{"id":"https://openalex.org/W2563280541","doi":"https://doi.org/10.1186/s12859-016-1338-5","title":"ProClaT, a new bioinformatics tool for in silico protein reclassification: case study of DraB, a protein coded from the draTGB operon in Azospirillum brasilense","display_name":"ProClaT, a new bioinformatics tool for in silico protein reclassification: case study of DraB, a protein coded from the draTGB operon in Azospirillum brasilense","publication_year":2016,"publication_date":"2016-12-01","ids":{"openalex":"https://openalex.org/W2563280541","doi":"https://doi.org/10.1186/s12859-016-1338-5","mag":"2563280541","pmid":"https://pubmed.ncbi.nlm.nih.gov/28105917"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-1338-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1338-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1338-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1338-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112238000","display_name":"E. R\u00fcbel","orcid":null},"institutions":[{"id":"https://openalex.org/I52418104","display_name":"Universidade Federal do Paran\u00e1","ror":"https://ror.org/05syd6y78","country_code":"BR","type":"education","lineage":["https://openalex.org/I52418104"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Elisa Terumi Rubel","raw_affiliation_strings":[", Rua Dr. Alcides Vieira Arcoverde 1225, Curitiba, Paran\u00e1, Brazil","Laboratory of Bioinformatics, Professional and Technological Education Sector, Federal University of Paran\u00e1, Curitiba, PR, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":", Rua Dr. Alcides Vieira Arcoverde 1225, Curitiba, Paran\u00e1, Brazil","institution_ids":["https://openalex.org/I52418104"]},{"raw_affiliation_string":"Laboratory of Bioinformatics, Professional and Technological Education Sector, Federal University of Paran\u00e1, Curitiba, PR, Brazil","institution_ids":["https://openalex.org/I52418104"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087379620","display_name":"Roberto Tadeu Raittz","orcid":"https://orcid.org/0000-0002-5271-991X"},"institutions":[{"id":"https://openalex.org/I52418104","display_name":"Universidade Federal do Paran\u00e1","ror":"https://ror.org/05syd6y78","country_code":"BR","type":"education","lineage":["https://openalex.org/I52418104"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Roberto Tadeu Raittz","raw_affiliation_strings":[", Rua Dr. Alcides Vieira Arcoverde 1225, Curitiba, Paran\u00e1, Brazil","Laboratory of Bioinformatics, Professional and Technological Education Sector, Federal University of Paran\u00e1, Curitiba, PR, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":", Rua Dr. Alcides Vieira Arcoverde 1225, Curitiba, Paran\u00e1, Brazil","institution_ids":["https://openalex.org/I52418104"]},{"raw_affiliation_string":"Laboratory of Bioinformatics, Professional and Technological Education Sector, Federal University of Paran\u00e1, Curitiba, PR, Brazil","institution_ids":["https://openalex.org/I52418104"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067316087","display_name":"Nilson Da Rocha Coimbra","orcid":"https://orcid.org/0000-0001-9407-4761"},"institutions":[{"id":"https://openalex.org/I52418104","display_name":"Universidade Federal do Paran\u00e1","ror":"https://ror.org/05syd6y78","country_code":"BR","type":"education","lineage":["https://openalex.org/I52418104"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Nilson Antonio da Rocha Coimbra","raw_affiliation_strings":[", Rua Dr. Alcides Vieira Arcoverde 1225, Curitiba, Paran\u00e1, Brazil","Laboratory of Bioinformatics, Professional and Technological Education Sector, Federal University of Paran\u00e1, Curitiba, PR, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":", Rua Dr. Alcides Vieira Arcoverde 1225, Curitiba, Paran\u00e1, Brazil","institution_ids":["https://openalex.org/I52418104"]},{"raw_affiliation_string":"Laboratory of Bioinformatics, Professional and Technological Education Sector, Federal University of Paran\u00e1, Curitiba, PR, Brazil","institution_ids":["https://openalex.org/I52418104"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112238001","display_name":"Michelly Alves Coutinho Gehlen","orcid":null},"institutions":[{"id":"https://openalex.org/I52418104","display_name":"Universidade Federal do Paran\u00e1","ror":"https://ror.org/05syd6y78","country_code":"BR","type":"education","lineage":["https://openalex.org/I52418104"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Michelly Alves Coutinho Gehlen","raw_affiliation_strings":[", Rua Dr. Alcides Vieira Arcoverde 1225, Curitiba, Paran\u00e1, Brazil","Laboratory of Bioinformatics, Professional and Technological Education Sector, Federal University of Paran\u00e1, Curitiba, PR, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":", Rua Dr. Alcides Vieira Arcoverde 1225, Curitiba, Paran\u00e1, Brazil","institution_ids":["https://openalex.org/I52418104"]},{"raw_affiliation_string":"Laboratory of Bioinformatics, Professional and Technological Education Sector, Federal University of Paran\u00e1, Curitiba, PR, Brazil","institution_ids":["https://openalex.org/I52418104"]}]},{"author_position":"last","author":{"id":null,"display_name":"F\u00e1bio de Oliveira Pedrosa","orcid":null},"institutions":[{"id":"https://openalex.org/I52418104","display_name":"Universidade Federal do Paran\u00e1","ror":"https://ror.org/05syd6y78","country_code":"BR","type":"education","lineage":["https://openalex.org/I52418104"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"F\u00e1bio de Oliveira Pedrosa","raw_affiliation_strings":[", Av. Cel. Francisco H. dos Santos, s/n, Curitiba, Paran\u00e1, Brazil. fpedrosa@ufpr.br","Department of Biochemistry and Molecular