{"id":"https://openalex.org/W2527996525","doi":"https://doi.org/10.1186/s12859-016-1214-3","title":"VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements","display_name":"VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements","publication_year":2016,"publication_date":"2016-10-01","ids":{"openalex":"https://openalex.org/W2527996525","doi":"https://doi.org/10.1186/s12859-016-1214-3","mag":"2527996525","pmid":"https://pubmed.ncbi.nlm.nih.gov/27766961"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-1214-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1214-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1214-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","doyens","jufo-1","ki-jl-1","medline","norway-2"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1214-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030533815","display_name":"Inimary T. Toby","orcid":"https://orcid.org/0000-0003-0820-3999","observed_orcids":["https://orcid.org/0000-0003-0820-3999"]},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Inimary T. Toby","raw_affiliation_strings":["Department of Clinical Sciences, UT Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX, 75390-9066, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Sciences, UT Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX, 75390-9066, USA","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024040294","display_name":"Mikhail K. Levin","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I100621029","display_name":"Bank of America","ror":"https://ror.org/006tvg625","country_code":"US","type":"other","lineage":["https://openalex.org/I100621029"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mikhail K. Levin","raw_affiliation_strings":["Bank of America Corporate Center, 100 North Tryon Street, Charlotte, NC, 28202, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bank of America Corporate Center, 100 North Tryon Street, Charlotte, NC, 28202, USA","institution_ids":["https://openalex.org/I100621029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110448407","display_name":"Edward A. Salinas","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edward A. Salinas","raw_affiliation_strings":["Broad Institute, 75 Ames Street, Cambridge, MA, 02142, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Broad Institute, 75 Ames Street, Cambridge, MA, 02142, USA","institution_ids":["https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078078996","display_name":"Scott Christley","orcid":"https://orcid.org/0000-0002-9889-1221","observed_orcids":["https://orcid.org/0000-0002-9889-1221"]},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott Christley","raw_affiliation_strings":["Department of Clinical Sciences, UT Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX, 75390-9066, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Sciences, UT Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX, 75390-9066, USA","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081245857","display_name":"Sanchita Bhattacharya","orcid":"https://orcid.org/0000-0002-3056-0733","observed_orcids":["https://orcid.org/0000-0002-3056-0733"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sanchita Bhattacharya","raw_affiliation_strings":["Institute for Computational Health Sciences, University of California San Francisco, Mission Hall, 550 16th Street, 4th Floor, Box 0110, San Francisco, CA, 94158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Computational Health Sciences, University of California San Francisco, Mission Hall, 550 16th Street, 4th Floor, Box 0110, San Francisco, CA, 94158, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087576955","display_name":"Felix J. Breden","orcid":"https://orcid.org/0000-0001-9762-6314","observed_orcids":["https://orcid.org/0000-0001-9762-6314"]},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Felix Breden","raw_affiliation_strings":["Department of Biological Sciences and The IRMACS Centre, Simon Fraser University, 8888 University Drive, Burnaby, V5A 1S6, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences and The IRMACS Centre, Simon Fraser University, 8888 University Drive, Burnaby, V5A 1S6, British Columbia, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052729243","display_name":"Adam Buntzman","orcid":"https://orcid.org/0000-0003-1067-4618","observed_orcids":["https://orcid.org/0000-0003-1067-4618"]},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Buntzman","raw_affiliation_strings":["Department of Immunobiology, University of Arizona School of Medicine, 1656 E. Mabel Street, P.O. Box 245221, Tucson, AZ, 85724-5221, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Immunobiology, University of Arizona School of Medicine, 1656 E. Mabel Street, P.O. Box 245221, Tucson, AZ, 85724-5221, USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036616875","display_name":"Brian Corrie","orcid":"https://orcid.org/0000-0003-3888-6495","observed_orcids":["https://orcid.org/0000-0003-3888-6495"]},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]},{"id":"https://openalex.org/I4210129688","display_name":"New Zealand eScience Infrastructure","ror":"https://ror.org/037aan677","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I154130895","https://openalex.org/I4210129688"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Brian Corrie","raw_affiliation_strings":["New Zealand eScience Infrastructure, University of Auckland, Level 10, 49 Symonds Street, Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"New Zealand eScience Infrastructure, University of Auckland, Level 10, 49 Symonds