{"id":"https://openalex.org/W2576785575","doi":"https://doi.org/10.1186/s12859-016-1428-4","title":"An internet-based bioinformatics toolkit for plant biosecurity diagnosis and surveillance of viruses and viroids","display_name":"An internet-based bioinformatics toolkit for plant biosecurity diagnosis and surveillance of viruses and viroids","publication_year":2017,"publication_date":"2017-01-11","ids":{"openalex":"https://openalex.org/W2576785575","doi":"https://doi.org/10.1186/s12859-016-1428-4","mag":"2576785575","pmid":"https://pubmed.ncbi.nlm.nih.gov/28077064"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-1428-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1428-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1428-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1428-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042291484","display_name":"Roberto A. Barrero","orcid":"https://orcid.org/0000-0002-7735-665X"},"institutions":[{"id":"https://openalex.org/I176790772","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34","country_code":"AU","type":"education","lineage":["https://openalex.org/I176790772"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Roberto A. Barrero","raw_affiliation_strings":["Centre for Comparative Genomics, Murdoch University, Murdoch, WA, 6150, Australia. rbarrero@ccg.murdoch.edu.au","Centre for Comparative Genomics, Murdoch University, Murdoch, Australia"],"affiliations":[{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch University, Murdoch, WA, 6150, Australia. rbarrero@ccg.murdoch.edu.au","institution_ids":[]},{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch University, Murdoch, Australia","institution_ids":["https://openalex.org/I176790772"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062472299","display_name":"Kathryn Napier","orcid":"https://orcid.org/0000-0003-1202-7238"},"institutions":[{"id":"https://openalex.org/I4210107077","display_name":"Plant Biosecurity Cooperative Research Centre","ror":"https://ror.org/01nw09h32","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210107077"]},{"id":"https://openalex.org/I176790772","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34","country_code":"AU","type":"education","lineage":["https://openalex.org/I176790772"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Kathryn R. Napier","raw_affiliation_strings":["Centre for Comparative Genomics, Murdoch University, Murdoch, WA, 6150, Australia","Plant Biosecurity Cooperative Research Centre, Canberra, ACT, 2617, Australia","Plant Biosecurity Cooperative Research Centre, Canberra, Australia","Centre for Comparative Genomics, Murdoch University, Murdoch, Australia"],"affiliations":[{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch University, Murdoch, WA, 6150, Australia","institution_ids":["https://openalex.org/I176790772"]},{"raw_affiliation_string":"Plant Biosecurity Cooperative Research Centre, Canberra, ACT, 2617, Australia","institution_ids":["https://openalex.org/I4210107077"]},{"raw_affiliation_string":"Plant Biosecurity Cooperative Research Centre, Canberra, Australia","institution_ids":["https://openalex.org/I4210107077"]},{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch University, Murdoch, Australia","institution_ids":["https://openalex.org/I176790772"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057297163","display_name":"J. H. Cunnington","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"James Cunnington","raw_affiliation_strings":["Department of Agriculture and Water Resources, Mickleham, VIC, 3064, Australia","Department of Agriculture and Water Resources, Mickleham, Australia"],"affiliations":[{"raw_affiliation_string":"Department of Agriculture and Water Resources, Mickleham, VIC, 3064, Australia","institution_ids":[]},{"raw_affiliation_string":"Department of Agriculture and Water Resources, Mickleham, Australia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039430983","display_name":"Lia W. Liefting","orcid":null},"institutions":[{"id":"https://openalex.org/I262074209","display_name":"Ministry for Primary Industries","ror":"https://ror.org/055y4y749","country_code":"NZ","type":"government","lineage":["https://openalex.org/I262074209"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Lia Liefting","raw_affiliation_strings":["Ministry for Primary Industries, Wellington, New Zealand"],"affiliations":[{"raw_affiliation_string":"Ministry for Primary Industries, Wellington, New Zealand","institution_ids":["https://openalex.org/I262074209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031119752","display_name":"Sandi Keenan","orcid":null},"institutions":[{"id":"https://openalex.org/I1320288732","display_name":"Plant & Food Research","ror":"https://ror.org/02bchch95","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I1320288732","https://openalex.org/I4405260297"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Sandi Keenan","raw_affiliation_strings":["The New Zealand Institute for Plant Food and Research Limited, Better Border Biosecurity, Lincoln, 7608, New Zealand","The New Zealand Institute for Plant Food and Research Limited, Better Border Biosecurity, Lincoln, New Zealand"],"affiliations":[{"raw_affiliation_string":"The New Zealand Institute for Plant Food and Research Limited, Better Border Biosecurity, Lincoln, 7608, New