{"id":"https://openalex.org/W2590817183","doi":"https://doi.org/10.1186/s12859-017-1494-2","title":"ATGC transcriptomics: a web-based application to integrate, explore and analyze de novo transcriptomic data","display_name":"ATGC transcriptomics: a web-based application to integrate, explore and analyze de novo transcriptomic data","publication_year":2017,"publication_date":"2017-02-21","ids":{"openalex":"https://openalex.org/W2590817183","doi":"https://doi.org/10.1186/s12859-017-1494-2","mag":"2590817183","pmid":"https://pubmed.ncbi.nlm.nih.gov/28222698"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1494-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1494-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1494-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1494-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060347222","display_name":"Sergio Gonz\u00e1lez","orcid":"https://orcid.org/0000-0002-5233-5529"},"institutions":[{"id":"https://openalex.org/I4210153948","display_name":"National Agricultural Technology Institute","ror":"https://ror.org/04wm52x94","country_code":"AR","type":"funder","lineage":["https://openalex.org/I4210153948"]}],"countries":["AR"],"is_corresponding":true,"raw_author_name":"Sergio Gonzalez","raw_affiliation_strings":["Instituto de Biotecnolog\u00eda, Centro Investigaci\u00f3n en Ciencias Veterinarias y Agron\u00f3micas (CICVyA) INTA, Hurlingham, Buenos Aires, Argentina. gonzalez.sergio@inta.gob.ar","Instituto de Biotecnolog\u00eda, Centro Investigaci\u00f3n en Ciencias Veterinarias y Agron\u00f3micas (CICVyA) INTA, Hurlingham, Argentina"],"affiliations":[{"raw_affiliation_string":"Instituto de Biotecnolog\u00eda, Centro Investigaci\u00f3n en Ciencias Veterinarias y Agron\u00f3micas (CICVyA) INTA, Hurlingham, Buenos Aires, Argentina. gonzalez.sergio@inta.gob.ar","institution_ids":[]},{"raw_affiliation_string":"Instituto de Biotecnolog\u00eda, Centro Investigaci\u00f3n en Ciencias Veterinarias y Agron\u00f3micas (CICVyA) INTA, Hurlingham, Argentina","institution_ids":["https://openalex.org/I4210153948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004902649","display_name":"Bernardo Clavijo","orcid":"https://orcid.org/0000-0002-7597-2774"},"institutions":[{"id":"https://openalex.org/I4210100714","display_name":"Earlham Institute","ror":"https://ror.org/018cxtf62","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210100714"]},{"id":"https://openalex.org/I2799300731","display_name":"Norwich Research Park","ror":"https://ror.org/0062dz060","country_code":"GB","type":"archive","lineage":["https://openalex.org/I2799300731"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Bernardo Clavijo","raw_affiliation_strings":["Earlham Institute, Norwich Research Park, Norwich, NR4 7UG, UK","Earlham Institute, Norwich, UK"],"affiliations":[{"raw_affiliation_string":"Earlham Institute, Norwich Research Park, Norwich, NR4 7UG, UK","institution_ids":["https://openalex.org/I2799300731","https://openalex.org/I4210100714"]},{"raw_affiliation_string":"Earlham Institute, Norwich, UK","institution_ids":["https://openalex.org/I4210100714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023333423","display_name":"M\u00e1ximo Rivarola","orcid":"https://orcid.org/0000-0003-2818-1037"},"institutions":[{"id":"https://openalex.org/I4210153948","display_name":"National Agricultural Technology Institute","ror":"https://ror.org/04wm52x94","country_code":"AR","type":"funder","lineage":["https://openalex.org/I4210153948"]},{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"funder","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":true,"raw_author_name":"M\u00e1ximo Rivarola","raw_affiliation_strings":["Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas (CONICET), Godoy Cruz 2290, Buenos Aires, C1425FQB, Argentina. rivarola.maximo@inta.gob.ar","Instituto de Biotecnolog\u00eda, Centro Investigaci\u00f3n en Ciencias Veterinarias y Agron\u00f3micas (CICVyA) INTA, Hurlingham, Buenos Aires, Argentina. rivarola.maximo@inta.gob.ar","Instituto de Biotecnolog\u00eda, Centro Investigaci\u00f3n en Ciencias Veterinarias y Agron\u00f3micas (CICVyA) INTA, Hurlingham, Argentina","Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas (CONICET), Buenos Aires, Argentina"],"affiliations":[{"raw_affiliation_string":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas (CONICET), Godoy Cruz 2290, Buenos Aires, C1425FQB, Argentina. rivarola.maximo@inta.gob.ar","institution_ids":[]},{"raw_affiliation_string":"Instituto de Biotecnolog\u00eda, Centro Investigaci\u00f3n en Ciencias Veterinarias y Agron\u00f3micas (CICVyA) INTA, Hurlingham, Buenos Aires, Argentina. rivarola.maximo@inta.gob.ar","institution_ids":[]},{"raw_affiliation_string":"Instituto