{"id":"https://openalex.org/W2583689827","doi":"https://doi.org/10.1186/s12859-017-1502-6","title":"Transductive learning as an alternative to translation initiation site identification","display_name":"Transductive learning as an alternative to translation initiation site identification","publication_year":2017,"publication_date":"2017-02-02","ids":{"openalex":"https://openalex.org/W2583689827","doi":"https://doi.org/10.1186/s12859-017-1502-6","mag":"2583689827","pmid":"https://pubmed.ncbi.nlm.nih.gov/28152994"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1502-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1502-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1502-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1502-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068189150","display_name":"Cristiano L. N. Pinto","orcid":"https://orcid.org/0000-0003-3066-4927"},"institutions":[{"id":"https://openalex.org/I4210121092","display_name":"Brazilian National Association of Graduate Programs in Communication","ror":"https://ror.org/03nn1bn76","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210121092"]},{"id":"https://openalex.org/I96294087","display_name":"Companhia Energ\u00e9tica de Minas Gerais (Brazil)","ror":"https://ror.org/02kbrsj34","country_code":"BR","type":"company","lineage":["https://openalex.org/I96294087"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Cristiano Lacerda Nunes Pinto","raw_affiliation_strings":["School of Engeneering of Minas Gerais - EMGE, Belo Horizonte, 30150-250, Brazil. cristiano.lacerda@gmail.com","School of Engeneering of Minas Gerais - EMGE, Belo Horizonte, 30150-250, Brazil"],"affiliations":[{"raw_affiliation_string":"School of Engeneering of Minas Gerais - EMGE, Belo Horizonte, 30150-250, Brazil. cristiano.lacerda@gmail.com","institution_ids":["https://openalex.org/I4210121092"]},{"raw_affiliation_string":"School of Engeneering of Minas Gerais - EMGE, Belo Horizonte, 30150-250, Brazil","institution_ids":["https://openalex.org/I96294087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048437524","display_name":"Cristiane Neri Nobre","orcid":"https://orcid.org/0000-0001-8517-9852"},"institutions":[{"id":"https://openalex.org/I170935008","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica de Minas Gerais","ror":"https://ror.org/03j1rr444","country_code":"BR","type":"education","lineage":["https://openalex.org/I170935008"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Cristiane Neri Nobre","raw_affiliation_strings":["Pontifical Catholic University of Minas Gerais - PUC-MG, 255, Walter Ianni Street, Belo Horizonte, 31980-110, Brazil"],"affiliations":[{"raw_affiliation_string":"Pontifical Catholic University of Minas Gerais - PUC-MG, 255, Walter Ianni Street, Belo Horizonte, 31980-110, Brazil","institution_ids":["https://openalex.org/I170935008"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056686523","display_name":"Luis E. Z\u00e1rate","orcid":"https://orcid.org/0000-0001-7063-1658"},"institutions":[{"id":"https://openalex.org/I170935008","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica de Minas Gerais","ror":"https://ror.org/03j1rr444","country_code":"BR","type":"education","lineage":["https://openalex.org/I170935008"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Luis Enrique Z\u00e1rate","raw_affiliation_strings":["Pontifical Catholic University of Minas Gerais - PUC-MG, 255, Walter Ianni Street, Belo Horizonte, 31980-110, Brazil"],"affiliations":[{"raw_affiliation_string":"Pontifical Catholic University of Minas Gerais - PUC-MG, 255, Walter Ianni Street, Belo Horizonte, 31980-110, Brazil","institution_ids":["https://openalex.org/I170935008"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5068189150"],"corresponding_institution_ids":["https://openalex.org/I4210121092","https://openalex.org/I96294087"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.3368,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.58819394,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"18","issue":"1","first_page":"81","last_page":"81"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7868233323097229},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.741661012172699},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.7282612919807434},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7102469205856323},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6551757454872131},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.5524592995643616},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.49678948521614075},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3319721817970276},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1999070942401886},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11845117807388306},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.09530282020568848},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07807552814483643}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7868233323097229},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.741661012172699},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.7282612919807434},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7102469205856323},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6551757454872131},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.5524592995643616},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.49678948521614075},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3319721817970276},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1999070942401886},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11845117807388306},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.09530282020568848},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07807552814483643},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010442","descriptor_name":"Peptide Chain Initiation, Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010442","descriptor_name":"Peptide Chain Initiation, Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010442","descriptor_name":"Peptide Chain Initiation, Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-017-1502-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1502-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1502-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28152994","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28152994","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5290616","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5290616","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1502-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1502-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1502-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G120275728","display_name":null,"funder_award_id":"Univer","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G1429890386","display_name":null,"funder_award_id":"(CNPq","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3601516360","display_name":null,"funder_award_id":"Brazil","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G5079005330","display_name":null,"funder_award_id":"support","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"}],"funders":[{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320322980","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de Minas Gerais","ror":"https://ror.org/00nc55f03"},{"id":"https://openalex.org/F4320322987","display_name":"Universidade Federal do Rio Grande do Sul","ror":"https://ror.org/041yk2d64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2583689827.pdf","grobid_xml":"https://content.openalex.org/works/W2583689827.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1479807131","https://openalex.org/W1940988901","https://openalex.org/W1981371363","https://openalex.org/W1987148148","https://openalex.org/W2007959190","https://openalex.org/W2009105413","https://openalex.org/W2021385006","https://openalex.org/W2058426472","https://openalex.org/W2058962978","https://openalex.org/W2080052447","https://openalex.org/W2080347313","https://openalex.org/W2095595785","https://openalex.org/W2097409962","https://openalex.org/W2105712140","https://openalex.org/W2114281975","https://openalex.org/W2119821739","https://openalex.org/W2132028676","https://openalex.org/W2132115288","https://openalex.org/W2145991872","https://openalex.org/W2147376178","https://openalex.org/W2148143831","https://openalex.org/W2153635508","https://openalex.org/W2165270659","https://openalex.org/W2964057329"],"related_works":["https://openalex.org/W4205958290","https://openalex.org/W3194539120","https://openalex.org/W2937631562","https://openalex.org/W4361795583","https://openalex.org/W3136979370","https://openalex.org/W2101819884","https://openalex.org/W3195168932","https://openalex.org/W1996541855","https://openalex.org/W2979979539","https://openalex.org/W2803710604"],"abstract_inverted_index":{"In":[0],"relation":[1],"to":[2,36],"precision,":[3],"the":[4,9,15,19,41,50,59],"results":[5,16],"are":[6],"similar":[7],"for":[8,28,40,47],"ISVM":[10],"and":[11,30],"TSVM":[12,22],"classifiers.":[13],"However,":[14],"show":[17],"that":[18],"application":[20,42],"of":[21,43],"approach":[23],"ensured":[24],"an":[25],"improvement,":[26],"specially":[27],"F-measure":[29],"sensitivity.":[31],"Moreover,":[32],"it":[33],"was":[34],"possible":[35],"identify":[37],"a":[38],"potential":[39],"TSVM,":[44],"which":[45],"is":[46],"organisms":[48],"in":[49,58],"initial":[51],"study":[52],"phase":[53],"with":[54],"few":[55],"identified":[56],"sequences":[57],"databases.":[60]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2017-02-10T00:00:00"}
