{"id":"https://openalex.org/W2564204660","doi":"https://doi.org/10.1186/s12859-016-1333-x","title":"A network-based pathway-expanding approach for pathway analysis","display_name":"A network-based pathway-expanding approach for pathway analysis","publication_year":2016,"publication_date":"2016-12-01","ids":{"openalex":"https://openalex.org/W2564204660","doi":"https://doi.org/10.1186/s12859-016-1333-x","mag":"2564204660","pmid":"https://pubmed.ncbi.nlm.nih.gov/28155638"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-1333-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1333-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1333-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1333-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081325393","display_name":"Qiaosheng Zhang","orcid":"https://orcid.org/0000-0001-6114-8453"},"institutions":[{"id":"https://openalex.org/I4210124184","display_name":"Heilongjiang Bayi Agricultural University","ror":"https://ror.org/030jxf285","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210124184"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiaosheng Zhang","raw_affiliation_strings":["College of Science, Heilongjiang Bayi Agricultural University, Xinfeng Road, Daqing, China","School of Computer Science and Technology, Harbin Institute of Technology, West Da-Zhi Street, Harbin, China","College of Science, Heilongjiang Bayi Agricultural University, Daqing, China","School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Science, Heilongjiang Bayi Agricultural University, Xinfeng Road, Daqing, China","institution_ids":["https://openalex.org/I4210124184"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, West Da-Zhi Street, Harbin, China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"College of Science, Heilongjiang Bayi Agricultural University, Daqing, China","institution_ids":["https://openalex.org/I4210124184"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100428322","display_name":"Jie Li","orcid":"https://orcid.org/0000-0003-0973-8645"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jie Li","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, West Da-Zhi Street, Harbin, China. jieli@hit.edu.cn","School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, West Da-Zhi Street, Harbin, China. jieli@hit.edu.cn","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008822154","display_name":"Haozhe Xie","orcid":"https://orcid.org/0000-0001-9596-5179"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haozhe Xie","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, West Da-Zhi Street, Harbin, China","School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, West Da-Zhi Street, Harbin, China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075980229","display_name":"Hanqing Xue","orcid":null},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hanqing Xue","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, West Da-Zhi Street, Harbin, China","School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, West Da-Zhi Street, Harbin, China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100392447","display_name":"Yadong Wang","orcid":"https://orcid.org/0000-0001-6500-6217"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yadong Wang","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, West Da-Zhi Street, Harbin, China","School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, West Da-Zhi Street, Harbin, China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100428322"],"corresponding_institution_ids":["https://openalex.org/I204983213"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.8705,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.77498955,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"17","issue":"S17","first_page":"536","last_page":"536"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.000699999975040555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biological-pathway","display_name":"Biological pathway","score":0.651125431060791},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.611912727355957},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6037805676460266},{"id":"https://openalex.org/keywords/pathway-analysis","display_name":"Pathway analysis","score":0.5162120461463928},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.49002087116241455},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.4838091731071472},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4710051119327545},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4541648030281067},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.43956080079078674},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.41385072469711304},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3486431837081909},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.330916166305542},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27124133706092834},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1533776819705963},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14035212993621826},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.10625237226486206}],"concepts":[{"id":"https://openalex.org/C9927688","wikidata":"https://www.wikidata.org/wiki/Q4915012","display_name":"Biological pathway","level":4,"score":0.651125431060791},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.611912727355957},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6037805676460266},{"id":"https://openalex.org/C2779230013","wikidata":"https://www.wikidata.org/wiki/Q25303877","display_name":"Pathway