de Biotecnolog\u00eda, Centro Investigaci\u00f3n en Ciencias Veterinarias y Agron\u00f3micas (CICVyA) INTA, Hurlingham, Argentina","institution_ids":["https://openalex.org/I4210153948"]},{"raw_affiliation_string":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas (CONICET), Buenos Aires, Argentina","institution_ids":["https://openalex.org/I151201029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055267123","display_name":"Patricio Moreno","orcid":"https://orcid.org/0000-0002-3030-1491"},"institutions":[{"id":"https://openalex.org/I24354313","display_name":"University of Buenos Aires","ror":"https://ror.org/0081fs513","country_code":"AR","type":"education","lineage":["https://openalex.org/I24354313"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Patricio Moreno","raw_affiliation_strings":["Instituto de Ingenier\u00eda Biom\u00e9dica, Facultad de Ingenier\u00eda, Universidad de Buenos Aires, Buenos Aires, Argentina"],"affiliations":[{"raw_affiliation_string":"Instituto de Ingenier\u00eda Biom\u00e9dica, Facultad de Ingenier\u00eda, Universidad de Buenos Aires, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I24354313"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073142541","display_name":"Paula Fern\u00e1ndez","orcid":"https://orcid.org/0000-0002-4174-6138"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"funder","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I228664971","display_name":"National University of General San Mart\u00edn","ror":"https://ror.org/00v29jp57","country_code":"AR","type":"education","lineage":["https://openalex.org/I228664971"]},{"id":"https://openalex.org/I4210153948","display_name":"National Agricultural Technology Institute","ror":"https://ror.org/04wm52x94","country_code":"AR","type":"funder","lineage":["https://openalex.org/I4210153948"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Paula Fernandez","raw_affiliation_strings":["Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas (CONICET), Godoy Cruz 2290, Buenos Aires, C1425FQB, Argentina","Escuela de Ciencia y Tecnolog\u00eda, Universidad Nacional de San Mart\u00edn, San Mart\u00edn, Buenos Aires, Argentina","Instituto de Biotecnolog\u00eda, Centro Investigaci\u00f3n en Ciencias Veterinarias y Agron\u00f3micas (CICVyA) INTA, Hurlingham, Buenos Aires, Argentina","Escuela de Ciencia y Tecnolog\u00eda, Universidad Nacional de San Mart\u00edn, San Mart\u00edn, Argentina","Instituto de Biotecnolog\u00eda, Centro Investigaci\u00f3n en Ciencias Veterinarias y Agron\u00f3micas (CICVyA) INTA, Hurlingham, Argentina","Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas (CONICET), Buenos Aires, Argentina"],"affiliations":[{"raw_affiliation_string":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas (CONICET), Godoy Cruz 2290, Buenos Aires, C1425FQB, Argentina","institution_ids":["https://openalex.org/I151201029"]},{"raw_affiliation_string":"Escuela de Ciencia y Tecnolog\u00eda, Universidad Nacional de San Mart\u00edn, San Mart\u00edn, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I228664971"]},{"raw_affiliation_string":"Instituto de Biotecnolog\u00eda, Centro Investigaci\u00f3n en Ciencias Veterinarias y Agron\u00f3micas (CICVyA) INTA, Hurlingham, Buenos Aires, Argentina","institution_ids":[]},{"raw_affiliation_string":"Escuela de Ciencia y Tecnolog\u00eda, Universidad Nacional de San Mart\u00edn, San Mart\u00edn, Argentina","institution_ids":["https://openalex.org/I228664971"]},{"raw_affiliation_string":"Instituto de Biotecnolog\u00eda, Centro Investigaci\u00f3n en Ciencias Veterinarias y Agron\u00f3micas (CICVyA) INTA, Hurlingham, Argentina","institution_ids":["https://openalex.org/I4210153948"]},{"raw_affiliation_string":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas (CONICET), Buenos Aires, Argentina","institution_ids":["https://openalex.org/I151201029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074140420","display_name":"Joaqu\u0131\u0301n Dopazo","orcid":"https://orcid.org/0000-0003-3318-120X"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Joaqu\u00edn Dopazo","raw_affiliation_strings":["Computational Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia, Spain"],"affiliations":[{"raw_affiliation_string":"Computational Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia, Spain","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088303246","display_name":"Norma Paniego","orcid":"https://orcid.org/0000-0003-3906-5330"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"funder","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I4210153948","display_name":"National Agricultural Technology