{"id":"https://openalex.org/W2565780679","doi":"https://doi.org/10.1186/s12859-016-1416-8","title":"PERGOLA: fast and deterministic linkage mapping of polyploids","display_name":"PERGOLA: fast and deterministic linkage mapping of polyploids","publication_year":2017,"publication_date":"2017-01-04","ids":{"openalex":"https://openalex.org/W2565780679","doi":"https://doi.org/10.1186/s12859-016-1416-8","mag":"2565780679","pmid":"https://pubmed.ncbi.nlm.nih.gov/28049428"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-1416-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1416-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1416-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1416-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061201059","display_name":"Fabian Grandke","orcid":"https://orcid.org/0000-0003-2065-6202"},"institutions":[{"id":"https://openalex.org/I292141241","display_name":"Munich School of Philosophy","ror":"https://ror.org/02kqy4228","country_code":"DE","type":"education","lineage":["https://openalex.org/I292141241"]},{"id":"https://openalex.org/I4210090479","display_name":"Graduate School Experimental Plant Sciences","ror":"https://ror.org/00dztkz65","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210090479"]},{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE","NL"],"is_corresponding":true,"raw_author_name":"Fabian Grandke","raw_affiliation_strings":["Fakult\u00e4t f\u00fcr Biologie, University of Munich (LMU), Munich, Germany. grandke@biologie.uni-muenchen.de","Genetwister Technologies B.V., Wageningen, The Netherlands. grandke@biologie.uni-muenchen.de","Genetwister Technologies B.V., Wageningen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Fakult\u00e4t f\u00fcr Biologie, University of Munich (LMU), Munich, Germany. grandke@biologie.uni-muenchen.de","institution_ids":["https://openalex.org/I8204097","https://openalex.org/I292141241"]},{"raw_affiliation_string":"Genetwister Technologies B.V., Wageningen, The Netherlands. grandke@biologie.uni-muenchen.de","institution_ids":["https://openalex.org/I4210090479"]},{"raw_affiliation_string":"Genetwister Technologies B.V., Wageningen, The Netherlands","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005398968","display_name":"Soumya Ranganathan","orcid":null},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Soumya Ranganathan","raw_affiliation_strings":["Fakult\u00e4t f\u00fcr Biologie, University of Munich (LMU), Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Fakult\u00e4t f\u00fcr Biologie, University of Munich (LMU), Munich, Germany","institution_ids":["https://openalex.org/I8204097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028999193","display_name":"Nikkie van Bers","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nikkie van Bers","raw_affiliation_strings":["Genetwister Technologies B.V., Wageningen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Genetwister Technologies B.V., Wageningen, The Netherlands","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008235153","display_name":"Jorn R. de Haan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jorn R. de Haan","raw_affiliation_strings":["Genetwister Technologies B.V., Wageningen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Genetwister Technologies B.V., Wageningen, The Netherlands","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038468188","display_name":"Dirk Metzler","orcid":"https://orcid.org/0000-0003-1027-135X"},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dirk Metzler","raw_affiliation_strings":["Fakult\u00e4t f\u00fcr Biologie, University of Munich (LMU), Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Fakult\u00e4t f\u00fcr Biologie, University of Munich (LMU), Munich, Germany","institution_ids":["https://openalex.org/I8204097"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5061201059"],"corresponding_institution_ids":["https://openalex.org/I292141241","https://openalex.org/I4210090479","https://openalex.org/I8204097"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.3072,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.91852837,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"18","issue":"1","first_page":"12","last_page":"12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/polyploid","display_name":"Polyploid","score":0.8461817502975464},{"id":"https://openalex.org/keywords/linkage","display_name":"Linkage (software)","score":0.8110170960426331},{"id":"https://openalex.org/keywords/ploidy","display_name":"Ploidy","score":0.6261898279190063},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.5708762407302856},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5111497044563293},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4644394516944885},{"id":"https://openalex.org/keywords/genetic-linkage","display_name":"Genetic linkage","score":0.4630022346973419},{"id":"https://openalex.org/keywords/dendrogram","display_name":"Dendrogram","score":0.43486836552619934},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40677109360694885},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.324817419052124},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.32330209016799927},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.32004836201667786},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1852531135082245},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1846158504486084},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.05906286835670471}],"concepts":[{"id":"https://openalex.org/C2776626444","wikidata":"https://www.wikidata.org/wiki/Q213410","display_name":"Polyploid","level":4,"score":0.8461817502975464},{"id":"https://openalex.org/C31266012","wikidata":"https://www.wikidata.org/wiki/Q6554340","display_name":"Linkage (software)","level":3,"score":0.8110170960426331},{"id":"https://openalex.org/C143191323","wikidata":"https://www.wikidata.org/wiki/Q118406","display_name":"Ploidy","level":3,"score":0.6261898279190063},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.5708762407302856},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5111497044563293},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4644394516944885},{"id":"https://openalex.org/C142870003","wikidata":"https://www.wikidata.org/wiki/Q843863","display_name":"Genetic linkage","level":3,"score":0.4630022346973419},{"id":"https://openalex.org/C172312944","wikidata":"https://www.wikidata.org/wiki/Q1957903","display_name":"Dendrogram","level":4,"score":0.43486836552619934},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40677109360694885},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.324817419052124},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.32330209016799927},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.32004836201667786},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1852531135082245},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1846158504486084},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.05906286835670471},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008040","descriptor_name":"Genetic Linkage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008040","descriptor_name":"Genetic Linkage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008040","descriptor_name":"Genetic Linkage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011123","descriptor_name":"Polyploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011123","descriptor_name":"Polyploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011123","descriptor_name":"Polyploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-016-1416-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1416-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1416-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28049428","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28049428","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:epub.ub.uni-muenchen.de:55936","is_oa":false,"landing_page_url":"http://nbn-resolving.de/urn:nbn:de:bvb:19-epub-55936-4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401845","display_name":"Open access LMU (Ludwid Maxmilian's Universitat Munchen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I8204097","host_organization_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","host_organization_lineage":["https://openalex.org/I8204097"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"doc-type:article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5210299","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5210299","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-1416-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1416-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1416-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.6200000047683716,"id":"https://metadata.un.org/sdg/2"}],"awards":[{"id":"https://openalex.org/G3981126665","display_name":null,"funder_award_id":"Seventh Framework Programme","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4464054948","display_name":"Innotive Training Environment for Researchers Combining the Resources of Statistical Science, Informatics & Genetics","funder_award_id":"289974","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8051717526","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8377737632","display_name":null,"funder_award_id":"289974","funder_id":"https://openalex.org/F4320334960","funder_display_name":"Seventh Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334960","display_name":"Seventh Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2565780679.pdf","grobid_xml":"https://content.openalex.org/works/W2565780679.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W258794974","https://openalex.org/W1530654453","https://openalex.org/W1968566330","https://openalex.org/W2002872949","https://openalex.org/W2028578216","https://openalex.org/W2031650316","https://openalex.org/W2044096740","https://openalex.org/W2055063781","https://openalex.org/W2061744749","https://openalex.org/W2068702161","https://openalex.org/W2075490230","https://openalex.org/W2108785666","https://openalex.org/W2112238757","https://openalex.org/W2115982342","https://openalex.org/W2116053845","https://openalex.org/W2128436892","https://openalex.org/W2129970177","https://openalex.org/W2137111266","https://openalex.org/W2143303451","https://openalex.org/W2143326696","https://openalex.org/W2143675463","https://openalex.org/W2146995709","https://openalex.org/W2157011755","https://openalex.org/W2159196766","https://openalex.org/W2165228853","https://openalex.org/W2171685124","https://openalex.org/W2225805508","https://openalex.org/W2884045291","https://openalex.org/W2938182998","https://openalex.org/W6631662054"],"related_works":["https://openalex.org/W2379004733","https://openalex.org/W2104566180","https://openalex.org/W2322157237","https://openalex.org/W2018908403","https://openalex.org/W2077727980","https://openalex.org/W1999275754","https://openalex.org/W61422302","https://openalex.org/W4205453876","https://openalex.org/W2171460859","https://openalex.org/W2057124609"],"abstract_inverted_index":{"PERGOLA":[0],"can":[1],"be":[2],"used":[3],"successfully":[4],"to":[5],"calculate":[6],"linkage":[7],"maps":[8],"for":[9],"diploid":[10],"and":[11,14],"polyploid":[12],"species":[13],"outperforms":[15],"existing":[16],"tools.":[17]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}