{"id":"https://openalex.org/W2574349495","doi":"https://doi.org/10.1186/s12859-016-1438-2","title":"iGC\u2014an integrated analysis package of gene expression and copy number alteration","display_name":"iGC\u2014an integrated analysis package of gene expression and copy number alteration","publication_year":2017,"publication_date":"2017-01-14","ids":{"openalex":"https://openalex.org/W2574349495","doi":"https://doi.org/10.1186/s12859-016-1438-2","mag":"2574349495","pmid":"https://pubmed.ncbi.nlm.nih.gov/28088185"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-1438-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1438-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1438-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1438-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052628562","display_name":"Yi-Pin Lai","orcid":"https://orcid.org/0000-0002-6550-8329"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yi-Pin Lai","raw_affiliation_strings":["Bioinformatics and Biostatistics Core, Center of Genomic Medicine, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Biostatistics Core, Center of Genomic Medicine, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050096706","display_name":"Liang-Bo Wang","orcid":"https://orcid.org/0000-0001-6977-9348"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Liang-Bo Wang","raw_affiliation_strings":["Bioinformatics and Biostatistics Core, Center of Genomic Medicine, National Taiwan University, Taipei, Taiwan","Graduate Institute of Biomedical Electronics and Bioinformatics, Department of Electrical Engineering, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Biostatistics Core, Center of Genomic Medicine, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Graduate Institute of Biomedical Electronics and Bioinformatics, Department of Electrical Engineering, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084556197","display_name":"Weian Wang","orcid":"https://orcid.org/0000-0002-8995-6927"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Wei-An Wang","raw_affiliation_strings":["Bioinformatics and Biostatistics Core, Center of Genomic Medicine, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Biostatistics Core, Center of Genomic Medicine, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069812755","display_name":"Liang\u2010Chuan Lai","orcid":"https://orcid.org/0000-0002-3913-5338"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Liang-Chuan Lai","raw_affiliation_strings":["Bioinformatics and Biostatistics Core, Center of Genomic Medicine, National Taiwan University, Taipei, Taiwan","Graduate Institute of Physiology, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Biostatistics Core, Center of Genomic Medicine, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Graduate Institute of Physiology, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008173365","display_name":"Mong\u2010Hsun Tsai","orcid":"https://orcid.org/0000-0001-8777-5818"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Mong-Hsun Tsai","raw_affiliation_strings":["Bioinformatics and Biostatistics Core, Center of Genomic Medicine, National Taiwan University, Taipei, Taiwan","Institute of Biotechnology, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Biostatistics Core, Center of Genomic Medicine, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Institute of Biotechnology, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025739002","display_name":"Tzu\u2010Pin Lu","orcid":"https://orcid.org/0000-0003-3697-0386"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Tzu-Pin Lu","raw_affiliation_strings":["Department of Public Health, Institute of Epidemiology and Preventive Medicine, National Taiwan University, Taipei, Taiwan. tplu@ntu.edu.tw","Department of Public Health, Institute of Epidemiology and Preventive Medicine, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Public Health, Institute of Epidemiology and Preventive Medicine, National Taiwan University, Taipei, Taiwan. tplu@ntu.edu.tw","institution_ids":[]},{"raw_affiliation_string":"Department of Public Health, Institute of Epidemiology and Preventive Medicine, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062893898","display_name":"Eric Y. Chuang","orcid":"https://orcid.org/0000-0003-2530-0096"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Eric Y. Chuang","raw_affiliation_strings":["Bioinformatics and Biostatistics Core, Center of Genomic Medicine, National Taiwan University, Taipei, Taiwan. chuangey@ntu.edu.tw","Graduate Institute of Biomedical Electronics and Bioinformatics, Department of Electrical Engineering, National Taiwan University, Taipei, Taiwan. chuangey@ntu.edu.tw","Graduate Institute of Biomedical Electronics and Bioinformatics, Department of Electrical Engineering, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Biostatistics Core, Center of Genomic Medicine, National Taiwan University, Taipei, Taiwan. chuangey@ntu.edu.tw","institution_ids":[]},{"raw_affiliation_string":"Graduate Institute of Biomedical Electronics and Bioinformatics, Department of Electrical Engineering, National Taiwan University, Taipei, Taiwan. chuangey@ntu.edu.tw","institution_ids":[]},{"raw_affiliation_string":"Graduate Institute of Biomedical Electronics and Bioinformatics, Department of Electrical Engineering, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5025739002"],"corresponding_institution_ids":["https://openalex.org/I16733864"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.185,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.8766318,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"18","issue":"1","first_page":"35","last_page":"35"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.833899974822998,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.833899974822998,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.08020000159740448,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11677","display_name":"Congenital heart defects research","score":0.016100000590085983,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/venn-diagram","display_name":"Venn diagram","score":0.8911243677139282},{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.8646764755249023},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6470955610275269},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.6289212703704834},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5741270780563354},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.5405818819999695},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5138302445411682},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4653027653694153},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.4519753158092499},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4428313374519348},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.42956677079200745},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.373653769493103},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3721769154071808},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3199363052845001},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.3119544982910156},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14206406474113464},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09268400073051453}],"concepts":[{"id":"https://openalex.org/C55508974","wikidata":"https://www.wikidata.org/wiki/Q190763","display_name":"Venn