{"id":"https://openalex.org/W2602355001","doi":"https://doi.org/10.1186/s12859-017-1465-7","title":"SheddomeDB: the ectodomain shedding database for membrane-bound shed markers","display_name":"SheddomeDB: the ectodomain shedding database for membrane-bound shed markers","publication_year":2017,"publication_date":"2017-03-01","ids":{"openalex":"https://openalex.org/W2602355001","doi":"https://doi.org/10.1186/s12859-017-1465-7","mag":"2602355001","pmid":"https://pubmed.ncbi.nlm.nih.gov/28361715"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-017-1465-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1465-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1465-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1465-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083960368","display_name":"Wei-Sheng Tien","orcid":null},"institutions":[{"id":"https://openalex.org/I84653119","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784","country_code":"TW","type":"facility","lineage":["https://openalex.org/I84653119"]},{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Wei-Sheng Tien","raw_affiliation_strings":["Bioinformatics Program, Taiwan International Graduate Program, Academia Sinica, Taipei, 115, Taiwan","Institute of Biomedical Informatics, National Yang Ming University, Taipei, 112, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Program, Taiwan International Graduate Program, Academia Sinica, Taipei, 115, Taiwan","institution_ids":["https://openalex.org/I84653119"]},{"raw_affiliation_string":"Institute of Biomedical Informatics, National Yang Ming University, Taipei, 112, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058778407","display_name":"Jun\u2010Hong Chen","orcid":"https://orcid.org/0000-0002-5346-2511"},"institutions":[{"id":"https://openalex.org/I49645291","display_name":"National Taipei University of Education","ror":"https://ror.org/02bzpph30","country_code":"TW","type":"education","lineage":["https://openalex.org/I49645291"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jun-Hong Chen","raw_affiliation_strings":["Department of Computer Science, National Taipei University of Education, Taipei, 106, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, National Taipei University of Education, Taipei, 106, Taiwan","institution_ids":["https://openalex.org/I49645291"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103209475","display_name":"Kun\u2010Pin Wu","orcid":"https://orcid.org/0000-0002-3108-0221"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Kun-Pin Wu","raw_affiliation_strings":["Institute of Biomedical Informatics, National Yang Ming University, Taipei, 112, Taiwan. kpwu@ym.edu.tw","Institute of Biomedical Informatics, National Yang Ming University, Taipei, 112, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Informatics, National Yang Ming University, Taipei, 112, Taiwan. kpwu@ym.edu.tw","institution_ids":[]},{"raw_affiliation_string":"Institute of Biomedical Informatics, National Yang Ming University, Taipei, 112, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5083960368"],"corresponding_institution_ids":["https://openalex.org/I148366613","https://openalex.org/I84653119"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.059,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.91225247,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"18","issue":"S3","first_page":"42","last_page":"42"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.29260000586509705,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.29260000586509705,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10725","display_name":"RNA Interference and Gene Delivery","score":0.1632000058889389,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10617","display_name":"Cellular transport and secretion","score":0.09109999984502792,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ectodomain","display_name":"Ectodomain","score":0.9465286731719971},{"id":"https://openalex.org/keywords/membrane-protein","display_name":"Membrane protein","score":0.6679616570472717},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6085510849952698},{"id":"https://openalex.org/keywords/secretion","display_name":"Secretion","score":0.536115825176239},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.5249036550521851},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.49907755851745605},{"id":"https://openalex.org/keywords/cell-membrane","display_name":"Cell