analysis","level":4,"score":0.5162120461463928},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.49002087116241455},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.4838091731071472},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4710051119327545},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4541648030281067},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.43956080079078674},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.41385072469711304},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3486431837081909},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.330916166305542},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27124133706092834},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1533776819705963},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14035212993621826},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.10625237226486206},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-016-1333-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1333-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1333-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28155638","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28155638","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5259956","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5259956","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-1333-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1333-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1333-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5699999928474426,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1449106534","display_name":null,"funder_award_id":"2016YFC0901905","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G2474076002","display_name":null,"funder_award_id":"2016YFC0901905","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G3092211254","display_name":null,"funder_award_id":"2015AA020108","funder_id":"https://openalex.org/F4320335773","funder_display_name":"National High-tech Research and Development Program"},{"id":"https://openalex.org/G3567749289","display_name":"\u57fa\u4e8e\u5206\u5b50\u751f\u7269\u6807\u8bb0\u7684\u4e2d\u9ad8\u5371\u4e73\u817a\u764c\u590d\u53d1\u9884\u6d4b\u6a21\u578b\u7814\u7a76","funder_award_id":"61471147","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3880257783","display_name":null,"funder_award_id":"No.61471147","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4855419698","display_name":null,"funder_award_id":"No. F2016016","funder_id":"https://openalex.org/F4320323085","funder_display_name":"Natural Science Foundation of Heilongjiang Province"},{"id":"https://openalex.org/G5300874671","display_name":null,"funder_award_id":"2015AA020101","funder_id":"https://openalex.org/F4320335773","funder_display_name":"National High-tech Research and Development Program"},{"id":"https://openalex.org/G5501700566","display_name":null,"funder_award_id":"2015AA020101","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G6359665452","display_name":null,"funder_award_id":"Grant No. F2016016","funder_id":"https://openalex.org/F4320323085","funder_display_name":"Natural Science Foundation of Heilongjiang Province"},{"id":"https://openalex.org/G6920449994","display_name":null,"funder_award_id":"2016YFC0901905","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7470611966","display_name":null,"funder_award_id":"F2016016","funder_id":"https://openalex.org/F4320323085","funder_display_name":"Natural Science Foundation of Heilongjiang Province"},{"id":"https://openalex.org/G7582427561","display_name":null,"funder_award_id":"2015AA020108","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7869910188","display_name":null,"funder_award_id":"2015AA020101","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8710076561","display_name":null,"funder_award_id":"2015AA020108","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323085","display_name":"Natural Science Foundation of Heilongjiang Province","ror":null},{"id":"https://openalex.org/F4320335773","display_name":"National High-tech Research and Development Program","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2564204660.pdf","grobid_xml":"https://content.openalex.org/works/W2564204660.grobid-xml"},"referenced_works_count":95,"referenced_works":["https://openalex.org/W175449331","https://openalex.org/W200342117","https://openalex.org/W944680478","https://openalex.org/W953912505","https://openalex.org/W1634764273","https://openalex.org/W1699455313","https://openalex.org/W1771887010","https://openalex.org/W1825157170","https://openalex.org/W1892496998","https://openalex.org/W1923923633","https://openalex.org/W1953201471","https://openalex.org/W1963566235","https://openalex.org/W1967220865","https://openalex.org/W1968385806","https://openalex.org/W1976381141","https://openalex.org/W1977481294","https://openalex.org/W1978230112","https://openalex.org/W1979009164","https://openalex.org/W1980784279","https://openalex.org/W1982292101","https://openalex.org/W1983876698","https://openalex.org/W1984286072","https://openalex.org/W1984390299","https://openalex.org/W1986829891","https://openalex.org/W1989308516","https://openalex.org/W1994922120","https://openalex.org/W1997278262","https://openalex.org/W2001780798","https://