{"id":"https://openalex.org/W2588879384","doi":"https://doi.org/10.1186/s12859-016-1445-3","title":"Generalized box-plot for root growth ensembles","display_name":"Generalized box-plot for root growth ensembles","publication_year":2017,"publication_date":"2017-02-01","ids":{"openalex":"https://openalex.org/W2588879384","doi":"https://doi.org/10.1186/s12859-016-1445-3","mag":"2588879384","pmid":"https://pubmed.ncbi.nlm.nih.gov/28251866"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-1445-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1445-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1445-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1445-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071677995","display_name":"Viktor Vad","orcid":null},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Viktor Vad","raw_affiliation_strings":["TU WIEN, Karlsplatz 13, Vienna, 1040, Austria. vad@cg.tuwien.ac.at","TU WIEN, Karlsplatz 13, Vienna, 1040, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TU WIEN, Karlsplatz 13, Vienna, 1040, Austria. vad@cg.tuwien.ac.at","institution_ids":[]},{"raw_affiliation_string":"TU WIEN, Karlsplatz 13, Vienna, 1040, Austria","institution_ids":["https://openalex.org/I145847075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034278054","display_name":"Douglas Cedrim","orcid":"https://orcid.org/0000-0002-2300-5213"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]},{"id":"https://openalex.org/I177909021","display_name":"Universidade Federal de S\u00e3o Carlos","ror":"https://ror.org/00qdc6m37","country_code":"BR","type":"education","lineage":["https://openalex.org/I177909021"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Douglas Cedrim","raw_affiliation_strings":["ICMC - University of S\u00e3o Paulo, S\u00e3o Carlos, 15260, Brazil","ICMC \u2013 University of S\u00e3o Paulo, S\u00e3o Carlos, 15260, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICMC - University of S\u00e3o Paulo, S\u00e3o Carlos, 15260, Brazil","institution_ids":[]},{"raw_affiliation_string":"ICMC \u2013 University of S\u00e3o Paulo, S\u00e3o Carlos, 15260, Brazil","institution_ids":["https://openalex.org/I177909021","https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082151650","display_name":"Wolfgang Busch","orcid":"https://orcid.org/0000-0003-2042-7290"},"institutions":[{"id":"https://openalex.org/I137696358","display_name":"Gregor Mendel Institute of Molecular Plant Biology","ror":"https://ror.org/05twjp994","country_code":"AT","type":"facility","lineage":["https://openalex.org/I137696358","https://openalex.org/I138211613","https://openalex.org/I4210142901"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Wolfgang Busch","raw_affiliation_strings":["Gregor Mendel Institute of Molecular Plant Biology GmbH, Dr. Bohr-Gasse 3, Vienna, 1030, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gregor Mendel Institute of Molecular Plant Biology GmbH, Dr. Bohr-Gasse 3, Vienna, 1030, Austria","institution_ids":["https://openalex.org/I137696358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041191852","display_name":"Peter Filzmoser","orcid":"https://orcid.org/0000-0002-8014-4682"},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Peter Filzmoser","raw_affiliation_strings":["TU WIEN, Karlsplatz 13, Vienna, 1040, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TU WIEN, Karlsplatz 13, Vienna, 1040, Austria","institution_ids":["https://openalex.org/I145847075"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022294742","display_name":"Ivan Viola","orcid":"https://orcid.org/0000-0003-4248-6574"},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Ivan Viola","raw_affiliation_strings":["TU WIEN, Karlsplatz 13, Vienna, 1040, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TU WIEN, Karlsplatz 13, Vienna, 1040, Austria","institution_ids":["https://openalex.org/I145847075"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5071677995"],"corresponding_institution_ids":["https://openalex.org/I145847075"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.0261,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.89069035,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"18","issue":"S2","first_page":"65","last_page":"65"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.8130999803543091,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.8130999803543091,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.026200000196695328,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.009800000116229057,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plot","display_name":"Plot (graphics)","score":0.6263949275016785},{"id":"https://openalex.org/keywords/box-plot","display_name":"Box plot","score":0.47151291370391846},{"id":"https://openalex.org/keywords/root","display_name":"Root (linguistics)","score":0.4585513770580292},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3565390110015869},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3318742513656616},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3304184675216675},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3241785764694214},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3091685175895691},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.0857083797454834}],"concepts":[{"id":"https://openalex.org/C167651023","wikidata":"https://www.wikidata.org/wiki/Q1474611","display_name":"Plot (graphics)","level":2,"score":0.6263949275016785},{"id":"https://openalex.org/C92560755","wikidata":"https://www.wikidata.org/wiki/Q895726","display_name":"Box