{"id":"https://openalex.org/W2519200480","doi":"https://doi.org/10.1186/s12859-016-1251-y","title":"BmncRNAdb: a comprehensive database of non-coding RNAs in the silkworm, Bombyx mori","display_name":"BmncRNAdb: a comprehensive database of non-coding RNAs in the silkworm, Bombyx mori","publication_year":2016,"publication_date":"2016-09-13","ids":{"openalex":"https://openalex.org/W2519200480","doi":"https://doi.org/10.1186/s12859-016-1251-y","mag":"2519200480","pmid":"https://pubmed.ncbi.nlm.nih.gov/27623959"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-1251-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1251-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1251-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1251-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101332556","display_name":"Qiuzhong Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qiu-Zhong Zhou","raw_affiliation_strings":["Laboratory of Evolutionary and Functional Genomics, School of Life Sciences, Chongqing University, Huxi Campus, No. 55 Daxuecheng South Rd., Shapingba, Chongqing, 401331, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Evolutionary and Functional Genomics, School of Life Sciences, Chongqing University, Huxi Campus, No. 55 Daxuecheng South Rd., Shapingba, Chongqing, 401331, China","institution_ids":["https://openalex.org/I158842170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072438077","display_name":"Bindan Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bindan Zhang","raw_affiliation_strings":["School of Economics and Business Administration, Chongqing University, Campus A, No. 174 Shazheng Rd., Shapingba, Chongqing, 400044, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Economics and Business Administration, Chongqing University, Campus A, No. 174 Shazheng Rd., Shapingba, Chongqing, 400044, China","institution_ids":["https://openalex.org/I158842170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111966514","display_name":"Quan\u2010You Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Quan-You Yu","raw_affiliation_strings":["Laboratory of Evolutionary and Functional Genomics, School of Life Sciences, Chongqing University, Huxi Campus, No. 55 Daxuecheng South Rd., Shapingba, Chongqing, 401331, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Evolutionary and Functional Genomics, School of Life Sciences, Chongqing University, Huxi Campus, No. 55 Daxuecheng South Rd., Shapingba, Chongqing, 401331, China","institution_ids":["https://openalex.org/I158842170"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003402946","display_name":"Ze Zhang","orcid":"https://orcid.org/0000-0002-9544-6683"},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ze Zhang","raw_affiliation_strings":["Laboratory of Evolutionary and Functional Genomics, School of Life Sciences, Chongqing University, Huxi Campus, No. 55 Daxuecheng South Rd., Shapingba, Chongqing, 401331, China. zezhang@cqu.edu.cn","Laboratory of Evolutionary and Functional Genomics, School of Life Sciences, Chongqing University, Huxi Campus, No. 55 Daxuecheng South Rd., Shapingba, Chongqing, 401331, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Evolutionary and Functional Genomics, School of Life Sciences, Chongqing University, Huxi Campus, No. 55 Daxuecheng South Rd., Shapingba, Chongqing, 401331, China. zezhang@cqu.edu.cn","institution_ids":[]},{"raw_affiliation_string":"Laboratory of Evolutionary and Functional Genomics, School of Life Sciences, Chongqing University, Huxi Campus, No. 55 Daxuecheng South Rd., Shapingba, Chongqing, 401331, China","institution_ids":["https://openalex.org/I158842170"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5101332556"],"corresponding_institution_ids":["https://openalex.org/I158842170"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.1251,"has_fulltext":true,"cited_by_count":50,"citation_normalized_percentile":{"value":0.85990151,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"17","issue":"1","first_page":"370","last_page":"370"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.8216999769210815,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.8216999769210815,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.07699999958276749,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.030700000002980232,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bombyx-mori","display_name":"Bombyx mori","score":0.8200622797012329},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6347861289978027},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46685105562210083},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4224264621734619},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3969303369522095},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.30853885412216187},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.21982091665267944}],"concepts":[{"id":"https://openalex.org/C2778487026","wikidata":"https://www.wikidata.org/wiki/Q134747","display_name":"Bombyx mori","level":3,"score":0.8200622797012329},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6347861289978027},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46685105562210083},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4224264621734619},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3969303369522095},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30853885412216187},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.21982091665267944}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012831","descriptor_name":"Bombyx","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012831","descriptor_name":"Bombyx","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012831","descriptor_name":"Bombyx","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-016-1251-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1251-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1251-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27623959","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27623959","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5022206","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5022206","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-1251-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1251-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1251-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2520223703","display_name":null,"funder_award_id":"31272363","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5308350222","display_name":null,"funder_award_id":"CYB14041","funder_id":"https://openalex.org/F4320335872","funder_display_name":"Chongqing