membrane","score":0.447174072265625},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.44707176089286804},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.36987683176994324},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34729278087615967},{"id":"https://openalex.org/keywords/membrane","display_name":"Membrane","score":0.3202364444732666},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2661339044570923},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.08655986189842224},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08529660105705261}],"concepts":[{"id":"https://openalex.org/C1009742","wikidata":"https://www.wikidata.org/wiki/Q5333998","display_name":"Ectodomain","level":3,"score":0.9465286731719971},{"id":"https://openalex.org/C144647389","wikidata":"https://www.wikidata.org/wiki/Q423042","display_name":"Membrane protein","level":3,"score":0.6679616570472717},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6085510849952698},{"id":"https://openalex.org/C49039625","wikidata":"https://www.wikidata.org/wiki/Q84230","display_name":"Secretion","level":2,"score":0.536115825176239},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.5249036550521851},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.49907755851745605},{"id":"https://openalex.org/C2778106830","wikidata":"https://www.wikidata.org/wiki/Q29548","display_name":"Cell membrane","level":3,"score":0.447174072265625},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.44707176089286804},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.36987683176994324},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34729278087615967},{"id":"https://openalex.org/C41625074","wikidata":"https://www.wikidata.org/wiki/Q176088","display_name":"Membrane","level":2,"score":0.3202364444732666},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2661339044570923},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.08655986189842224},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08529660105705261},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-017-1465-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1465-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1465-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28361715","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28361715","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5374707","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5374707","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-017-1465-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-017-1465-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-017-1465-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322795","display_name":"Ministry of Science and Technology, Taiwan","ror":"https://ror.org/02kv4zf79"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2602355001.pdf","grobid_xml":"https://content.openalex.org/works/W2602355001.grobid-xml"},"referenced_works_count":477,"referenced_works":["https://openalex.org/W60534776","https://openalex.org/W80748578","https://openalex.org/W145579111","https://openalex.org/W177079745","https://openalex.org/W189981911","https://openalex.org/W890092215","https://openalex.org/W1481634568","https://openalex.org/W1481809543","https://openalex.org/W1487423556","https://openalex.org/W1487706069","https://openalex.org/W1493125924","https://openalex.org/W1497331930","https://openalex.org/W1502174619","https://openalex.org/W1507476171","https://openalex.org/W1509556944","https://openalex.org/W1513759621","https://openalex.org/W1515534482","https://openalex.org/W1517476370","https://openalex.org/W1520401591","https://openalex.org/W1523878042","https://openalex.org/W1538058086","https://openalex.org/W1539766563","https://openalex.org/W1540999082","https://openalex.org/W1542521331","https://openalex.org/W1562537954","https://openalex.org/W1575383536","https://openalex.org/W1580230845","https://openalex.org/W1585640238","https://openalex.org/W1592121394","https://openalex.org/W1595469935","https://openalex.org/W1596272559","https://openalex.org/W1604357874","https://openalex.org/W1605750725","https://openalex.org/W1606086042","https://openalex.org/W1608968494","https://openalex.org/W1620789353","https://openalex.org/W1623115463","https://openalex.org/W1642486132","https://openalex.org/W1767274962","https://openalex.org/W1774160083","https://openalex.org/W1787206380","https://openalex.org/W1815758482","https://openalex.org/W1844728973","https://openalex.org/W1846582312","https://openalex.org/W1869320174","https://openalex.org/W1871950693","https://openalex.org/W1882949371","https://openalex.org/W1903942543","https://openalex.org/W1903969811","https://openalex.org/W1909952294","https://openalex.org/W1919230608","https://openalex.org/W1931843124","https://openalex.org/W1936646108","https://openalex.org/W1950008523","https://openalex.org/W1950889918","https://