{"id":"https://openalex.org/W2603067364","doi":"https://doi.org/10.1186/s12859-017-1473-7","title":"Prediction of virus-host infectious association by supervised learning methods","display_name":"Prediction of virus-host infectious association by supervised learning methods","publication_year":2017,"publication_date":"2017-03-01","ids":{"openalex":"https://openalex.org/W2603067364","doi":"https://doi.org/10.1186/s12859-017-1473-7","mag":"2603067364","pmid":"https://pubmed.ncbi.nlm.nih.gov/28361670"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1473-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1473-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-017-1473-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-017-1473-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013056716","display_name":"Mengge Zhang","orcid":"https://orcid.org/0009-0000-6841-5462"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mengge Zhang","raw_affiliation_strings":["Molecular and Computational Biology Program, University of Southern California, Los Angeles, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular and Computational Biology Program, University of Southern California, Los Angeles, California, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041435352","display_name":"Lianping Yang","orcid":"https://orcid.org/0000-0002-6210-2534"},"institutions":[{"id":"https://openalex.org/I9224756","display_name":"Northeastern University","ror":"https://ror.org/03awzbc87","country_code":"CN","type":"education","lineage":["https://openalex.org/I9224756"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lianping Yang","raw_affiliation_strings":["College of Sciences, Northeastern University, Shenyang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Sciences, Northeastern University, Shenyang, China","institution_ids":["https://openalex.org/I9224756"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100720538","display_name":"Jie Ren","orcid":"https://orcid.org/0000-0002-6450-3163"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jie Ren","raw_affiliation_strings":["Molecular and Computational Biology Program, University of Southern California, Los Angeles, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular and Computational Biology Program, University of Southern California, Los Angeles, California, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055904764","display_name":"Nathan A. Ahlgren","orcid":"https://orcid.org/0000-0001-7617-4435"},"institutions":[{"id":"https://openalex.org/I130785548","display_name":"Clark University","ror":"https://ror.org/04123ky43","country_code":"US","type":"education","lineage":["https://openalex.org/I130785548"]},{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nathan A. Ahlgren","raw_affiliation_strings":["Biology Department, Clark University, Worcester, Massachusetts, USA","Department of Biological Sciences and Wrigley Institute for Environmental Studies, University of Southern California, Los Angeles, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biology Department, Clark University, Worcester, Massachusetts, USA","institution_ids":["https://openalex.org/I130785548"]},{"raw_affiliation_string":"Department of Biological Sciences and Wrigley Institute for Environmental Studies, University of Southern California, Los Angeles, California, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035958952","display_name":"Jed A. Fuhrman","orcid":"https://orcid.org/0000-0002-2361-1985"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jed A. Fuhrman","raw_affiliation_strings":["Department of Biological Sciences and Wrigley Institute for Environmental Studies, University of Southern California, Los Angeles, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences and Wrigley Institute for Environmental Studies, University of Southern California, Los Angeles, California, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022255550","display_name":"Fengzhu Sun","orcid":"https://orcid.org/0000-0002-8552-043X"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fengzhu Sun","raw_affiliation_strings":["Centre for Computational Systems Biology, School of Mathematical Sciences, Fudan University, Shanhai, China. fsun@usc.edu","Molecular and Computational Biology Program, University of Southern California, Los Angeles, California, USA. fsun@usc.edu","Centre for Computational Systems Biology, School of Mathematical Sciences, Fudan University, Shanhai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Computational Systems Biology, School of Mathematical Sciences, Fudan University, Shanhai, China. fsun@usc.edu","institution_ids":[]},{"raw_affiliation_string":"Molecular and Computational Biology Program, University of Southern California, Los Angeles, California, USA. fsun@usc.edu","institution_ids":[]},{"raw_affiliation_string":"Centre for Computational Systems Biology, School of Mathematical Sciences, Fudan