Zealand","institution_ids":["https://openalex.org/I1320288732"]},{"raw_affiliation_string":"The New Zealand Institute for Plant Food and Research Limited, Better Border Biosecurity, Lincoln, New Zealand","institution_ids":["https://openalex.org/I1320288732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060365854","display_name":"Rebekah A. Frampton","orcid":"https://orcid.org/0000-0001-5283-2878"},"institutions":[{"id":"https://openalex.org/I1320288732","display_name":"Plant & Food Research","ror":"https://ror.org/02bchch95","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I1320288732","https://openalex.org/I4405260297"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Rebekah A. Frampton","raw_affiliation_strings":["The New Zealand Institute for Plant Food and Research Limited, Better Border Biosecurity, Lincoln, 7608, New Zealand","The New Zealand Institute for Plant Food and Research Limited, Better Border Biosecurity, Lincoln, New Zealand"],"affiliations":[{"raw_affiliation_string":"The New Zealand Institute for Plant Food and Research Limited, Better Border Biosecurity, Lincoln, 7608, New Zealand","institution_ids":["https://openalex.org/I1320288732"]},{"raw_affiliation_string":"The New Zealand Institute for Plant Food and Research Limited, Better Border Biosecurity, Lincoln, New Zealand","institution_ids":["https://openalex.org/I1320288732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010111965","display_name":"Tam\u00e1s Szab\u00f3","orcid":"https://orcid.org/0000-0001-9422-8142"},"institutions":[{"id":"https://openalex.org/I176790772","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34","country_code":"AU","type":"education","lineage":["https://openalex.org/I176790772"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Tamas Szabo","raw_affiliation_strings":["Centre for Comparative Genomics, Murdoch University, Murdoch, WA, 6150, Australia","Centre for Comparative Genomics, Murdoch University, Murdoch, Australia"],"affiliations":[{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch University, Murdoch, WA, 6150, Australia","institution_ids":["https://openalex.org/I176790772"]},{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch University, Murdoch, Australia","institution_ids":["https://openalex.org/I176790772"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046101535","display_name":"Simon Bulman","orcid":"https://orcid.org/0000-0003-2320-5511"},"institutions":[{"id":"https://openalex.org/I1320288732","display_name":"Plant & Food Research","ror":"https://ror.org/02bchch95","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I1320288732","https://openalex.org/I4405260297"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Simon Bulman","raw_affiliation_strings":["The New Zealand Institute for Plant Food and Research Limited, Better Border Biosecurity, Lincoln, 7608, New Zealand","The New Zealand Institute for Plant Food and Research Limited, Better Border Biosecurity, Lincoln, New Zealand"],"affiliations":[{"raw_affiliation_string":"The New Zealand Institute for Plant Food and Research Limited, Better Border Biosecurity, Lincoln, 7608, New Zealand","institution_ids":["https://openalex.org/I1320288732"]},{"raw_affiliation_string":"The New Zealand Institute for Plant Food and Research Limited, Better Border Biosecurity, Lincoln, New Zealand","institution_ids":["https://openalex.org/I1320288732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042391054","display_name":"Adam Hunter","orcid":"https://orcid.org/0000-0002-9458-606X"},"institutions":[{"id":"https://openalex.org/I176790772","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34","country_code":"AU","type":"education","lineage":["https://openalex.org/I176790772"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Adam Hunter","raw_affiliation_strings":["Centre for Comparative Genomics, Murdoch University, Murdoch, WA, 6150, Australia","Centre for Comparative Genomics, Murdoch University, Murdoch, Australia"],"affiliations":[{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch University, Murdoch, WA, 6150, Australia","institution_ids":["https://openalex.org/I176790772"]},{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch University, Murdoch, Australia","institution_ids":["https://openalex.org/I176790772"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082999458","display_name":"L. I. Ward","orcid":null},"institutions":[{"id":"https://openalex.org/I262074209","display_name":"Ministry for Primary Industries","ror":"https://ror.org/055y4y749","country_code":"NZ","type":"government","lineage":["https://openalex.org/I262074209"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Lisa Ward","raw_affiliation_strings":["Ministry for Primary Industries, Wellington, New Zealand"],"affiliations":[{"raw_affiliation_string":"Ministry for Primary Industries, Wellington, New Zealand","institution_ids":["https://openalex.org/I262074209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011162379","display_name":"Mark Whattam","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mark Whattam","raw_affiliation_strings":["Department of Agriculture and Water Resources, Mickleham, VIC, 3064, Australia","Department of Agriculture and Water Resources, Mickleham, Australia"],"affiliations":[{"raw_affiliation_string":"Department of Agriculture and Water Resources, Mickleham, VIC, 