Street, Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895","https://openalex.org/I4210129688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051814524","display_name":"John M. Fonner","orcid":"https://orcid.org/0000-0003-4398-2916","observed_orcids":["https://orcid.org/0000-0003-4398-2916"]},"institutions":[{"id":"https://openalex.org/I4388891828","display_name":"Texas Advanced Computing Center","ror":"https://ror.org/00xg4bh43","country_code":null,"type":"facility","lineage":["https://openalex.org/I4388891828","https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Fonner","raw_affiliation_strings":["Texas Advanced Computing Center, Research Office Complex 1.101, J.J. Pickle Research Campus, Building 196, 10100 Burnet Road (R8700), Austin, TX, 78758-4497, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Texas Advanced Computing Center, Research Office Complex 1.101, J.J. Pickle Research Campus, Building 196, 10100 Burnet Road (R8700), Austin, TX, 78758-4497, USA","institution_ids":["https://openalex.org/I4388891828"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101622184","display_name":"Namita T. Gupta","orcid":"https://orcid.org/0000-0002-4517-1546","observed_orcids":["https://orcid.org/0000-0002-4517-1546"]},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Namita T. Gupta","raw_affiliation_strings":["Interdepartmental Program in Computational Biology and Bioinformatics, Yale University, 300 George Street, Suite 505, New Haven, CT, 06511, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interdepartmental Program in Computational Biology and Bioinformatics, Yale University, 300 George Street, Suite 505, New Haven, CT, 06511, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057060353","display_name":"Uri Hershberg","orcid":"https://orcid.org/0000-0002-6425-5980","observed_orcids":["https://orcid.org/0000-0002-6425-5980"]},"institutions":[{"id":"https://openalex.org/I72816309","display_name":"Drexel University","ror":"https://ror.org/04bdffz58","country_code":"US","type":"education","lineage":["https://openalex.org/I72816309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Uri Hershberg","raw_affiliation_strings":["School of Biomedical Engineering, Science and Health Systems and Department of Microbiology and Immunology, College of Medicine, Drexel University, 3141 Chestnut Street, Philadelphia, PA, 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, Science and Health Systems and Department of Microbiology and Immunology, College of Medicine, Drexel University, 3141 Chestnut Street, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I72816309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017601782","display_name":"Nishanth Marthandan","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Nishanth Marthandan","raw_affiliation_strings":["The IRMACS Centre (ASB 10905), Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The IRMACS Centre (ASB 10905), Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062643020","display_name":"Aaron M. Rosenfeld","orcid":"https://orcid.org/0000-0002-2266-0355","observed_orcids":["https://orcid.org/0000-0002-2266-0355"]},"institutions":[{"id":"https://openalex.org/I72816309","display_name":"Drexel University","ror":"https://ror.org/04bdffz58","country_code":"US","type":"education","lineage":["https://openalex.org/I72816309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aaron Rosenfeld","raw_affiliation_strings":["School of Biomedical Engineering, Science and Health Systems, Drexel University, 3141 Chestnut Street, Philadelphia, PA, 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, Science and Health Systems, Drexel University, 3141 Chestnut Street, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I72816309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029755765","display_name":"William H. Rounds","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William Rounds","raw_affiliation_strings":["Department of Neurology and Neurotherapeutics, UT Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX, 75390-9036, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurology and Neurotherapeutics, UT Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX, 75390-9036, USA","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112258904","display_name":"Florian Rubelt","orcid":"https://orcid.org/0000-0001-7593-5511","observed_orcids":["https://orcid.org/0000-0001-7593-5511"]},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Florian Rubelt","raw_affiliation_strings":["Stanford University School of Medicine, 279 Campus Drive, Stanford, CA, 94305-5101, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University School of Medicine, 279 Campus Drive, Stanford, CA, 94305-5101, USA","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054148594","display_name":"Walter Scarborough","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4388891828","display_name":"Texas Advanced Computing Center","ror":"https://ror.org/00xg4bh43","country_code":null,"type":"facility","lineage":["https://openalex.org/I4388891828","https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Walter Scarborough","raw_affiliation_strings":["Texas Advanced Computing Center, Research Office Complex 1.101, J.J. Pickle Research Campus, Building 196, 10100 Burnet Road (R8700), Austin, TX, 78758-4497, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Texas Advanced Computing Center, Research Office Complex 1.101, J.J. Pickle Research Campus, Building 196, 10100 Burnet Road (R8700), Austin, TX, 78758-4497, USA","institution_ids":["https://openalex.org/I4388891828"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045141972","display_name":"Jamie Kathleen Scott","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jamie