{"id":"https://openalex.org/W2563196696","doi":"https://doi.org/10.1186/s12859-016-1306-0","title":"DGW: an exploratory data analysis tool for clustering and visualisation of epigenomic marks","display_name":"DGW: an exploratory data analysis tool for clustering and visualisation of epigenomic marks","publication_year":2016,"publication_date":"2016-12-01","ids":{"openalex":"https://openalex.org/W2563196696","doi":"https://doi.org/10.1186/s12859-016-1306-0","mag":"2563196696","pmid":"https://pubmed.ncbi.nlm.nih.gov/28105912"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-1306-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1306-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1306-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1306-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011772707","display_name":"Saulius Lukauskas","orcid":"https://orcid.org/0000-0001-9781-2707"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Saulius Lukauskas","raw_affiliation_strings":["Department of Chemical Engineering, Imperial College London, London, SW7 2AZ, UK. saulius.lukauskas13@imperial.ac.uk","Department of Chemical Engineering, Imperial College London, London, SW7 2AZ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, Imperial College London, London, SW7 2AZ, UK. saulius.lukauskas13@imperial.ac.uk","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Department of Chemical Engineering, Imperial College London, London, SW7 2AZ, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015603009","display_name":"Roberto Visintainer","orcid":"https://orcid.org/0000-0003-1289-6871"},"institutions":[{"id":"https://openalex.org/I2277624104","display_name":"Fondazione Bruno Kessler","ror":"https://ror.org/01j33xk10","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2277624104"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Roberto Visintainer","raw_affiliation_strings":["Fondazione Bruno Kessler, Via Sommarive 18, Povo, I-38123, TN, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fondazione Bruno Kessler, Via Sommarive 18, Povo, I-38123, TN, Italy","institution_ids":["https://openalex.org/I2277624104"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017674487","display_name":"Guido Sanguinetti","orcid":"https://orcid.org/0000-0002-6663-8336"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Guido Sanguinetti","raw_affiliation_strings":["School of Informatics, University of Edinburgh, 10 Crichton St, Edinburgh, EH8 9AB, Scotland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics, University of Edinburgh, 10 Crichton St, Edinburgh, EH8 9AB, Scotland","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060937554","display_name":"Gabriele Schweikert","orcid":"https://orcid.org/0000-0002-7813-7918"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gabriele B. Schweikert","raw_affiliation_strings":["School of Informatics, University of Edinburgh, 10 Crichton St, Edinburgh, EH8 9AB, Scotland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics, University of Edinburgh, 10 Crichton St, Edinburgh, EH8 9AB, Scotland","institution_ids":["https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5011772707"],"corresponding_institution_ids":["https://openalex.org/I47508984"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.8015,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.75545043,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"17","issue":"S16","first_page":"447","last_page":"447"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9534000158309937,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9534000158309937,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.010900000110268593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.009200000204145908,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epigenomics","display_name":"Epigenomics","score":0.823674201965332},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6314562559127808},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5541700720787048},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5357246994972229},{"id":"https://openalex.org/keywords/epigenome","display_name":"Epigenome","score":0.42426592111587524},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.41274768114089966},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.41177552938461304},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3850463032722473},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2819468677043915},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.266981840133667},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.26066893339157104},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.1974172592163086},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1906183660030365}],"concepts":[{"id":"https://openalex.org/C121912465","wikidata":"https://www.wikidata.org/wiki/Q3589153","display_name":"Epigenomics","level":5,"score":0.823674201965332},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6314562559127808},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5541700720787048},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5357246994972229},{"id":"https://openalex.org/C117717151","wikidata":"https://www.wikidata.org/wiki/Q3589155","display_name":"Epigenome","level":5,"score":0.42426592111587524},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.41274768114089966},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.41177552938461304},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3850463032722473},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2819468677043915},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.266981840133667},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.26066893339157104},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.1974172592163086},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1906183660030365},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007938","descriptor_name":"Leukemia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007938","descriptor_name":"Leukemia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007938","descriptor_name":"Leukemia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D042421","descriptor_name":"Histone