3064, Australia","institution_ids":[]},{"raw_affiliation_string":"Department of Agriculture and Water Resources, Mickleham, Australia","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044207304","display_name":"M. Bellgard","orcid":"https://orcid.org/0000-0002-6303-9469"},"institutions":[{"id":"https://openalex.org/I176790772","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34","country_code":"AU","type":"education","lineage":["https://openalex.org/I176790772"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Matthew I. Bellgard","raw_affiliation_strings":["Centre for Comparative Genomics, Murdoch University, Murdoch, WA, 6150, Australia. mbellgard@ccg.murdoch.edu.au","Centre for Comparative Genomics, Murdoch University, Murdoch, Australia"],"affiliations":[{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch University, Murdoch, WA, 6150, Australia. mbellgard@ccg.murdoch.edu.au","institution_ids":[]},{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch University, Murdoch, Australia","institution_ids":["https://openalex.org/I176790772"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5042291484","https://openalex.org/A5044207304"],"corresponding_institution_ids":["https://openalex.org/I176790772"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":13.6926,"has_fulltext":true,"cited_by_count":53,"citation_normalized_percentile":{"value":0.98374534,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"18","issue":"1","first_page":"26","last_page":"26"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13220","display_name":"Plant and Fungal Interactions Research","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7925324440002441},{"id":"https://openalex.org/keywords/small-rna","display_name":"Small RNA","score":0.5671782493591309},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.5456148386001587},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5413612723350525},{"id":"https://openalex.org/keywords/dicer","display_name":"Dicer","score":0.502638578414917},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4851315915584564},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.4305953085422516},{"id":"https://openalex.org/keywords/plant-virus","display_name":"Plant virus","score":0.41458773612976074},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.38606882095336914},{"id":"https://openalex.org/keywords/small-interfering-rna","display_name":"Small interfering RNA","score":0.3611537218093872},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.28170347213745117},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1892315149307251},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.09359031915664673},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.07911041378974915}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7925324440002441},{"id":"https://openalex.org/C2779341050","wikidata":"https://www.wikidata.org/wiki/Q24287527","display_name":"Small RNA","level":4,"score":0.5671782493591309},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.5456148386001587},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5413612723350525},{"id":"https://openalex.org/C2779867133","wikidata":"https://www.wikidata.org/wiki/Q21111297","display_name":"Dicer","level":5,"score":0.502638578414917},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4851315915584564},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.4305953085422516},{"id":"https://openalex.org/C109110057","wikidata":"https://www.wikidata.org/wiki/Q1495434","display_name":"Plant virus","level":3,"score":0.41458773612976074},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.38606882095336914},{"id":"https://openalex.org/C22615655","wikidata":"https://www.wikidata.org/wiki/Q203221","display_name":"Small interfering RNA","level":4,"score":0.3611537218093872},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.28170347213745117},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1892315149307251},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.09359031915664673},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.07911041378974915}],"mesh":[{"descriptor_ui":"D001315","descriptor_name":"Australia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001315","descriptor_name":"Australia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001315","descriptor_name":"Australia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009520","descriptor_name":"New Zealand","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009520","descriptor_name":"New Zealand","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009520","descriptor_name":"New Zealand","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D010942","descriptor_name":"Plant Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010942","descriptor_name":"Plant Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010942","descriptor_name":"Plant Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012367","descriptor_name":"RNA, Viral","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012367","descriptor_name":"RNA, Viral","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012367","descriptor_name":"RNA, Viral","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D014772","descriptor_name":"Viroids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014772","descriptor_name":"Viroids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014772","descriptor_name":"Viroids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-016-1428-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1428-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1428-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28077064","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28077064","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:eprints.qut.edu.au:125430","is_oa":true,"landing_page_url":null,"pdf_url":"https://eprints.qut.edu.au/125430/1/125430.pdf","source":{"id":"https://openalex.org/S4306402607","display_name":"QUT