openalex.org/W1953569147","https://openalex.org/W1963623884","https://openalex.org/W1963867594","https://openalex.org/W1964276596","https://openalex.org/W1964279522","https://openalex.org/W1964778321","https://openalex.org/W1965183272","https://openalex.org/W1965208860","https://openalex.org/W1966023465","https://openalex.org/W1966128754","https://openalex.org/W1966870353","https://openalex.org/W1966870605","https://openalex.org/W1968181166","https://openalex.org/W1969898475","https://openalex.org/W1970337062","https://openalex.org/W1970736582","https://openalex.org/W1970908071","https://openalex.org/W1970933358","https://openalex.org/W1970975951","https://openalex.org/W1971468779","https://openalex.org/W1972026977","https://openalex.org/W1972084678","https://openalex.org/W1972197249","https://openalex.org/W1972500822","https://openalex.org/W1972808199","https://openalex.org/W1973238005","https://openalex.org/W1974035523","https://openalex.org/W1974225826","https://openalex.org/W1974666338","https://openalex.org/W1974972022","https://openalex.org/W1975075795","https://openalex.org/W1975913203","https://openalex.org/W1976681543","https://openalex.org/W1977009918","https://openalex.org/W1977139244","https://openalex.org/W1978285905","https://openalex.org/W1979012691","https://openalex.org/W1979446198","https://openalex.org/W1979652891","https://openalex.org/W1979748640","https://openalex.org/W1979850485","https://openalex.org/W1980191945","https://openalex.org/W1980276310","https://openalex.org/W1982174838","https://openalex.org/W1982271544","https://openalex.org/W1983160604","https://openalex.org/W1983299047","https://openalex.org/W1983699546","https://openalex.org/W1983921365","https://openalex.org/W1984065470","https://openalex.org/W1985613060","https://openalex.org/W1985962253","https://openalex.org/W1986115325","https://openalex.org/W1986423409","https://openalex.org/W1986978780","https://openalex.org/W1987493605","https://openalex.org/W1989171408","https://openalex.org/W1989653346","https://openalex.org/W1990302146","https://openalex.org/W1990388392","https://openalex.org/W1992282653","https://openalex.org/W1993426755","https://openalex.org/W1994379399","https://openalex.org/W1995217818","https://openalex.org/W1995290686","https://openalex.org/W1995580918","https://openalex.org/W1996595749","https://openalex.org/W1997005830","https://openalex.org/W1997538331","https://openalex.org/W1997956540","https://openalex.org/W1998086237","https://openalex.org/W1998747985","https://openalex.org/W1999201913","https://openalex.org/W1999412359","https://openalex.org/W1999505837","https://openalex.org/W2000493585","https://openalex.org/W2000647523","https://openalex.org/W2002448780","https://openalex.org/W2002765492","https://openalex.org/W2003659505","https://openalex.org/W2004176617","https://openalex.org/W2004332359","https://openalex.org/W2004588605","https://openalex.org/W2004877225","https://openalex.org/W2005413045","https://openalex.org/W2005920859","https://openalex.org/W2006494377","https://openalex.org/W2006876731","https://openalex.org/W2008056744","https://openalex.org/W2008623926","https://openalex.org/W2008987190","https://openalex.org/W2009285665","https://openalex.org/W2009802325","https://openalex.org/W2010323315","https://openalex.org/W2010725654","https://openalex.org/W2010832262","https://openalex.org/W2011111584","https://openalex.org/W2011964739","https://openalex.org/W2012816457","https://openalex.org/W2013458726","https://openalex.org/W2014582090","https://openalex.org/W2014710004","https://openalex.org/W2015087305","https://openalex.org/W2015520440","https://openalex.org/W2016349514","https://openalex.org/W2016779630","https://openalex.org/W2017365291","https://openalex.org/W2017517534","https://openalex.org/W2018275608","https://openalex.org/W2019007505","https://openalex.org/W2019864631","https://openalex.org/W2020105998","https://openalex.org/W2020939566","https://openalex.org/W2022722296","https://openalex.org/W2023951019","https://openalex.org/W2024069032","https://openalex.org/W2024341936","https://openalex.org/W2024656166","https://openalex.org/W2025554716","https://openalex.org/W2026670395","https://openalex.org/W2026780577","https://openalex.org/W2027264108","https://openalex.org/W2027526894","https://openalex.org/W2027924212","https://openalex.org/W2028337591","https://openalex.org/W2029833276","https://openalex.org/W2030086679","https://openalex.org/W2033020698","https://openalex.org/W2033166554","https://openalex.org/W2034260461","https://openalex.org/W2035042415","https://openalex.org/W2035441954","https://openalex.org/W2035602414","https://openalex.org/W2035838135","https://openalex.org/W2036798259","https://openalex.org/W2037606237","https://openalex.org/W2039418629","https://openalex.org/W2039663245","https://openalex.org/W2040012541","https://openalex.org/W2040034810","https://openalex.org/W2040344368","https://openalex.org/W2040400232","https://openalex.org/W2041171856","https://openalex.org/W2041304401","https://openalex.org/W2041324213","https://openalex.org/W2041373561","https://openalex.org/W2041479851","https://openalex.org/W2041614082","https://openalex.org/W2041768995","https://openalex.org/W2042082983","https://openalex.org/W2042316813","https://openalex.org/W2042334753","https://openalex.org/W2043348153","https://openalex.org/W2043521546","https://openalex.org/W2043794272","https://openalex.org/W2043898865","https://openalex.org/W2044863101","https://openalex.org/W2045397082","https://openalex.org/W2045730998","https://openalex.org/W2046238630","https://openalex.org/W2046399481","https://openalex.org/W2046448349","https://openalex.org/W2046666360","https://openalex.org/W2047052174","https://openalex.org/W2047276059","https://openalex.org/W2047317128","https://openalex.org/W2047321419","https://openalex.org/W2047757567","https://openalex.org/W2048660921","https://openalex.org/W2048680674","https://openalex.org/W2048760781","https://openalex.org/W2049271604","https://openalex.org/W2049640657","https://openalex.org/W2049720707","https://openalex.org/W2049979640","https://openalex.org/W2051171636","https://openalex.org/W2053191250","https://openalex.org/W2053419164","https://openalex.org/W2054365163","https://openalex.org/W2054576826","https://openalex.org/W2054664457","https://openalex.org/W2054725891","https://openalex.org/W2055391669","https://openalex.org/W2055588429","https://openalex.org/W2056025248","https://openalex.org/W2056447026","https://openalex.org/W2056855407","https://openalex.org/W2056943748","https://openalex.org/W2057223895","https://openalex.org/W2057292211","https://openalex.org/W2057483098","https://openalex.org/W2057680379","https://openalex.org/W2057736002","https://openalex.org/W2057916390","https://openalex.org/W2058058212","https://openalex.org/W2058287822","https://openalex.org/W2058711732","https://openalex.org/W2058806398","https://openalex.org/W2059011964","https://openalex.org/W2059200706","https://openalex.org/W2059420961","https://openalex.org/W2059533280","https://openalex.org/W2059621384","https://openalex.org/W2060197301","https://openalex.org/W2061252374","https://openalex.org/W2061916545","https://openalex.org/W2061989337","https://openalex.org/W2062307561","https://openalex.org/W2063298867","https://openalex.org/W2063972197","https://openalex.org/W2064658722","https://openalex.org/W2064911678","https://openalex.org/W2065297127","https://openalex.org/W2065684180","https://openalex.org/W2065729749","https://openalex.org/W2065755128","https://openalex.org/W2066977229","https://openalex.org/W2067550221","https://openalex.org/W2067690272","https://openalex.org/W2067979388","https://openalex.org/W2068089233","https://openalex.org/W2068203030","https://openalex.org/W2068480808","https://openalex.org/W2068843202","https://openalex.org/W2069327083","https://openalex.org/W2069974741","https://openalex.org/W2070258464","https://openalex.org/W2070307293","https://openalex.org/W2070814481","https://openalex.org/W2071807694","https://openalex.org/W2072219853","https://openalex.org/W2072551243","https://openalex.org/W2072757837","https://openalex.org/W2073129561","https://openalex.org/W2073738061","https://openalex.org/W2073758395","https://openalex.org/W2074912245","https://openalex.org/W2075501725","https://openalex.org/W2076126942","https://openalex.org/W2076379612","https://openalex.org/W2076496193","https://openalex.org/W2076622937","https://openalex.org/W2076770982","https://openalex.org/W2076927767","https://openalex.org/W2077508585","https://openalex.org/W2077774363","https://openalex.org/W2078081175","https://openalex.org/W2078401315","https://openalex.org/W2079074438","https://openalex.org/W2079634002","https://openalex.org/W2080399344","https://openalex.org/W2080449459","https://openalex.org/W2080511294","https://openalex.org/W2080737967","https://openalex.org/W2081282825","https://openalex.org/W2081353232","https://openalex.org/W2081656219","https://openalex.org/W2082184188","https://openalex.org/W2082337923","https://openalex.org/W2082573867","https://openalex.org/W2083771712","https://openalex.org/W2085258824","https://openalex.org/W2085643863","https://openalex.org/W2087744833","https://openalex.org/W2087893797","https://openalex.org/W2088267142","https://openalex.org/W2089027583","https://openalex.org/W2089570814","https://openalex