Institute","ror":"https://ror.org/04wm52x94","country_code":"AR","type":"funder","lineage":["https://openalex.org/I4210153948"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Norma Paniego","raw_affiliation_strings":["Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas (CONICET), Godoy Cruz 2290, Buenos Aires, C1425FQB, Argentina","Instituto de Biotecnolog\u00eda, Centro Investigaci\u00f3n en Ciencias Veterinarias y Agron\u00f3micas (CICVyA) INTA, Hurlingham, Buenos Aires, Argentina","Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas (CONICET), Buenos Aires, Argentina","Instituto de Biotecnolog\u00eda, Centro Investigaci\u00f3n en Ciencias Veterinarias y Agron\u00f3micas (CICVyA) INTA, Hurlingham, Argentina"],"affiliations":[{"raw_affiliation_string":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas (CONICET), Godoy Cruz 2290, Buenos Aires, C1425FQB, Argentina","institution_ids":["https://openalex.org/I151201029"]},{"raw_affiliation_string":"Instituto de Biotecnolog\u00eda, Centro Investigaci\u00f3n en Ciencias Veterinarias y Agron\u00f3micas (CICVyA) INTA, Hurlingham, Buenos Aires, Argentina","institution_ids":[]},{"raw_affiliation_string":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas (CONICET), Buenos Aires, Argentina","institution_ids":["https://openalex.org/I151201029"]},{"raw_affiliation_string":"Instituto de Biotecnolog\u00eda, Centro Investigaci\u00f3n en Ciencias Veterinarias y Agron\u00f3micas (CICVyA) INTA, Hurlingham, Argentina","institution_ids":["https://openalex.org/I4210153948"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5023333423","https://openalex.org/A5060347222"],"corresponding_institution_ids":["https://openalex.org/I151201029","https://openalex.org/I4210153948"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.4491,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.62423899,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"18","issue":"1","first_page":"121","last_page":"121"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6825363636016846},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5424587726593018},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.482927531003952},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.4810807406902313},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4646754860877991},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.44473809003829956},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.4397995173931122},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.43213874101638794},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.4280937910079956},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4165152609348297},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.41006767749786377},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3687572479248047},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36380624771118164},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3489672541618347},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.32319754362106323},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3215392827987671},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3039686679840088},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.2760363817214966},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25190553069114685},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14810442924499512},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11373722553253174},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.09106948971748352},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.08723175525665283}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6825363636016846},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5424587726593018},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.482927531003952},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.4810807406902313},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4646754860877991},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.44473809003829956},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.4397995173931122},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.43213874101638794},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.4280937910079956},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4165152609348297},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.41006767749786377},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3687572479248047},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36380624771118164},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3489672541618347},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.32319754362106323},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