Graduate Student Research Innovation Project"},{"id":"https://openalex.org/G6588092371","display_name":null,"funder_award_id":"2013AA102507","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335872","display_name":"Chongqing Graduate Student Research Innovation Project","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2519200480.pdf","grobid_xml":"https://content.openalex.org/works/W2519200480.grobid-xml"},"referenced_works_count":82,"referenced_works":["https://openalex.org/W609404933","https://openalex.org/W1797935096","https://openalex.org/W1851273992","https://openalex.org/W1960941312","https://openalex.org/W1967053567","https://openalex.org/W1968055625","https://openalex.org/W1968458420","https://openalex.org/W1970548357","https://openalex.org/W1977421929","https://openalex.org/W1986389909","https://openalex.org/W1991075461","https://openalex.org/W1993274055","https://openalex.org/W1994938163","https://openalex.org/W1994978035","https://openalex.org/W1998422171","https://openalex.org/W2005295487","https://openalex.org/W2017653670","https://openalex.org/W2024790592","https://openalex.org/W2024848067","https://openalex.org/W2029868997","https://openalex.org/W2032183472","https://openalex.org/W2033383739","https://openalex.org/W2036963953","https://openalex.org/W2039351422","https://openalex.org/W2044832480","https://openalex.org/W2047333953","https://openalex.org/W2060772907","https://openalex.org/W2061548680","https://openalex.org/W2065416213","https://openalex.org/W2068185235","https://openalex.org/W2073136316","https://openalex.org/W2075320162","https://openalex.org/W2076549807","https://openalex.org/W2076733759","https://openalex.org/W2077327925","https://openalex.org/W2085421027","https://openalex.org/W2087377443","https://openalex.org/W2091130596","https://openalex.org/W2092467693","https://openalex.org/W2094292925","https://openalex.org/W2096465161","https://openalex.org/W2096525273","https://openalex.org/W2097075232","https://openalex.org/W2100305481","https://openalex.org/W2102304447","https://openalex.org/W2108274915","https://openalex.org/W2111407873","https://openalex.org/W2118239133","https://openalex.org/W2118260473","https://openalex.org/W2119649249","https://openalex.org/W2119726708","https://openalex.org/W2120456037","https://openalex.org/W2120597842","https://openalex.org/W2129078669","https://openalex.org/W2138093837","https://openalex.org/W2147526198","https://openalex.org/W2148629421","https://openalex.org/W2149427050","https://openalex.org/W2149785901","https://openalex.org/W2151560512","https://openalex.org/W2151862116","https://openalex.org/W2153202041","https://openalex.org/W2154825888","https://openalex.org/W2157399331","https://openalex.org/W2158714788","https://openalex.org/W2163371087","https://openalex.org/W2165697084","https://openalex.org/W2166810745","https://openalex.org/W2169777381","https://openalex.org/W2170103155","https://openalex.org/W2172292848","https://openalex.org/W2201271353","https://openalex.org/W2209200250","https://openalex.org/W2239966924","https://openalex.org/W2313500346","https://openalex.org/W2415549799","https://openalex.org/W2418974633","https://openalex.org/W2739999456","https://openalex.org/W3143594093","https://openalex.org/W4230266413","https://openalex.org/W4236512047","https://openalex.org/W4237629094"],"related_works":["https://openalex.org/W2089574945","https://openalex.org/W2234761686","https://openalex.org/W2359410321","https://openalex.org/W1552239606","https://openalex.org/W2035603794","https://openalex.org/W1493651463","https://openalex.org/W3000970069","https://openalex.org/W3148238253","https://openalex.org/W2768919317","https://openalex.org/W2514914100"],"abstract_inverted_index":{"BACKGROUND:":[0],"Long":[1],"non-coding":[2],"RNAs":[3],"(lncRNAs)":[4],"may":[5],"play":[6],"critical":[7],"roles":[8],"in":[9,48,81,179],"a":[10,99,108,147,159],"wide":[11],"range":[12],"of":[13,16,30,131,150,163,173],"developmental":[14],"processes":[15],"higher":[17],"organisms.":[18],"Recently,":[19],"lncRNAs":[20,31,64,80,144,153,162],"have":[21,32,137],"been":[22,33],"widely":[23],"identified":[24,76,139],"across":[25],"eukaryotes":[26],"and":[27,71,77,101,114,140,145,154,166,176],"many":[28],"databases":[29],"developed":[34],"for":[35,111,124,169],"human,":[36],"mouse,":[37],"fruit":[38],"fly,":[39],"etc.":[40],"However,":[41],"there":[42],"is":[43,184],"rare":[44],"information":[45],"about":[46],"them":[47,97],"the":[49,66,82,120,128,142,151,164,170,174,180],"only":[50],"completely":[51],"domesticated":[52],"insect,":[53],"silkworm":[54,68,143,152,165,175],"(Bombyx":[55],"mori).":[56],"DESCRIPTION:":[57],"In":[58],"this":[59],"study,":[60],"we":[61,75,85,95],"systematically":[62,138],"scanned":[63],"using":[65],"available":[67,186],"RNA-seq":[69],"data":[70,112],"public":[72],"unigenes.":[73],"Finally,":[74],"collected":[78,87,141],"6281":[79],"silkworm.":[83],"Besides,":[84],"also":[86],"1986":[88],"microRNAs":[89],"(miRNAs)":[90],"from":[91],"previous":[92],"studies.":[93],"Then,":[94],"organized":[96],"into":[98,161],"comprehensive":[100,148],"web-based":[102],"database,":[103],"BmncRNAdb.":[104],"This":[105,156],"database":[106,149],"offers":[107],"user-friendly":[109],"interface":[110],"browse":[113],"online":[115,122],"analysis":[116],"as":[117,119],"well":[118],"three":[121],"tools":[123],"users":[125],"to":[126],"predict":[127],"target":[129],"genes":[130],"lncRNA":[132],"or":[133],"miRNA.":[134],"CONCLUSIONS:":[135],"We":[136],"constructed":[146],"miRNAs.":[155],"work":[157],"gives":[158],"glimpse":[160],"lays":[167],"foundations":[168],"ncRNAs":[171],"study":[172],"other":[177],"insects":[178],"future.":[181],"The":[182],"BmncRNAdb":[183],"freely":[185],"at":[187],"http://gene.cqu.edu.cn/BmncRNAdb/index.php":[188],".":[189]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
