{"id":"https://openalex.org/W2565219355","doi":"https://doi.org/10.1186/s12859-016-1341-x","title":"MUMAL2: Improving sensitivity in shotgun proteomics using cost sensitive artificial neural networks and a threshold selector algorithm","display_name":"MUMAL2: Improving sensitivity in shotgun proteomics using cost sensitive artificial neural networks and a threshold selector algorithm","publication_year":2016,"publication_date":"2016-12-01","ids":{"openalex":"https://openalex.org/W2565219355","doi":"https://doi.org/10.1186/s12859-016-1341-x","mag":"2565219355","pmid":"https://pubmed.ncbi.nlm.nih.gov/28105913"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-1341-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1341-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1341-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1341-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029149702","display_name":"F\u00e1bio Ribeiro Cerqueira","orcid":"https://orcid.org/0000-0003-1325-2592"},"institutions":[{"id":"https://openalex.org/I146165071","display_name":"Universidade Federal de Vi\u00e7osa","ror":"https://ror.org/0409dgb37","country_code":"BR","type":"education","lineage":["https://openalex.org/I146165071"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Fabio Ribeiro Cerqueira","raw_affiliation_strings":["Department of Informatics, Universidade Federal de Vi\u00e7osa, Vi\u00e7osa, 36570-900, Brazil. fabio.cerqueira@ufv.br","Department of Informatics, Universidade Federal de Vi\u00e7osa, Vi\u00e7osa, 36570-900, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Universidade Federal de Vi\u00e7osa, Vi\u00e7osa, 36570-900, Brazil. fabio.cerqueira@ufv.br","institution_ids":[]},{"raw_affiliation_string":"Department of Informatics, Universidade Federal de Vi\u00e7osa, Vi\u00e7osa, 36570-900, Brazil","institution_ids":["https://openalex.org/I146165071"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069072170","display_name":"Adilson Mendes Ricardo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210136482","display_name":"Federal Center for Technological Education of Minas Gerais","ror":"https://ror.org/04ch49185","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210136482"]},{"id":"https://openalex.org/I146165071","display_name":"Universidade Federal de Vi\u00e7osa","ror":"https://ror.org/0409dgb37","country_code":"BR","type":"education","lineage":["https://openalex.org/I146165071"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Adilson Mendes Ricardo","raw_affiliation_strings":["Department of Computing and Construction, Centro Federal de Educa\u00e7\u00e3o Tecnol\u00f3gica de Minas Gerais, Rua 19 de Novembro, 121, Tim\u00f3teo, 35180-008, Brazil","Department of Informatics, Universidade Federal de Vi\u00e7osa, Vi\u00e7osa, 36570-900, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Computing and Construction, Centro Federal de Educa\u00e7\u00e3o Tecnol\u00f3gica de Minas Gerais, Rua 19 de Novembro, 121, Tim\u00f3teo, 35180-008, Brazil","institution_ids":["https://openalex.org/I4210136482"]},{"raw_affiliation_string":"Department of Informatics, Universidade Federal de Vi\u00e7osa, Vi\u00e7osa, 36570-900, Brazil","institution_ids":["https://openalex.org/I146165071"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013629592","display_name":"Alcione de Paiva Oliveira","orcid":"https://orcid.org/0000-0001-9129-8620"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]},{"id":"https://openalex.org/I146165071","display_name":"Universidade Federal de Vi\u00e7osa","ror":"https://ror.org/0409dgb37","country_code":"BR","type":"education","lineage":["https://openalex.org/I146165071"]}],"countries":["BR","GB"],"is_corresponding":false,"raw_author_name":"Alcione de Paiva Oliveira","raw_affiliation_strings":["Department of Computer Science, University of Sheffield, Western Bank, S10 2TN, Sheffield, UK","Department of Informatics, Universidade Federal de Vi\u00e7osa, Vi\u00e7osa, 36570-900, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Sheffield, Western Bank, S10 2TN, Sheffield, UK","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"Department of Informatics, Universidade Federal de Vi\u00e7osa, Vi\u00e7osa, 36570-900, Brazil","institution_ids":["https://openalex.org/I146165071"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111907321","display_name":"Armin Graber","orcid":null},"institutions":[{"id":"https://openalex.org/I4210117619","display_name":"Novartis (United States)","ror":"https://ror.org/028fhxy95","country_code":"US","type":"company","lineage":["https://openalex.org/I1283582996","https://openalex.org/I4210117619"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Armin Graber","raw_affiliation_strings":["Research and Product Development of Genoptix, a Novartis company, 2110 Rutherford Rd, Carlsbad, 92008, USA"],"affiliations":[{"raw_affiliation_string":"Research and Product Development of Genoptix, a Novartis company, 2110 Rutherford Rd, Carlsbad, 92008, USA","institution_ids":["https://openalex.org/I4210117619"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038698111","display_name":"Christian Baumg\u00e4rtner","orcid":"https://orcid.org/0000-0002-3763-5195"},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Christian Baumgartner","raw_affiliation_strings":["Institute of Health Care Engineering with European Notified Body of Medical Devices, Graz University of Technology, Stremayrgasse 16/II, Graz, A-8010, Austria"],"affiliations":[{"raw_affiliation_string":"Institute of Health Care Engineering with European Notified Body of Medical Devices, Graz University of Technology, Stremayrgasse 16/II, Graz, A-8010, Austria","institution_ids":["https://openalex.org/I4092182"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5029149702"],"corresponding_institution_ids":["https://openalex.org/I146165071"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.455,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.70629201,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"17","issue":"S18","first_page":"472","last_page":"472"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/shotgun-proteomics","display_name":"Shotgun proteomics","score":0.7237562537193298},{"id":"https://openalex.org/keywords/shotgun","display_name":"Shotgun","score":0.7052963972091675},{"id":"https://openalex.org/keywords/sensitivity","display_name":"Sensitivity (control systems)","score":0.6868888139724731},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6158760190010071},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.511800229549408},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.48483550548553467},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.42783695459365845},{"id":"https://openalex.org/keywords/crashworthiness","display_name":"Crashworthiness","score":0.42528074979782104},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.420244038105011},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33828139305114746},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32376646995544434},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20406079292297363},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.15878969430923462},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.062153398990631104},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.05560940504074097}],"concepts":[{"id":"https://openalex.org/C68289359","wikidata":"https://www.wikidata.org/wiki/Q7502514","display_name":"Shotgun