.org/W2091499641","https://openalex.org/W2091880298","https://openalex.org/W2092166826","https://openalex.org/W2092485298","https://openalex.org/W2093159369","https://openalex.org/W2093498736","https://openalex.org/W2094309295","https://openalex.org/W2094371537","https://openalex.org/W2094393090","https://openalex.org/W2094496000","https://openalex.org/W2094984096","https://openalex.org/W2095051052","https://openalex.org/W2095368445","https://openalex.org/W2096372265","https://openalex.org/W2097078118","https://openalex.org/W2097305123","https://openalex.org/W2097727654","https://openalex.org/W2098958594","https://openalex.org/W2099417196","https://openalex.org/W2100010904","https://openalex.org/W2100638553","https://openalex.org/W2102599317","https://openalex.org/W2103227209","https://openalex.org/W2103451351","https://openalex.org/W2103553030","https://openalex.org/W2105878567","https://openalex.org/W2106530461","https://openalex.org/W2108565475","https://openalex.org/W2109099411","https://openalex.org/W2110717286","https://openalex.org/W2111314225","https://openalex.org/W2111980811","https://openalex.org/W2112816805","https://openalex.org/W2114016178","https://openalex.org/W2114625470","https://openalex.org/W2114678556","https://openalex.org/W2115028867","https://openalex.org/W2115282334","https://openalex.org/W2115794657","https://openalex.org/W2116173202","https://openalex.org/W2116934558","https://openalex.org/W2117052435","https://openalex.org/W2117100825","https://openalex.org/W2117123684","https://openalex.org/W2117340860","https://openalex.org/W2117593197","https://openalex.org/W2118401604","https://openalex.org/W2119445810","https://openalex.org/W2119593008","https://openalex.org/W2119821739","https://openalex.org/W2120584290","https://openalex.org/W2121572054","https://openalex.org/W2121652791","https://openalex.org/W2122215403","https://openalex.org/W2122525868","https://openalex.org/W2123000765","https://openalex.org/W2123869107","https://openalex.org/W2125713429","https://openalex.org/W2126972955","https://openalex.org/W2128503400","https://openalex.org/W2129422864","https://openalex.org/W2129959299","https://openalex.org/W2130095241","https://openalex.org/W2133865154","https://openalex.org/W2134533989","https://openalex.org/W2134589440","https://openalex.org/W2134595208","https://openalex.org/W2137033699","https://openalex.org/W2137209625","https://openalex.org/W2137592112","https://openalex.org/W2137974862","https://openalex.org/W2137981987","https://openalex.org/W2138642580","https://openalex.org/W2141606521","https://openalex.org/W2143561528","https://openalex.org/W2144135250","https://openalex.org/W2144621689","https://openalex.org/W2145444883","https://openalex.org/W2145706297","https://openalex.org/W2145957695","https://openalex.org/W2146790197","https://openalex.org/W2147443000","https://openalex.org/W2148240710","https://openalex.org/W2148687074","https://openalex.org/W2149109717","https://openalex.org/W2149666315","https://openalex.org/W2149677668","https://openalex.org/W2149707185","https://openalex.org/W2149812170","https://openalex.org/W2149848238","https://openalex.org/W2150318484","https://openalex.org/W2150700588","https://openalex.org/W2151912994","https://openalex.org/W2153266189","https://openalex.org/W2153417097","https://openalex.org/W2153566920","https://openalex.org/W2153991213","https://openalex.org/W2154658376","https://openalex.org/W2154915481","https://openalex.org/W2156482661","https://openalex.org/W2158152050","https://openalex.org/W2159141617","https://openalex.org/W2159428875","https://openalex.org/W2161934458","https://openalex.org/W2162841970","https://openalex.org/W2162848791","https://openalex.org/W2163387755","https://openalex.org/W2163429946","https://openalex.org/W2163932216","https://openalex.org/W2166487831","https://openalex.org/W2166516315","https://openalex.org/W2166624955","https://openalex.org/W2166650533","https://openalex.org/W2167693778","https://openalex.org/W2167738192","https://openalex.org/W2169382343","https://openalex.org/W2169871780","https://openalex.org/W2170017292","https://openalex.org/W2170322022","https://openalex.org/W2172027567","https://openalex.org/W2172059940","https://openalex.org/W2183173055","https://openalex.org/W2195526672","https://openalex.org/W2195648581","https://openalex.org/W2197070460","https://openalex.org/W2203820337","https://openalex.org/W2248637620","https://openalex.org/W2252594102","https://openalex.org/W2262939758","https://openalex.org/W2266423547","https://openalex.org/W2279743762","https://openalex.org/W2287868935","https://openalex.org/W2289610536","https://openalex.org/W2293548578","https://openalex.org