K. Scott","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry and Faculty of Health Sciences, Simon Fraser University, Blusson Hall, Room 11300, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry and Faculty of Health Sciences, Simon Fraser University, Blusson Hall, Room 11300, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088058783","display_name":"Mohamed Uduman","orcid":"https://orcid.org/0000-0002-9725-0705","observed_orcids":["https://orcid.org/0000-0002-9725-0705"]},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohamed Uduman","raw_affiliation_strings":["Department of Pathology, Yale School of Medicine, 300 George Street, Suite 505, New Haven, CT, 06511, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, Yale School of Medicine, 300 George Street, Suite 505, New Haven, CT, 06511, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027728617","display_name":"Jason A. Vander Heiden","orcid":"https://orcid.org/0000-0002-1474-310X","observed_orcids":["https://orcid.org/0000-0002-1474-310X"]},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason A. Vander Heiden","raw_affiliation_strings":["Interdepartmental Program in Computational Biology and Bioinformatics, Yale University, 300 George Street, Suite 505, New Haven, CT, 06511, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interdepartmental Program in Computational Biology and Bioinformatics, Yale University, 300 George Street, Suite 505, New Haven, CT, 06511, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034262562","display_name":"Richard H. Scheuermann","orcid":"https://orcid.org/0000-0003-1355-892X","observed_orcids":["https://orcid.org/0000-0003-1355-892X"]},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]},{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard H. Scheuermann","raw_affiliation_strings":["Department of Pathology, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, USA","Division of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, 9420 Athena Circle, La Jolla, CA, 92037, USA","J. Craig Venter Institute, 4120 Capricorn Lane, La Jolla, CA, 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Division of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, 9420 Athena Circle, La Jolla, CA, 92037, USA","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"J. Craig Venter Institute, 4120 Capricorn Lane, La Jolla, CA, 92037, USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109079767","display_name":"Nancy L. Monson","orcid":"https://orcid.org/0000-0002-7175-7700","observed_orcids":["https://orcid.org/0000-0002-7175-7700"]},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nancy Monson","raw_affiliation_strings":["Department of Neurology and Neurotherapeutics, UT Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX, 75390-9036, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurology and Neurotherapeutics, UT Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX, 75390-9036, USA","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066562919","display_name":"Steven H. Kleinstein","orcid":"https://orcid.org/0000-0003-4957-1544","observed_orcids":["https://orcid.org/0000-0003-4957-1544"]},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven H. Kleinstein","raw_affiliation_strings":["Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA","Department of Pathology, Yale School of Medicine, 300 George Street, Suite 505, New Haven, CT, 06511, USA","Interdepartmental Program in Computational Biology and Bioinformatics, Yale University, 300 George Street, Suite 505, New Haven, CT, 06511, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Department of Pathology, Yale School of Medicine, 300 George Street, Suite 505, New Haven, CT, 06511, USA","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Interdepartmental Program in Computational Biology and Bioinformatics, Yale University, 300 George Street, Suite 505, New Haven, CT, 06511, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090203652","display_name":"Lindsay Grey Cowell","orcid":"https://orcid.org/0000-0003-1617-8244","observed_orcids":["https://orcid.org/0000-0003-1617-8244"]},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lindsay G. Cowell","raw_affiliation_strings":["Department of Clinical Sciences, UT Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX, 75390-9066, USA. lindsay.cowell@utsouthwestern.edu","Department of Clinical Sciences, UT Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX, 75390-9066, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Sciences, UT Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX, 75390-9066, USA. lindsay.cowell@utsouthwestern.edu","institution_ids":["https://openalex.org/I867280407"]},{"raw_affiliation_string":"Department of Clinical Sciences, UT Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX, 75390-9066, USA","institution_ids":["https://openalex.org/I867280407"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":16,"corresponding_author_ids":["https://openalex.org/A5090203652"],"corresponding_institution_ids":["https://openalex.org/I867280407"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":2990,"currency":"USD","value_usd":2990},"fwci":1.2275,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.80217741,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"17","issue":"S13","first_page":"333","last_page":"333"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.20739999413490295,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.20739999413490295,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.16439999639987946,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.16300000250339508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/file-format-standardization","display_name":"file