proteomics","level":4,"score":0.7237562537193298},{"id":"https://openalex.org/C2781434637","wikidata":"https://www.wikidata.org/wiki/Q486396","display_name":"Shotgun","level":3,"score":0.7052963972091675},{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.6868888139724731},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6158760190010071},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.511800229549408},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.48483550548553467},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.42783695459365845},{"id":"https://openalex.org/C2779240047","wikidata":"https://www.wikidata.org/wiki/Q3283022","display_name":"Crashworthiness","level":3,"score":0.42528074979782104},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.420244038105011},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33828139305114746},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32376646995544434},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20406079292297363},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.15878969430923462},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.062153398990631104},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.05560940504074097},{"id":"https://openalex.org/C183469790","wikidata":"https://www.wikidata.org/wiki/Q333501","display_name":"Crash","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000191","qualifier_name":"economics","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000191","qualifier_name":"economics","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000191","qualifier_name":"economics","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000191","qualifier_name":"economics","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000191","qualifier_name":"economics","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000191","qualifier_name":"economics","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-016-1341-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1341-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1341-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28105913","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28105913","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:americanae.aecid.es:1868692","is_oa":true,"landing_page_url":"https://doi-org.ez35.periodicos.capes.gov.br/10.1186/s12859-016-1341-x","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:LOCUS Reposit\u00f3rio Institucional da UFV","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:locus.ufv.br:123456789/12157","is_oa":true,"landing_page_url":"http://www.locus.ufv.br/handle/123456789/12157","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:UFV","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5249030","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5249030","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-1341-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1341-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1341-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G120275728","display_name":null,"funder_award_id":"Univer","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3331681876","display_name":null,"funder_award_id":"CAPES","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G5079005330","display_name":null,"funder_award_id":"support","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G7614337225","display_name":null,"funder_award_id":"CAPES","funder_id":"https://openalex.org/F4320322980","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de Minas Gerais"},{"id":"https://openalex.org/G8357976619","display_name":null,"funder_award_id":"FAPEMIG","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"}],"funders":[{"id":"https://openalex.org/F4320310430","display_name":"TU Graz, Internationale Beziehungen und Mobilit\u00e4tsprogramme","ror":"https://ror.org/00d7xrm67"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320322980","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de Minas Gerais","ror":"https://ror.org/00nc55f03"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2565219355.pdf","grobid_xml":"https://content.openalex.org/works/W2565219355.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W167016754","https://openalex.org/W1565377632","https://openalex.org/W1570448133","https://openalex.org/W1971887998","https://openalex.org/W1972115991","https://openalex.org/W1974042541","https://openalex.org/W1975057169","https://openalex.org/W1981593008","https://openalex.org/W1988667155","https://openalex.org/W1993450321","https://openalex.org/W2006325103","https://openalex.org/W2009382747","https://openalex.org/W2011728119","https://openalex.org/W2015556811","https://openalex.org/W2026465178","https://openalex.org/W2029426756","https://openalex.org/W2056000843","https://openalex.org/W2056499061","https://openalex.org/W2069860553","https://openalex.org/W2071442384","https://openalex.org/W2071659396","https://openalex.org/W2094498700","https://openalex.org/W2096057003","https://openalex.org/W2110895863","https://openalex.org/W2112078820","https://openalex.org/W2118993019","https://openalex.org/W2133990480","https://openalex.org/W2141265481","https://openalex.org/W2147640998","https://openalex.org/W2149052962","https://openalex.org/W2166872160","https://openalex.org/W2168925298","https://openalex.org/W2482589566","https://openalex.org/W2913130920","https://openalex.org/W2914552032"],"related_works":["https://openalex.org/W2036789867","https://openalex.org/W4299663967","https://openalex.org/W2371475667","https://openalex.org/W2971480178","https://openalex.org/W2046727518","https://openalex.org/W1998648829","https://openalex.org/W2121165269","https://openalex.org/W4254600462","https://openalex.org/W2157839186","https://openalex.org/W1662072142"],"abstract_inverted_index":{"The":[0],"inclusion":[1],"of":[2,32],"a":[3,7,38],"cost":[4],"matrix":[5],"and":[6],"probability":[8],"threshold":[9],"selector":[10],"algorithm":[11],"to":[12,28],"the":[13,18,29],"learning":[14],"task":[15,31],"further":[16],"improves":[17],"target-decoy":[19],"database":[20],"analysis":[21],"for":[22,42],"identifying":[23],"peptides,":[24],"which":[25],"optimally":[26],"contributes":[27],"challenging":[30],"protein":[33],"level":[34],"identification,":[35],"resulting":[36],"in":[37],"powerful":[39],"computational":[40],"tool":[41],"shotgun":[43],"proteomics.":[44]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}