University, Shanhai, China","institution_ids":["https://openalex.org/I24943067"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5022255550"],"corresponding_institution_ids":["https://openalex.org/I24943067"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":4.4591,"has_fulltext":true,"cited_by_count":50,"citation_normalized_percentile":{"value":0.94239856,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"18","issue":"S3","first_page":"60","last_page":"60"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.6464999914169312,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.6464999914169312,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.1526000052690506,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.04670000076293945,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.5777403712272644},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.5721786618232727},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5428985357284546},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.49187302589416504},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.4699060320854187},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.4555964469909668},{"id":"https://openalex.org/keywords/bayes-theorem","display_name":"Bayes' theorem","score":0.4197095036506653},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4028854966163635},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3597796559333801},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34623298048973083},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1562613844871521},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13093116879463196},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.12210673093795776}],"concepts":[{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.5777403712272644},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.5721786618232727},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5428985357284546},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.49187302589416504},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.4699060320854187},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.4555964469909668},{"id":"https://openalex.org/C207201462","wikidata":"https://www.wikidata.org/wiki/Q182505","display_name":"Bayes' theorem","level":3,"score":0.4197095036506653},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4028854966163635},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3597796559333801},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34623298048973083},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1562613844871521},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13093116879463196},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.12210673093795776},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004279","descriptor_name":"DNA, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004279","descriptor_name":"DNA, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004279","descriptor_name":"DNA, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004279","descriptor_name":"DNA, Viral","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D004279","descriptor_name":"DNA, Viral","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D004279","descriptor_name":"DNA, Viral","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-017-1473-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1473-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-017-1473-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28361670","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28361670","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:commons.clarku.edu:faculty_biology-1067","is_oa":true,"landing_page_url":"https://commons.clarku.edu/faculty_biology/67","pdf_url":null,"source":{"id":"https://openalex.org/S4377196688","display_name":"Clark Digital Commons (Clark University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I130785548","host_organization_name":"Clark University","host_organization_lineage":["https://openalex.org/I130785548"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Biology","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5374558","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5374558","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1473-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1473-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-017-1473-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6000000238418579}],"awards":[{"id":"https://openalex.org/G4895756154","display_name":null,"funder_award_id":"1136818","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G603824912","display_name":null,"funder_award_id":"31301086","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6984167891","display_name":null,"funder_award_id":"DMS-1518001","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306202","display_name":"Gordon and Betty Moore Foundation","ror":"https://ror.org/006wxqw41"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321851","display_name":"Fudan University","ror":"https://ror.org/013q1eq08"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2603067364.pdf","grobid_xml":"https://content.openalex.org/works/W2603067364.