format standardization","score":0.8420000076293945},{"id":"https://openalex.org/keywords/v-d-j-recombination","display_name":"V(D)J recombination","score":0.9649999737739563},{"id":"https://openalex.org/keywords/immune-repertoire","display_name":"immune repertoire","score":0.7609999775886536},{"id":"https://openalex.org/keywords/antibody-repertoire","display_name":"antibody repertoire","score":0.5339999794960022},{"id":"https://openalex.org/keywords/germline-gene-segments","display_name":"germline gene segments","score":0.6840000152587891}],"concepts":[{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.665701150894165},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.5755870938301086},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5132145881652832},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5077346563339233},{"id":"https://openalex.org/C103474210","wikidata":"https://www.wikidata.org/wiki/Q142851","display_name":"Immune receptor","level":3,"score":0.4551215171813965},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.4219781458377838},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3528655171394348},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25244057178497314},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.22405776381492615},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1120295524597168},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.06816589832305908}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011971","descriptor_name":"Receptors, Immunologic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011971","descriptor_name":"Receptors, Immunologic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011971","descriptor_name":"Receptors, Immunologic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060152","descriptor_name":"V(D)J Recombination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060152","descriptor_name":"V(D)J Recombination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060152","descriptor_name":"V(D)J Recombination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-016-1214-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1214-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1214-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","doyens","jufo-1","ki-jl-1","medline","norway-2"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27766961","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27766961","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:repository.arizona.edu:10150/624652","is_oa":true,"landing_page_url":"http://hdl.handle.net/10150/624652","pdf_url":null,"source":{"id":"https://openalex.org/S4306400271","display_name":"UA Campus Repository (The University of Arizona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I138006243","host_organization_name":"University of Arizona","host_organization_lineage":["https://openalex.org/I138006243"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt1288x9gb","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/1288x9gb","pdf_url":"https://escholarship.org/content/qt1288x9gb/qt1288x9gb.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, vol 17, iss Suppl 13","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5073965","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5073965","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-1214-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1214-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1214-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","doyens","jufo-1","ki-jl-1","medline","norway-2"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1215573001","display_name":null,"funder_award_id":"AI104739","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G1244551101","display_name":null,"funder_award_id":"T15LM007056","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G1425971015","display_name":null,"funder_award_id":"P01AI106697","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G1658833210","display_name":null,"funder_award_id":"HHSN272201200028C","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G1925309880","display_name":null,"funder_award_id":"AI090019","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G2794496480","display_name":null,"funder_award_id":"HHSN272201200028C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3280257","display_name":null,"funder_award_id":"R01AI097403","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G399281341","display_name":null,"funder_award_id":"T-15-LM07056","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G4339945631","display_name":null,"funder_award_id":"R01-AI104739","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G442201000","display_name":null,"funder_award_id":"U19-AI090019","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G5276645557","display_name":null,"funder_award_id":"AI097403","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G9000078178","display_name":null,"funder_award_id":"U19 AI090019","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G9000125282","display_name":null,"funder_award_id":"AI090019","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G9000145752","display_name":null,"funder_award_id":"AI104739","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G9000198169","display_name":null,"funder_award_id":"T15 LM07056","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G9000225850","display_name":null,"funder_award_id":"R01-AI104739","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306799","display_name":"Pharmaceutical Research and Manufacturers of America Foundation","ror":"https://ror.org/01z88k350"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2527996525.pdf","grobid_xml":"https://content.openalex.org/works/W2527996525.