diagram","level":2,"score":0.8911243677139282},{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.8646764755249023},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.6470955610275269},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6289212703704834},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5741270780563354},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.5405818819999695},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5138302445411682},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4653027653694153},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.4519753158092499},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4428313374519348},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.42956677079200745},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.373653769493103},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3721769154071808},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3199363052845001},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3119544982910156},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14206406474113464},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09268400073051453},{"id":"https://openalex.org/C145420912","wikidata":"https://www.wikidata.org/wiki/Q853077","display_name":"Mathematics education","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-016-1438-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1438-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1438-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28088185","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28088185","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:4134840","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5237550","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-1438-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1438-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1438-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G2029006545","display_name":null,"funder_award_id":"FB0027","funder_id":"https://openalex.org/F4320323900","funder_display_name":"National Taiwan University"},{"id":"https://openalex.org/G3226902680","display_name":null,"funder_award_id":"104R8400","funder_id":"https://openalex.org/F4320323900","funder_display_name":"National Taiwan University"}],"funders":[{"id":"https://openalex.org/F4320323900","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2574349495.pdf","grobid_xml":"https://content.openalex.org/works/W2574349495.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W238668910","https://openalex.org/W1573937463","https://openalex.org/W1973025982","https://openalex.org/W1993093995","https://openalex.org/W1999388825","https://openalex.org/W2006559366","https://openalex.org/W2014606320","https://openalex.org/W2020541351","https://openalex.org/W2034232365","https://openalex.org/W2044702943","https://openalex.org/W2046009884","https://openalex.org/W2046233258","https://openalex.org/W2048862998","https://openalex.org/W2056975833","https://openalex.org/W2071688995","https://openalex.org/W2073433320","https://openalex.org/W2076944961","https://openalex.org/W2077560413","https://openalex.org/W2080762011","https://openalex.org/W2096283457","https://openalex.org/W2104659356","https://openalex.org/W2112602230","https://openalex.org/W2113570388","https://openalex.org/W2125149709","https://openalex.org/W2130410032","https://openalex.org/W2136661588","https://openalex.org/W2138755755","https://openalex.org/W2148828399","https://openalex.org/W2154361640","https://openalex.org/W2156809732","https://openalex.org/W2157582398","https://openalex.org/W2158154431","https://openalex.org/W2158485828","https://openalex.org/W2161006854","https://openalex.org/W2163809592","https://openalex.org/W2168841715","https://openalex.org/W2261518868","https://openalex.org/W2278971727","https://openalex.org/W2560367415"],"related_works":["https://openalex.org/W2982252354","https://openalex.org/W2728564446","https://openalex.org/W3045904767","https://openalex.org/W2161868542","https://openalex.org/W2140163842","https://openalex.org/W3156537409","https://openalex.org/W2747931568","https://openalex.org/W2921090651","https://openalex.org/W2133055377","https://openalex.org/W2287365612"],"abstract_inverted_index":{"BACKGROUND:":[0],"With":[1],"the":[2,46,73,114,119,148,152],"advancement":[3],"in":[4,72,140],"high-throughput":[5],"technologies,":[6],"researchers":[7],"can":[8,92,180],"simultaneously":[9,171],"investigate":[10],"gene":[11,67,130],"expression":[12,68,131],"and":[13,35,50,70,90,133,164,176,186,194],"copy":[14,134],"number":[15],"alteration":[16],"(CNA)":[17],"data":[18,33],"from":[19],"individual":[20],"patients":[21],"at":[22,199],"a":[23,141],"lower":[24],"cost.":[25],"Traditional":[26],"analysis":[27,106],"methods":[28],"analyze":[29,65],"each":[30],"type":[31],"of":[32,107,184],"individually":[34],"integrate":[36],"their":[37,94,129],"results":[38,47],"using":[39],"Venn":[40,149],"diagrams.":[41],"Challenges":[42],"arise,":[43],"however,":[44],"when":[45],"are":[48,88,196],"irreproducible":[49],"inconsistent":[51],"across":[52],"multiple":[53],"platforms.":[54],"To":[55],"address":[56],"these":[57],"issues,":[58],"one":[59],"possible":[60],"approach":[61],"is":[62,162],"to":[63],"concurrently":[64],"both":[66,173],"profiling":[69],"CNAs":[71],"same":[74],"individual.":[75],"RESULTS:":[76],"We":[77],"have":[78],"developed":[79],"an":[80],"open-source":[81],"R/Bioconductor":[82],"package":[83,121,154,161],"(iGC).":[84],"Multiple":[85],"input":[86],"formats":[87],"supported":[89],"users":[91],"define":[93],"own":[95],"criteria":[96],"for":[97,166],"identifying":[98,167],"differentially":[99],"expressed":[100],"genes":[101,116,138],"driven":[102],"by":[103,118],"CNAs.":[104],"The":[105,159,189],"two":[108],"real":[109],"microarray":[110],"datasets":[111],"demonstrated":[112],"that":[113],"CNA-driven":[115,168],"identified":[117],"iGC":[120,153,160,190],"showed":[122,155],"significantly":[123],"higher":[124],"Pearson":[125],"correlation":[126],"coefficients":[127],"with":[128,144,147],"levels":[132],"numbers":[135],"than":[136],"those":[137],"located":[139],"genomic":[142,175],"region":[143],"CNA.":[145],"Compared":[146],"diagram":[150],"approach,":[151],"better":[156,182],"performance.":[157],"CONCLUSION:":[158],"effective":[163],"useful":[165],"genes.":[169],"By":[170],"considering":[172],"comparative":[174],"transcriptomic":[177],"data,":[178],"it":[179],"provide":[181],"understanding":[183],"biological":[185],"medical":[187],"questions.":[188],"package's":[191],"source":[192],"code":[193],"manual":[195],"freely":[197],"available":[198],"https://www.bioconductor.org/packages/release/bioc/html/iGC.html":[200],".":[201]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":2}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