/W2294953407","https://openalex.org/W2312656339","https://openalex.org/W2315673817","https://openalex.org/W2320866142","https://openalex.org/W2321673926","https://openalex.org/W2351365625","https://openalex.org/W2402731431","https://openalex.org/W2402773308","https://openalex.org/W2407456133","https://openalex.org/W2418006618","https://openalex.org/W2463747153","https://openalex.org/W2596982639","https://openalex.org/W2739999456","https://openalex.org/W2763128392","https://openalex.org/W3121117611","https://openalex.org/W3216528512","https://openalex.org/W4244158828","https://openalex.org/W4244447215","https://openalex.org/W4256689729","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2046666360","https://openalex.org/W1995181927","https://openalex.org/W1978000202","https://openalex.org/W4307966890","https://openalex.org/W2318532368","https://openalex.org/W3119217360","https://openalex.org/W2794551838","https://openalex.org/W2088072135","https://openalex.org/W2312656339","https://openalex.org/W2270962995"],"abstract_inverted_index":{"BACKGROUND:":[0],"A":[1,158],"number":[2,289],"of":[3,21,42,56,87,109,153,224,266,277,290,313,345],"membrane-anchored":[4],"proteins":[5,23,57,81,98,168,193,201,282,292],"are":[6,46,316,322],"known":[7],"to":[8,27,48,66,122,148,164,172,215,248],"be":[9,101,173],"released":[10,53,176],"from":[11],"cell":[12,39],"surface":[13],"via":[14],"ectodomain":[15],"shedding.":[16],"The":[17,298,342],"cleavage":[18,211],"and":[19,32,51,89,119,227,283,309,311],"release":[20],"membrane":[22,40,80,156,167,192,200,260,281,291],"has":[24,103],"been":[25,204],"shown":[26],"modulate":[28,59],"various":[29,60],"cellular":[30,307],"processes":[31,308],"disease":[33],"pathologies.":[34],"Numerous":[35],"studies":[36,186],"revealed":[37],"that":[38,71,99,169],"molecules":[41],"diverse":[43],"functional":[44],"groups":[45],"subjected":[47],"proteolytic":[49],"cleavage,":[50],"the":[52,67,75,78,96,107,124,143,154,166,178,222,228,235,253,264,271,275,287,295],"soluble":[54],"form":[55],"may":[58,82,285,332],"signaling":[61],"processes.":[62],"Therefore,":[63],"in":[64,106,177,234,328],"addition":[65],"secreted":[68],"protein":[69,133],"markers":[70,135,303,315,319],"undergo":[72],"secretion":[73],"through":[74],"secretory":[76],"pathway,":[77],"shed":[79,102,134,155,191,199,280,302,340],"comprise":[83],"an":[84],"additional":[85],"resource":[86,336],"noninvasive":[88,111],"accessible":[90],"biomarkers.":[91,112],"In":[92,140,238],"this":[93,141],"context,":[94],"identifying":[95],"membrane-bound":[97,132,301,339],"will":[100],"become":[104],"important":[105],"discovery":[108],"clinically":[110],"Nevertheless,":[113],"a":[114,217,334],"data":[115,152],"repository":[116],"for":[117,131,251,274,293,337],"biological":[118],"clinical":[120],"researchers":[121,250],"review":[123],"shedding":[125,219,225,236,254,296],"information,":[126],"which":[127,197],"is":[128,136,270,347],"experimentally":[129,278],"validated,":[130],"still":[137],"lacking.":[138],"RESULTS:":[139],"study,":[142],"database":[144,273,299],"SheddomeDB":[145,213,247,269,331,346],"was":[146,162,244],"developed":[147],"integrate":[149],"publicly":[150,348],"available":[151,349],"proteins.":[157,261],"comprehensive":[159,218],"literature":[160],"survey":[161],"performed":[163],"collect":[165],"were":[170,194],"verified":[171],"cleaved":[174],"or":[175,206,231,258,325],"supernatant":[179],"by":[180,209],"immunological-based":[181],"validation":[182],"experiments.":[183],"From":[184],"436":[185],"on":[187,256],"shedding,":[188],"401":[189],"validated":[190,207,279,326],"included,":[195],"among":[196],"199":[198],"have":[202],"not":[203,323],"annotated":[205,324],"yet":[208,327],"existing":[210],"databases.":[212,330],"attempted":[214],"provide":[216,286,333],"report,":[220],"including":[221],"regulation":[223],"machinery":[226],"related":[229],"function":[230],"diseases":[232],"involved":[233],"events.":[237],"addition,":[239],"our":[240,267],"published":[241],"tool":[242],"ShedP":[243],"embedded":[245],"into":[246],"support":[249],"predicting":[252],"event":[255],"unknown":[257],"unrecorded":[259],"CONCLUSIONS:":[262],"To":[263],"best":[265],"knowledge,":[268],"first":[272],"identification":[276],"currently":[284],"most":[288],"reviewing":[294],"information.":[297],"included":[300],"associated":[304],"with":[305],"numerous":[306],"diseases,":[310],"some":[312],"these":[314],"potential":[317],"novel":[318],"because":[320],"they":[321],"other":[329],"useful":[335],"discovering":[338],"markers.":[341],"interactive":[343],"web":[344],"at":[350],"http://bal.ym.edu.tw/SheddomeDB/":[351],".":[352]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