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W135571511","https://openalex.org/W1436270903","https://openalex.org/W1506890399","https://openalex.org/W1570756084","https://openalex.org/W1631719479","https://openalex.org/W1802312377","https://openalex.org/W1890359263","https://openalex.org/W1909049753","https://openalex.org/W1974596630","https://openalex.org/W1987971789","https://openalex.org/W1990386528","https://openalex.org/W1993928780","https://openalex.org/W2010295342","https://openalex.org/W2025738474","https://openalex.org/W2029525307","https://openalex.org/W2040293984","https://openalex.org/W2042786738","https://openalex.org/W2048002377","https://openalex.org/W2049804312","https://openalex.org/W2067001279","https://openalex.org/W2070646447","https://openalex.org/W2103129584","https://openalex.org/W2105195133","https://openalex.org/W2109911015","https://openalex.org/W2111098506","https://openalex.org/W2113392525","https://openalex.org/W2114937727","https://openalex.org/W2129390819","https://openalex.org/W2136169373","https://openalex.org/W2138067488","https://openalex.org/W2138968719","https://openalex.org/W2139968053","https://openalex.org/W2141312574","https://openalex.org/W2151558930","https://openalex.org/W2165567657","https://openalex.org/W2172403535","https://openalex.org/W2175702062","https://openalex.org/W2271139250","https://openalex.org/W2295435170","https://openalex.org/W2310172832","https://openalex.org/W2578150941"],"related_works":["https://openalex.org/W1972945471","https://openalex.org/W2357948923","https://openalex.org/W4313472242","https://openalex.org/W2332159055","https://openalex.org/W2030500189","https://openalex.org/W2419188526","https://openalex.org/W2144422987","https://openalex.org/W4211132779","https://openalex.org/W2121820331","https://openalex.org/W2527996525"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,42,228,253,278,299],"genes":[2,47],"that":[3],"produce":[4],"antibodies":[5],"and":[6,73,95,142,163,170,190,267,271,289,302],"the":[7,61,67,116,135,172,193,247,273,291,297,313,317],"immune":[8,62,76,87,139],"receptors":[9],"expressed":[10],"on":[11],"lymphocytes":[12],"are":[13,19,304],"not":[14],"germline":[15,175],"encoded;":[16],"rather,":[17],"they":[18],"somatically":[20],"generated":[21],"in":[22,48,55,91,101,109,115,185,249,265,315],"each":[23,178],"developing":[24,316],"lymphocyte":[25],"by":[26,122,260],"a":[27,52,123,186,219,233,261],"process":[28],"called":[29],"V(D)J":[30,64,155,168,225,239,287],"recombination,":[31],"which":[32],"assembles":[33],"specific,":[34],"independent":[35],"gene":[36],"segments":[37],"into":[38],"mature":[39],"composite":[40,46],"genes.":[41],"full":[43],"set":[44],"of":[45,70,83,86,112,125,130,138,174,179,246,293],"an":[49,79,110,250],"individual":[50],"at":[51],"single":[53],"point":[54],"time":[56],"is":[57,66,89,146,258],"referred":[58],"to":[59,166,206,242,284],"as":[60,161,321,323],"repertoire.":[63],"recombination":[65],"distinguishing":[68],"feature":[69],"adaptive":[71],"immunity":[72],"enables":[74],"effective":[75],"responses":[77],"against":[78],"essentially":[80],"infinite":[81],"array":[82],"antigens.":[84],"Characterization":[85],"repertoires":[88],"critical":[90],"both":[92],"basic":[93],"research":[94,113],"clinical":[96],"contexts.":[97],"Recent":[98],"technological":[99],"advances":[100],"repertoire":[102,131,140],"profiling":[103,141],"via":[104],"high-throughput":[105],"sequencing":[106,132],"have":[107],"resulted":[108],"explosion":[111],"activity":[114],"field.":[117],"This":[118],"has":[119],"been":[120],"accompanied":[121,259],"proliferation":[124],"software":[126,159,181],"tools":[127,182],"for":[128,151,204,223,237,269],"analysis":[129,143,169,226,240,288],"data.":[133],"Despite":[134],"widespread":[136],"use":[137],"software,":[144],"there":[145],"currently":[147],"no":[148],"standardized":[149,220,235],"format":[150,222,236,256,319],"output":[152],"files":[153],"from":[154,306,312],"analysis.":[156],"Researchers":[157],"utilize":[158],"such":[160],"IgBLAST":[162],"IMGT/High":[164],"V-QUEST":[165],"perform":[167,207],"infer":[171],"structure":[173],"rearrangements.":[176],"However,":[177],"these":[180],"produces":[183],"results":[184,248],"different":[187,197,238],"file":[188,221,255,275,318],"format,":[189,230],"can":[191],"annotate":[192],"same":[194],"result":[195],"using":[196],"labels.":[198],"These":[199],"differences":[200],"make":[201],"it":[202],"challenging":[203],"users":[205,283],"additional":[208],"downstream":[209,244],"analyses.":[210],"RESULTS:":[211],"To":[212],"help":[213],"address":[214],"this":[215],"problem,":[216],"we":[217],"propose":[218],"representing":[224],"results.":[227],"proposed":[229],"VDJML,":[231],"provides":[232],"common":[234],"applications":[241],"facilitate":[243,290],"processing":[245],"application-agnostic":[251],"manner.":[252],"VDJML":[254,274,279,300],"specification":[257],"support":[262],"library,":[263],"written":[264],"C++":[266],"Python,":[268],"reading":[270],"writing":[272],"format.":[276],"CONCLUSIONS:":[277],"suite":[280,301],"will":[281],"allow":[282],"streamline":[285],"their":[286],"sharing":[292],"scientific":[294],"knowledge":[295],"within":[296],"community.":[298],"documentation":[303],"available":[305],"https://vdjserver.org/vdjml/":[307],".":[308],"We":[309],"welcome":[310],"participation":[311],"community":[314],"standard,":[320],"well":[322],"code":[324],"contributions.":[325]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1}],"updated_date":"2026-09-22T06:50:58.402377","created_date":"2025-10-10T00:00:00"}