plot","level":2,"score":0.47151291370391846},{"id":"https://openalex.org/C171078966","wikidata":"https://www.wikidata.org/wiki/Q111029","display_name":"Root (linguistics)","level":2,"score":0.4585513770580292},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3565390110015869},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3318742513656616},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3304184675216675},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3241785764694214},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3091685175895691},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0857083797454834},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D005069","descriptor_name":"Evaluation Studies as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005069","descriptor_name":"Evaluation Studies as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005069","descriptor_name":"Evaluation Studies as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018517","descriptor_name":"Plant Roots","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D018517","descriptor_name":"Plant Roots","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D018517","descriptor_name":"Plant Roots","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-016-1445-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1445-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1445-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28251866","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28251866","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5333180","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5333180","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-1445-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1445-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1445-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8424453579","display_name":"Visual Computing: Illustrative Visualization","funder_award_id":"VRG11-010","funder_id":"https://openalex.org/F4320321003","funder_display_name":"Vienna Science and Technology Fund"}],"funders":[{"id":"https://openalex.org/F4320321003","display_name":"Vienna Science and Technology Fund","ror":"https://ror.org/01f9mc681"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2588879384.pdf","grobid_xml":"https://content.openalex.org/works/W2588879384.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W300909183","https://openalex.org/W434012021","https://openalex.org/W1495929194","https://openalex.org/W1501405168","https://openalex.org/W1548879090","https://openalex.org/W1563039318","https://openalex.org/W1601042374","https://openalex.org/W1969153223","https://openalex.org/W1982271317","https://openalex.org/W1986797692","https://openalex.org/W2030444684","https://openalex.org/W2034923252","https://openalex.org/W2040324983","https://openalex.org/W2043872985","https://openalex.org/W2053946000","https://openalex.org/W2057890665","https://openalex.org/W2098115340","https://openalex.org/W2116122104","https://openalex.org/W2127775323","https://openalex.org/W2137327285","https://openalex.org/W2156204145","https://openalex.org/W2163834574","https://openalex.org/W2169109014","https://openalex.org/W2307504630","https://openalex.org/W2500371699","https://openalex.org/W4205649593","https://openalex.org/W4252466037","https://openalex.org/W4256671197"],"related_works":["https://openalex.org/W3214510223","https://openalex.org/W2054804828","https://openalex.org/W4232479953","https://openalex.org/W2263439615","https://openalex.org/W2042204882","https://openalex.org/W3203486415","https://openalex.org/W2139973024","https://openalex.org/W2750001763","https://openalex.org/W2898617518","https://openalex.org/W1994774411"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1,51,83],"the":[2,18,39,71,99,126,132,143,152,156,164],"field":[3],"of":[4,24,42,58,80,101,108,142],"root":[5,14,25,48,59,63,102,133],"biology":[6],"there":[7],"has":[8],"been":[9],"a":[10,77,90,138],"remarkable":[11],"progress":[12],"in":[13],"phenotyping,":[15],"which":[16,159],"is":[17,28],"efficient":[19],"acquisition":[20],"and":[21,37,44],"quantitative":[22],"description":[23],"morphology.":[26],"What":[27],"currently":[29],"missing":[30],"are":[31,148],"means":[32],"to":[33,85,93,117,124,150],"efficiently":[34],"explore,":[35],"exchange":[36],"present":[38,55,125],"massive":[40],"amount":[41],"acquired,":[43],"often":[45],"time":[46],"dependent":[47],"phenotypes.":[49],"RESULTS:":[50],"this":[52],"work,":[53],"we":[54,88,147],"visual":[56,91],"summaries":[57],"ensembles":[60],"by":[61,163],"aggregating":[62],"images":[64],"with":[65,76,98],"identical":[66],"genetic":[67],"characteristics.":[68],"We":[69],"use":[70],"generalized":[72],"box":[73],"plot":[74],"concept":[75],"new":[78,106,144],"formulation":[79,107,146],"data":[81,109],"depth.":[82],"addition":[84],"spatial":[86],"distributions,":[87],"created":[89],"representation":[92],"encode":[94],"temporal":[95],"distributions":[96],"associated":[97],"development":[100],"individuals.":[103],"CONCLUSIONS:":[104],"The":[105],"depth":[110],"allows":[111,122],"for":[112,155],"much":[113],"faster":[114],"implementation":[115],"close":[116],"interactive":[118],"frame":[119],"rates.":[120],"This":[121],"us":[123],"statistics":[127],"from":[128],"bootstrapping":[129],"that":[130],"characterize":[131],"sample":[134],"set":[135],"quality.":[136],"As":[137],"positive":[139],"side":[140],"effect":[141],"data-depth":[145],"able":[149],"define":[151],"geometric":[153],"median":[154],"curve":[157],"ensemble,":[158],"was":[160],"well":[161],"received":[162],"domain":[165],"experts.":[166]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