3215392827987671},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3039686679840088},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2760363817214966},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25190553069114685},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14810442924499512},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11373722553253174},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.09106948971748352},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.08723175525665283},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-017-1494-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1494-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1494-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28222698","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28222698","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:americanae.aecid.es:3114747","is_oa":true,"landing_page_url":"http://americanae.aecid.es/americanae/es/registros/registro.do?tipoRegistro=MTD&idBib=3114747","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC bioinformatics 18 (121) : 1-9. (2017)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:localhost:20.500.12123/502","is_oa":true,"landing_page_url":"https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1494-2","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC bioinformatics  18 (121) : 1-9. (2017)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5320735","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5320735","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1494-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1494-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1494-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G407047773","display_name":null,"funder_award_id":"BB/J004669/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5413484791","display_name":null,"funder_award_id":"BBS/E/T/000PR5885","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6123500221","display_name":null,"funder_award_id":"BBS/E/T/000PR6193","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320321594","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59"},{"id":"https://openalex.org/F4320326565","display_name":"Instituto Nacional de Tecnolog\u00eda Agropecuaria","ror":"https://ror.org/04wm52x94"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320338362","display_name":"FP7 International Cooperation","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2590817183.pdf","grobid_xml":"https://content.openalex.org/works/W2590817183.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1490553060","https://openalex.org/W1568479515","https://openalex.org/W1967204795","https://openalex.org/W1978088324","https://openalex.org/W1996490511","https://openalex.org/W2004149738","https://openalex.org/W2011657487","https://openalex.org/W2015968355","https://openalex.org/W2022296304","https://openalex.org/W2022366078","https://openalex.org/W2047106554","https://openalex.org/W2055043387","https://openalex.org/W2098229525","https://openalex.org/W2099753867","https://openalex.org/W2100895966","https://openalex.org/W2103017472","https://openalex.org/W2112589398","https://openalex.org/W2117752917","https://openalex.org/W2123171788","https://openalex.org/W2128623602","https://openalex.org/W2134138351","https://openalex.org/W2136482257","https://openalex.org/W2151397621","https://openalex.org/W2157302781","https://openalex.org/W2163965551","https://openalex.org/W2164085656","https://openalex.org/W2164154943","https://openalex.org/W2236822143","https://openalex.org/W2299227554","https://openalex.org/W2519703809","https://openalex.org/W2530368139"],"related_works":["https://openalex.org/W3111061871","https://openalex.org/W2099626126","https://openalex.org/W4205801320","https://openalex.org/W2151651283","https://openalex.org/W2315002870","https://openalex.org/W2689499942","https://openalex.org/W4323349791","https://openalex.org/W2160942889","https://openalex.org/W4294753111","https://openalex.org/W2169547867"],"abstract_inverted_index":{"ATGC":[0],"transcriptomics":[1],"provides":[2],"access":[3],"to":[4,12],"non-expert":[5],"computer":[6],"users":[7],"and":[8,17,24],"small":[9],"research":[10],"groups":[11],"a":[13],"scalable":[14],"storage":[15],"option":[16],"simple":[18],"data":[19],"integration,":[20],"including":[21],"database":[22],"administration":[23],"management.":[25],"The":[26],"software":[27],"is":[28],"freely":[29],"available":[30],"under":[31],"the":[32],"terms":[33],"of":[34],"GNU":[35],"public":[36],"license":[37],"at":[38],"http://atgcinta.sourceforge.net":[39],".":[40]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