Biology, Federal University of Paran\u00e1, Curitiba, PR, Brazil. fpedrosa@ufpr.br","Department of Biochemistry and Molecular Biology, Federal University of Paran\u00e1, Curitiba, PR, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":", Av. Cel. Francisco H. dos Santos, s/n, Curitiba, Paran\u00e1, Brazil. fpedrosa@ufpr.br","institution_ids":["https://openalex.org/I52418104"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Federal University of Paran\u00e1, Curitiba, PR, Brazil. fpedrosa@ufpr.br","institution_ids":["https://openalex.org/I52418104"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Federal University of Paran\u00e1, Curitiba, PR, Brazil","institution_ids":["https://openalex.org/I52418104"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I52418104"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.093,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.54673376,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"17","issue":"S18","first_page":"455","last_page":"455"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11626","display_name":"Metalloenzymes and iron-sulfur proteins","score":0.9674999713897705,"subfield":{"id":"https://openalex.org/subfields/2105","display_name":"Renewable Energy, Sustainability and the Environment"},"field":{"id":"https://openalex.org/fields/21","display_name":"Energy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11626","display_name":"Metalloenzymes and iron-sulfur proteins","score":0.9674999713897705,"subfield":{"id":"https://openalex.org/subfields/2105","display_name":"Renewable Energy, Sustainability and the Environment"},"field":{"id":"https://openalex.org/fields/21","display_name":"Energy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.007400000002235174,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10404","display_name":"Enzyme Catalysis and Immobilization","score":0.002899999963119626,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.8013119697570801},{"id":"https://openalex.org/keywords/azospirillum-brasilense","display_name":"Azospirillum brasilense","score":0.756136417388916},{"id":"https://openalex.org/keywords/operon","display_name":"Operon","score":0.7373642921447754},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5791433453559875},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5464656352996826},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.5218902230262756},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4508303999900818},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3627423346042633},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3225172460079193},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.2201208472251892},{"id":"https://openalex.org/keywords/microbial-inoculant","display_name":"Microbial inoculant","score":0.21840408444404602},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.16698402166366577},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15949732065200806}],"concepts":[{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.8013119697570801},{"id":"https://openalex.org/C2781040669","wikidata":"https://www.wikidata.org/wiki/Q16836505","display_name":"Azospirillum brasilense","level":4,"score":0.756136417388916},{"id":"https://openalex.org/C203075996","wikidata":"https://www.wikidata.org/wiki/Q139677","display_name":"Operon","level":4,"score":0.7373642921447754},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5791433453559875},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5464656352996826},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.5218902230262756},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4508303999900818},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3627423346042633},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3225172460079193},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.2201208472251892},{"id":"https://openalex.org/C121677567","wikidata":"https://www.wikidata.org/wiki/Q73425","display_name":"Microbial inoculant","level":3,"score":0.21840408444404602},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.16698402166366577},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15949732065200806},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009586","descriptor_name":"Nitrogen Fixation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009586","descriptor_name":"Nitrogen Fixation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009586","descriptor_name":"Nitrogen Fixation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009591","descriptor_name":"Nitrogenase","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009591","descriptor_name":"Nitrogenase","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009591","descriptor_name":"Nitrogenase","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009591","descriptor_name":"Nitrogenase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009591","descriptor_name":"Nitrogenase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009591","descriptor_name":"Nitrogenase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009591","descriptor_name":"Nitrogenase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009591","descriptor_name":"Nitrogenase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009591","descriptor_name":"Nitrogenase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015806","descriptor_name":"Azospirillum brasilense","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D015806","descriptor_name":"Azospirillum brasilense","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D015806","descriptor_name":"Azospirillum brasilense","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D015806","descriptor_name":"Azospirillum