Code","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D042421","descriptor_name":"Histone Code","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D042421","descriptor_name":"Histone Code","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057890","descriptor_name":"Epigenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057890","descriptor_name":"Epigenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057890","descriptor_name":"Epigenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-016-1306-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1306-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1306-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28105912","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28105912","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:discovery.dundee.ac.uk:openaire_cris_publications/e1625b5e-b2a7-4ff6-a73d-d831d7e1d583","is_oa":false,"landing_page_url":"https://discovery.dundee.ac.uk/en/publications/e1625b5e-b2a7-4ff6-a73d-d831d7e1d583","pdf_url":null,"source":{"id":"https://openalex.org/S4306400523","display_name":"Discovery Research Portal (University of Dundee)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177639307","host_organization_name":"University of Dundee","host_organization_lineage":["https://openalex.org/I177639307"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lukauskas, S, Visintainer, R, Sanguinetti, G & Schweikert, G 2016, 'DGW : an exploratory data analysis tool for clustering and visualisation of epigenomic marks', BMC Bioinformatics, vol. 17, no. Supl 16, 447, pp. 53-63. https://doi.org/10.1186/s12859-016-1306-0","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pure.ed.ac.uk:openaire/16a03a18-38fa-4870-9999-b1a2ee85a2df","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/16a03a18-38fa-4870-9999-b1a2ee85a2df","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lukauskas, S, Visintainer, R, Sanguinetti, G & Schweikert, G 2016, 'DGW: an exploratory data analysis tool for clustering and visualisation of epigenomic marks', BMC Bioinformatics, vol. 17, no. 16. https://doi.org/10.1186/s12859-016-1306-0","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:5249015","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5249015","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.ed.ac.uk:publications/16a03a18-38fa-4870-9999-b1a2ee85a2df","is_oa":true,"landing_page_url":"https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1306-0","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Lukauskas, S, Visintainer, R, Sanguinetti, G & Schweikert, G 2016, 'DGW: an exploratory data analysis tool for clustering and visualisation of epigenomic marks', BMC Bioinformatics, vol. 17, no. 16. https://doi.org/10.1186/s12859-016-1306-0","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-1306-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1306-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1306-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2563196696.pdf","grobid_xml":"https://content.openalex.org/works/W2563196696.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W170732776","https://openalex.org/W1563224951","https://openalex.org/W1975435892","https://openalex.org/W1982881824","https://openalex.org/W1988301066","https://openalex.org/W2015416439","https://openalex.org/W2083245183","https://openalex.org/W2092988184","https://openalex.org/W2101102182","https://openalex.org/W2107092366","https://openalex.org/W2109553965","https://openalex.org/W2111353388","https://openalex.org/W2120347928","https://openalex.org/W2120440617","https://openalex.org/W2128160875","https://openalex.org/W2128999403","https://openalex.org/W2144328273","https://openalex.org/W2147347448","https://openalex.org/W2150926065","https://openalex.org/W2166244392","https://openalex.org/W2171808845","https://openalex.org/W2259938310","https://openalex.org/W2494980014"],"related_works":["https://openalex.org/W2424092526","https://openalex.org/W2507790420","https://openalex.org/W2212710981","https://openalex.org/W2795223073","https://openalex.org/W4200376839","https://openalex.org/W2151543286","https://openalex.org/W2418239907","https://openalex.org/W2142890267","https://openalex.org/W4280600268","https://openalex.org/W2474086683"],"abstract_inverted_index":{"BACKGROUND:":[0],"Functional":[1],"genomic":[2,39,87,139],"and":[3,45,49,71,85,117,136,146],"epigenomic":[4,75,104,121],"research":[5],"relies":[6],"fundamentally":[7],"on":[8,118],"sequencing":[9],"based":[10],"methods":[11],"like":[12],"ChIP-seq":[13],"for":[14,43,68],"the":[15,101,108,111,125],"detection":[16],"of":[17,73,94,103,110],"DNA-protein":[18],"interactions.":[19],"These":[20],"techniques":[21],"return":[22],"large,":[23],"high":[24],"dimensional":[25],"data":[26,46,122],"sets":[27],"with":[28,96],"visually":[29],"complex":[30,52],"structures,":[31],"such":[32,141],"as":[33,142,155],"multi-modal":[34],"peaks":[35],"extended":[36],"over":[37],"large":[38],"regions.":[40],"Current":[41],"tools":[42],"visualisation":[44],"exploration":[47],"represent":[48],"leverage":[50],"these":[51],"features":[53,140],"only":[54],"to":[55,82,91],"a":[56,114,119],"limited":[57],"extent.":[58],"RESULTS:":[59],"We":[60,106],"present":[61],"DGW,":[62],"an":[63,156],"open":[64,157],"source":[65,158],"software":[66],"package":[67],"simultaneous":[69],"alignment":[70],"clustering":[72],"multiple":[74],"marks.":[76,105,151],"DGW":[77,133,152],"uses":[78],"Dynamic":[79],"Time":[80],"Warping":[81],"adaptively":[83],"rescale":[84],"align":[86],"distances":[88],"which":[89],"allows":[90],"group":[92],"regions":[93],"interest":[95],"similar":[97],"shapes,":[98],"thereby":[99],"capturing":[100],"structure":[102],"demonstrate":[107],"effectiveness":[109],"approach":[112],"in":[113],"simulation":[115],"study":[116],"real":[120],"set":[123],"from":[124,149],"ENCODE":[126],"project.":[127],"CONCLUSIONS:":[128],"Our":[129],"results":[130],"show":[131],"that":[132],"automatically":[134],"recognises":[135],"aligns":[137],"important":[138],"transcription":[143],"start":[144],"sites":[145,148],"splicing":[147],"histone":[150],"is":[153],"available":[154],"Python":[159],"package.":[160]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