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W179179905","https://openalex.org/W1480376833","https://openalex.org/W1523894467","https://openalex.org/W1563088657","https://openalex.org/W1600463518","https://openalex.org/W1728842521","https://openalex.org/W1964027278","https://openalex.org/W1968363797","https://openalex.org/W1971730464","https://openalex.org/W1973948212","https://openalex.org/W1974399010","https://openalex.org/W1989021204","https://openalex.org/W1991860284","https://openalex.org/W1995614275","https://openalex.org/W2012049965","https://openalex.org/W2015035889","https://openalex.org/W2028402416","https://openalex.org/W2041397659","https://openalex.org/W2081319466","https://openalex.org/W2088775137","https://openalex.org/W2096116532","https://openalex.org/W2097146199","https://openalex.org/W2097294015","https://openalex.org/W2101534062","https://openalex.org/W2110584665","https://openalex.org/W2122410182","https://openalex.org/W2123006317","https://openalex.org/W2128769815","https://openalex.org/W2131415145","https://openalex.org/W2135046866","https://openalex.org/W2138486754","https://openalex.org/W2150959949","https://openalex.org/W2151813467","https://openalex.org/W2153635508","https://openalex.org/W2153905079","https://openalex.org/W2157825442","https://openalex.org/W2158807263","https://openalex.org/W2159340193","https://openalex.org/W2161251845","https://openalex.org/W2163460114","https://openalex.org/W2169899471","https://openalex.org/W2335836975","https://openalex.org/W2337975252","https://openalex.org/W2338907071","https://openalex.org/W2523201192","https://openalex.org/W2623293810","https://openalex.org/W2911964244","https://openalex.org/W3120421331","https://openalex.org/W4229671854","https://openalex.org/W4239871258","https://openalex.org/W6600755840"],"related_works":["https://openalex.org/W2015535546","https://openalex.org/W1994449010","https://openalex.org/W2330186985","https://openalex.org/W2055448750","https://openalex.org/W2950447380","https://openalex.org/W2345730070","https://openalex.org/W2107854630","https://openalex.org/W4319294554","https://openalex.org/W1986608492","https://openalex.org/W3134563641"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,323,385,414],"study":[2,58,81,120,380],"of":[3,15,29,49,91,94,111,171,184,191,194,210,270,288,309,312,353,368,375,399,425],"virus-host":[4,59,82],"infectious":[5,83,142,212,233,427],"association":[6],"is":[7,63,165,264,274,282],"important":[8],"for":[9,140,146,188,214,268,293,410],"understanding":[10],"the":[11,42,45,61,98,109,114,159,169,182,185,189,192,208,242,248,258,262,272,279,285,307,354,369,376,379,393,423],"functions":[12],"and":[13,20,51,102,136,176,267,338,373,407],"dynamics":[14],"microbial":[16],"communities.":[17],"Both":[18],"cellular":[19],"fractionated":[21],"viral":[22,30,95,219,310,359,408,431],"metagenomic":[23,197,318],"data":[24],"generate":[25],"a":[26,202,215],"large":[27],"number":[28,110],"contigs":[31,195,311,377,409],"with":[32,151,229,241,320,327,392],"missing":[33],"host":[34,149,217,227,260],"information.":[35],"Although":[36],"relative":[37,99,243,394],"simple":[38],"methods":[39,71,124,334],"based":[40,72,335],"on":[41,73,224,336,345],"similarity":[43],"between":[44],"word":[46,74,92,100,105,116,244,280,328,346,395],"frequency":[47,101,245,329],"vectors":[48],"viruses":[50,145,213,252,295,357,372,400,406,429],"bacterial":[52,148,226,412],"hosts":[53,193,308],"have":[54],"been":[55],"developed":[56],"to":[57,80,167,206,404,421],"associations,":[60],"problem":[62],"significantly":[64],"understudied.":[65],"We":[66,86,118,179,199,299],"hypothesize":[67],"that":[68,237,302,350],"machine":[69,122,173,290,388],"learning":[70,123,174,291,389],"frequencies":[75,93,106,396],"can":[76,305,401,418],"be":[77,402,419],"efficiently":[78],"used":[79,166,403,420],"associations.":[84],"METHODS:":[85],"investigate":[87],"four":[88],"different":[89,172],"representations":[90],"sequences":[96],"including":[97,125],"three":[103],"normalized":[104],"by":[107],"subtracting":[108],"expected":[112],"from":[113,143],"observed":[115],"counts.":[117],"also":[119,200,300],"five":[121,269],"logistic":[126],"regression,":[127],"support":[128],"vector":[129,246,330],"machine,":[130],"random":[131,238,324,386],"forest,":[132],"Gaussian":[133],"naive":[134,138],"Bayes":[135,139],"Bernoulli":[137],"separating":[141],"non-infectious":[144],"nine":[147,225,259],"genera":[150,228],"at":[152,230,314],"least":[153,231,315],"45":[154,232],"infecting":[155,253,296],"viruses.":[156],"Area":[157],"under":[158],"receiver":[160],"operating":[161],"characteristic":[162],"curve":[163],"(AUC)":[164],"compare":[168],"performance":[170,183],"method":[175,187,205,304,390],"feature":[177],"combinations.":[178],"then":[180],"evaluate":[181],"best":[186,249],"identification":[190],"in":[196,218,250,317,358,378,430],"studies.":[198],"develop":[201],"maximum":[203,415],"likelihood":[204,416],"estimate":[207,349,422],"fraction":[209,424],"true":[211,426],"given":[216],"tagging":[220,360,432],"experiments.":[221,433],"RESULTS:":[222],"Based":[223,344],"viruses,":[234],"we":[235,348],"show":[236,301],"forest":[239,325,387],"together":[240,326,391],"performs":[247],"identifying":[251,294],"particular":[254,297],"hosts.":[255,298,413],"For":[256],"all":[257],"genera,":[261],"AUC":[263,273],"over":[265],"0.85":[266],"them,":[271],"higher":[275],"than":[276],"0.98":[277],"when":[278],"size":[281],"6":[283],"indicating":[284],"high":[286,321],"accuracy":[287],"using":[289],"approaches":[292],"our":[303],"predict":[306,405],"length":[313],"1kbps":[316],"studies":[319],"accuracy.":[322],"outperforms":[331],"current":[332],"available":[333],"Manhattan":[337],"[Formula:":[339],"see":[340],"text]":[341],"dissimilarity":[342],"measures.":[343],"frequencies,":[347],"about":[351,366],"95%":[352],"identified":[355,370],"T4-like":[356],"experiment":[361],"infect":[362,382],"Synechococcus,":[363],"while":[364],"only":[365],"29%":[367],"non-T4-like":[371],"30%":[374],"potentially":[381],"Synechococcus.":[383],"CONCLUSIONS:":[384],"as":[397],"features":[398],"specific":[411],"approach":[417],"associated":[428]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":2}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