openalex.org/W2010457001","https://openalex.org/W2012310009","https://openalex.org/W2014409119","https://openalex.org/W2016568498","https://openalex.org/W2020859582","https://openalex.org/W2022439431","https://openalex.org/W2033274910","https://openalex.org/W2044445464","https://openalex.org/W2047153491","https://openalex.org/W2048580007","https://openalex.org/W2050077513","https://openalex.org/W2050409614","https://openalex.org/W2050522518","https://openalex.org/W2054838472","https://openalex.org/W2060411619","https://openalex.org/W2060880575","https://openalex.org/W2060934232","https://openalex.org/W2061870936","https://openalex.org/W2072071750","https://openalex.org/W2074906123","https://openalex.org/W2075085587","https://openalex.org/W2087250130","https://openalex.org/W2087345890","https://openalex.org/W2091166808","https://openalex.org/W2093237759","https://openalex.org/W2098425296","https://openalex.org/W2100714130","https://openalex.org/W2100980426","https://openalex.org/W2102074241","https://openalex.org/W2102311474","https://openalex.org/W2103012318","https://openalex.org/W2103017472","https://openalex.org/W2105400389","https://openalex.org/W2110327197","https://openalex.org/W2110687686","https://openalex.org/W2112811019","https://openalex.org/W2118640842","https://openalex.org/W2119185310","https://openalex.org/W2120720602","https://openalex.org/W2120842170","https://openalex.org/W2120982869","https://openalex.org/W2128601422","https://openalex.org/W2130410032","https://openalex.org/W2135197754","https://openalex.org/W2143873179","https://openalex.org/W2145257123","https://openalex.org/W2147714160","https://openalex.org/W2148590574","https://openalex.org/W2152307319","https://openalex.org/W2154611785","https://openalex.org/W2154952425","https://openalex.org/W2156830367","https://openalex.org/W2158501247","https://openalex.org/W2162142896","https://openalex.org/W2163527981","https://openalex.org/W2164381236","https://openalex.org/W2165160727","https://openalex.org/W2167060703","https://openalex.org/W2169664141","https://openalex.org/W2169879639","https://openalex.org/W2171437346","https://openalex.org/W2269777088","https://openalex.org/W2330140969","https://openalex.org/W2404160391","https://openalex.org/W2465339488","https://openalex.org/W2497418601","https://openalex.org/W4230392683"],"related_works":["https://openalex.org/W1506642351","https://openalex.org/W2114466827","https://openalex.org/W2151866902","https://openalex.org/W3175249469","https://openalex.org/W2149060064","https://openalex.org/W2398534503","https://openalex.org/W1980376450","https://openalex.org/W2180749449","https://openalex.org/W2606235363","https://openalex.org/W2564204660"],"abstract_inverted_index":{"BACKGROUND:":[0],"Pathway":[1],"analysis":[2,31,208],"combining":[3],"multiple":[4],"types":[5],"of":[6,25,55,80,119,122,187,205],"high-throughput":[7],"data,":[8],"such":[9,176],"as":[10,177],"genomics":[11],"and":[12,52,58,93,104,162,179,181,219],"proteomics,":[13],"has":[14],"become":[15],"the":[16,23,48,56,77,117,126,144,150,159,167,184,188,203,214,228],"first":[17],"choice":[18],"to":[19,36,111,135,201,227],"gain":[20],"insights":[21],"into":[22,46,83],"pathogenesis":[24],"complex":[26,38],"diseases.":[27,39],"Currently,":[28],"several":[29],"pathway":[30,57,105,207],"methods":[32,42],"have":[33],"been":[34],"developed":[35],"study":[37],"However,":[40],"these":[41,62],"did":[43],"not":[44],"take":[45],"account":[47],"interaction":[49,90],"between":[50,59],"internal":[51],"external":[53],"genes":[54],"pathways.":[60,192],"Hence,":[61],"approaches":[63],"still":[64],"face":[65],"some":[66],"challenges.":[67],"Here,":[68],"we":[69],"propose":[70],"a":[71,142],"network-based":[72,196],"pathway-expanding":[73,197],"approach":[74,198],"that":[75,213],"takes":[76],"topological":[78,120],"structures":[79,121],"biological":[81,156],"networks":[82,91],"account.":[84],"RESULTS:":[85],"First,":[86],"two":[87,127,137],"weighted":[88,128],"gene-gene":[89],"(tumor":[92],"normal)":[94],"are":[95,109,153,225],"constructed":[96],"integrating":[97],"protein-protein":[98],"interaction(PPI)":[99],"information,":[100],"gene":[101],"expression":[102],"data":[103],"databases.":[106],"Then,":[107],"they":[108],"used":[110],"identify":[112,221],"significant":[113,222],"pathways":[114,124,147,223],"through":[115],"testing":[116],"difference":[118],"expanded":[123,191],"in":[125],"networks.":[129],"The":[130],"proposed":[131,151,168,200,215],"method":[132,152,169,216],"is":[133,170,199],"employed":[134],"analyze":[136],"breast":[138],"cancer":[139],"data.":[140],"As":[141],"result,":[143],"top":[145,189],"15":[146,190],"identified":[148],"using":[149,183],"supported":[154],"by":[155],"knowledge":[157],"from":[158],"published":[160],"literatures":[161],"other":[163,174],"methods.":[164],"In":[165],"addition,":[166],"also":[171],"compared":[172],"with":[173],"methods,":[175],"GSEA":[178],"SPIA,":[180],"estimated":[182],"classification":[185],"performance":[186],"CONCLUSIONS:":[193],"A":[194],"novel":[195],"avoid":[202],"limitations":[204],"existing":[206],"approaches.":[209],"Experimental":[210],"results":[211],"indicate":[212],"can":[217],"accurately":[218],"reliably":[220],"which":[224],"related":[226],"corresponding":[229],"disease.":[230]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2017,"cited_by_count":2}],"updated_date":"2026-06-06T09:05:17.133730","created_date":"2025-10-10T00:00:00"}
