstrasse 6, 3012, Berne, Switzerland. remy.bruggmann@bioinformatics.unibe.ch","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Interfaculty Bioinformatics Unit and SIB Swiss Institute of Bioinformatics, University of Bern, Berne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I118564535"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5004120907"],"corresponding_institution_ids":["https://openalex.org/I118564535","https://openalex.org/I12708293","https://openalex.org/I335988729"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":4.8278,"has_fulltext":true,"cited_by_count":136,"citation_normalized_percentile":{"value":0.95993029,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"18","issue":"1","first_page":"151","last_page":"151"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6282885074615479},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.6030126214027405},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5587984323501587},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4952787458896637},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.46851444244384766},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.45447051525115967},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4076654314994812},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.22786742448806763},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1420622169971466}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6282885074615479},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6030126214027405},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5587984323501587},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4952787458896637},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.46851444244384766},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.45447051525115967},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4076654314994812},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.22786742448806763},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1420622169971466}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-017-1571-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1571-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1571-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28259142","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28259142","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:serval.unil.ch:BIB_AD1953959961","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_AD1953959961","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics, vol. 18, no. 1, pp. 151","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:iris.unil.ch:iris/221516","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/221516","pdf_url":"https://iris.unil.ch/bitstreams/f2ebd129-d7ad-4130-aeaa-dbc510c6b488/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:boris.unibe.ch:98173","is_oa":true,"landing_page_url":"https://boris.unibe.ch/98173/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401086","display_name":"Bern Open Repository and Information System (University of Bern)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I118564535","host_organization_name":"University of Bern","host_organization_lineage":["https://openalex.org/I118564535"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Simillion, Cedric Andr\u00e9 Marie; Liechti, Robin; Lischer, Heidi E.L.; Ioannidis, Vassilios; Bruggmann, R\u00e9my (2017). Avoiding the pitfalls of gene set enrichment analysis with SetRank. BMC bioinformatics, 18(1), p. 151. BioMed Central 10.1186/s12859-017-1571-6 <http://dx.doi.org/10.1186/s12859-017-1571-6>","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5336655","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5336655","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1571-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1571-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1571-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1639298667","display_name":null,"funder_award_id":"NA","funder_id":"https://openalex.org/F4320310992","funder_display_name":"University of Bern"}],"funders":[{"id":"https://openalex.org/F4320310992","display_name":"University of Bern","ror":"https://ror.org/02k7v4d05"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2591941343.pdf","grobid_xml":"https://content.openalex.org/works/W2591941343.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1981093360","https://openalex.org/W1981612867","https://openalex.org/W1989277387","https://openalex.org/W1992045522","https://openalex.org/W1999530403","https://openalex.org/W2034613288","https://openalex.org/W2038963685","https://openalex.org/W2040676413","https://openalex.org/W2060880575","https://openalex.org/W2060987350","https://openalex.org/W2065040824","https://openalex.org/W2066636486","https://openalex.org/W2084533385","https://openalex.org/W2094108329","https://openalex.org/W2096173332","https://openalex.org/W2103017472","https://openalex.org/W2105022693","https://openalex.org/W2112220625","https://openalex.org/W2118069309","https://openalex.org/W2118258530","https://openalex.org/W2120024428","https://openalex.org/W2121044470","https://openalex.org/W2123879591","https://openalex.org/W2129099812","https://openalex.org/W2130410032","https://openalex.org/W2131848047","https://openalex.org/W2131885889","https://openalex.org/W2132352688","https://openalex.org/W2135827569","https://openalex.org/W2135891958","https://openalex.org/W2138255346","https://openalex.org/W2139036189","https://openalex.org/W2155142785","https://openalex.org/W2155331065","https://openalex.org/W2158384363","https://openalex.org/W2159707944","https://openalex.org/W2167119716","https://openalex.org/W2170989872","https://openalex.org/W2171030481","https://openalex.org/W4237335579"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2415545834","https://openalex.org/W2069695727","https://openalex.org/W2150084125","https://openalex.org/W2118505788","https://openalex.org/W1802639773","https://openalex.org/W1972196578","https://openalex.org/W1490878237","https://openalex.org/W1542823905","https://openalex.org/W2034625591"],"abstract_inverted_index":{"The":[0],"benchmarking":[1],"results":[2,20],"show":[3,15],"that":[4,16],"SetRank":[5,31],"is":[6,32],"a":[7],"highly":[8],"specific":[9],"tool":[10],"for":[11],"GSEA.":[12],"Furthermore,":[13],"we":[14],"the":[17],"reliability":[18],"of":[19],"can":[21],"be":[22],"improved":[23],"by":[24],"taking":[25],"sample":[26],"source":[27],"bias":[28],"into":[29],"account.":[30],"available":[33],"as":[34],"an":[35,40],"R":[36],"package":[37],"and":[38],"through":[39],"online":[41],"web":[42],"interface.":[43]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":23},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":17},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":16},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":7}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}