brasilense","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015806","descriptor_name":"Azospirillum brasilense","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015806","descriptor_name":"Azospirillum brasilense","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015806","descriptor_name":"Azospirillum brasilense","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015806","descriptor_name":"Azospirillum brasilense","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015806","descriptor_name":"Azospirillum brasilense","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015806","descriptor_name":"Azospirillum brasilense","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015806","descriptor_name":"Azospirillum brasilense","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015806","descriptor_name":"Azospirillum brasilense","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-016-1338-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1338-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1338-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28105917","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28105917","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5249018","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5249018","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-1338-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1338-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1338-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320324953","display_name":"Universidade Federal do Paran\u00e1","ror":null},{"id":"https://openalex.org/F4320327335","display_name":"Minist\u00e9rio da Ci\u00eancia, Tecnologia, Inova\u00e7\u00f5es e Comunica\u00e7\u00f5es","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2563280541.pdf","grobid_xml":"https://content.openalex.org/works/W2563280541.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1491804587","https://openalex.org/W1505221937","https://openalex.org/W1531143643","https://openalex.org/W1596399303","https://openalex.org/W1870496269","https://openalex.org/W1975304761","https://openalex.org/W1998444861","https://openalex.org/W2001338440","https://openalex.org/W2023514907","https://openalex.org/W2025249017","https://openalex.org/W2032991899","https://openalex.org/W2049420027","https://openalex.org/W2057021995","https://openalex.org/W2059432853","https://openalex.org/W2063559185","https://openalex.org/W2098425296","https://openalex.org/W2114850508","https://openalex.org/W2132549764","https://openalex.org/W2132644745","https://openalex.org/W2133990480","https://openalex.org/W2134424946","https://openalex.org/W2140735973","https://openalex.org/W2141545183","https://openalex.org/W2141885858","https://openalex.org/W2142827986","https://openalex.org/W2147526198","https://openalex.org/W2147536066","https://openalex.org/W2155744824","https://openalex.org/W2169306900","https://openalex.org/W2416237479"],"related_works":["https://openalex.org/W2418158658","https://openalex.org/W1615583389","https://openalex.org/W3087836433","https://openalex.org/W1559131386","https://openalex.org/W4239621017","https://openalex.org/W1594441172","https://openalex.org/W3113114396","https://openalex.org/W2322725487","https://openalex.org/W2337876757","https://openalex.org/W2114907825"],"abstract_inverted_index":{"BACKGROUND:":[0],".":[1],"Moreover,":[2],"the":[3,24,33,39,46,64,83,110,117,121,139,143,155,167,202,212],"synthesis":[4],"and":[5,28,76,80,138,176,194],"activity":[6,20,50,87],"of":[7,26,32,48,63,66,85,120,160,169,188,190,195,204,214],"nitrogenase":[8,19,49,86,156],"is":[9,21],"highly":[10,152],"regulated":[11,22],"to":[12,134,154],"prevent":[13],"energy":[14],"waste.":[15],"In":[16,91],"A.":[17,89,144],"brasilense":[18,145],"by":[23,51,109,126],"products":[25],"draG":[27,193],"draT.":[29],"The":[30,106],"product":[31,65],"draB":[34,67,146,205],"gene,":[35],"located":[36],"downstream":[37],"in":[38,45,60,82,88,207],"draTGB":[40],"operon,":[41],"may":[42],"be":[43],"involved":[44],"regulation":[47,84],"an,":[52],"as":[53,179,184],"yet,":[54],"unknown":[55],"mechanism.":[56],"RESULTS:":[57],"A":[58],"deep":[59],"silico":[61],"analysis":[62,187],"was":[68,132,199],"undertaken":[69],"aiming":[70],"at":[71],"suggesting":[72,201],"its":[73],"possible":[74],"function":[75],"involvement":[77,203],"with":[78],"DraT":[79],"DraG":[81],"brasilense.":[90],"this":[92,135],"work,":[93],"we":[94],"present":[95],"a":[96,127,150,215],"new":[97],"artificial":[98],"intelligence":[99],"strategy":[100],"for":[101,149],"protein":[102,151,159],"classification,":[103],"named":[104],"ProClaT.":[105],"features":[107],"used":[108],"pattern":[111],"recognition":[112],"model":[113],"were":[114],"derived":[115],"from":[116],"primary":[118],"structure":[119],"DraB":[122],"homologous":[123,171],"proteins,":[124,172],"calculated":[125],"ProClaT":[128,131],"internal":[129],"algorithm.":[130],"applied":[133],"case":[136],"study":[137],"results":[140],"revealed":[141],"that":[142],"gene":[147],"codes":[148],"similar":[153],"associated":[157],"NifO":[158],"Azotobacter":[161],"vinelandii.":[162],"CONCLUSIONS:":[163],"This":[164],"tool":[165],"allowed":[166],"reclassification":[168],"DraB/NifO":[170],"hypothetical,":[173],"conserved":[174],"hypothetical":[175],"those":[177],"annotated":[178],"putative":[180],"arsenate":[181],"reductase,":[182],"ArsC,":[183],"NifO-like.":[185],"An":[186],"co-occurrence":[189],"draB,":[191],"draT,":[192],"other":[196],"nif":[197],"genes":[198],"performed,":[200],"(nifO)":[206],"nitrogen":[208],"fixation,":[209],"however,":[210],"without":[211],"definition":[213],"specific":[216],"function.":[217]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