ePrints (Queensland University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I160993911","host_organization_name":"Queensland University of Technology","host_organization_lineage":["https://openalex.org/I160993911"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Contribution to Journal"},{"id":"pmh:oai:researchrepository.murdoch.edu.au:35165","is_oa":false,"landing_page_url":"http://researchrepository.murdoch.edu.au/id/eprint/35165/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400274","display_name":"Murdoch Research Repository (Murdoch University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I176790772","host_organization_name":"Murdoch University","host_organization_lineage":["https://openalex.org/I176790772"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"  Barrero, R.A. &lt;http://researchrepository.murdoch.edu.au/view/author/Barrero, Roberto.html&gt;, Napier, K.R. &lt;http://researchrepository.murdoch.edu.au/view/author/Napier, Kathryn.html&gt;, Cunnington, J., Liefting, L., Keenan, S., Frampton, R.A., Szabo, T. &lt;http://researchrepository.murdoch.edu.au/view/author/Szabo, Tamas.html&gt;, Bulman, S., Hunter, A. &lt;http://researchrepository.murdoch.edu.au/view/author/Hunter, Adam.html&gt;, Ward, L., Whattam, M. and Bellgard, M.I. &lt;http://researchrepository.murdoch.edu.au/view/author/Bellgard, Matthew.html&gt;   (2017)  An internet-based bioinformatics toolkit for plant biosecurity diagnosis and surveillance of viruses and viroids.   BMC Bioinformatics, 18  (1).    ","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5225587","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5225587","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-1428-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1428-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1428-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.46000000834465027,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320989","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34"},{"id":"https://openalex.org/F4320325648","display_name":"Department of Agriculture and Water Resources, Australian Government","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2576785575.pdf","grobid_xml":"https://content.openalex.org/works/W2576785575.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W52128721","https://openalex.org/W600164049","https://openalex.org/W865408444","https://openalex.org/W1965041205","https://openalex.org/W1966822396","https://openalex.org/W1968458420","https://openalex.org/W1969522526","https://openalex.org/W1992157421","https://openalex.org/W2008971253","https://openalex.org/W2009608493","https://openalex.org/W2022495019","https://openalex.org/W2034624715","https://openalex.org/W2043566779","https://openalex.org/W2049455664","https://openalex.org/W2055043387","https://openalex.org/W2057763742","https://openalex.org/W2063131041","https://openalex.org/W2067279194","https://openalex.org/W2070571588","https://openalex.org/W2077769539","https://openalex.org/W2107772251","https://openalex.org/W2108234281","https://openalex.org/W2108488720","https://openalex.org/W2112921486","https://openalex.org/W2120902911","https://openalex.org/W2124985265","https://openalex.org/W2136482257","https://openalex.org/W2137390232","https://openalex.org/W2138193360","https://openalex.org/W2154241726","https://openalex.org/W2158381555","https://openalex.org/W2159746639","https://openalex.org/W2160969485","https://openalex.org/W2161546116","https://openalex.org/W2166265186","https://openalex.org/W2170551349","https://openalex.org/W2195136000","https://openalex.org/W2212884323","https://openalex.org/W2473788936"],"related_works":["https://openalex.org/W2094395550","https://openalex.org/W2020086002","https://openalex.org/W2081384318","https://openalex.org/W4200413262","https://openalex.org/W2020839898","https://openalex.org/W2059083962","https://openalex.org/W1979844428","https://openalex.org/W2343687308","https://openalex.org/W2080459765","https://openalex.org/W829871130"],"abstract_inverted_index":{"We":[0,34],"have":[1],"implemented":[2],"an":[3],"automated":[4],"viral":[5,32,45],"surveillance":[6,42],"and":[7,16,26,43,50],"diagnosis":[8,44],"(VSD)":[9],"bioinformatics":[10],"toolkit":[11,22],"that":[12,36],"produces":[13],"improved":[14],"viruses":[15],"viroid":[17],"sequence":[18],"assemblies.":[19],"The":[20],"VSD":[21],"provides":[23],"several":[24],"optimised":[25],"reusable":[27],"workflows":[28],"applicable":[29],"to":[30],"distinct":[31],"pathogens.":[33],"envisage":[35],"this":[37],"resource":[38],"will":[39],"facilitate":[40],"the":[41],"pathogens":[46],"in":[47],"plants,":[48],"insects":[49],"invertebrates.":[51]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":6}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
