{"id":"https://openalex.org/W2511427598","doi":"https://doi.org/10.1186/s12859-016-1211-6","title":"A hybrid computational strategy to address WGS variant analysis in &gt;5000 samples","display_name":"A hybrid computational strategy to address WGS variant analysis in &gt;5000 samples","publication_year":2016,"publication_date":"2016-09-10","ids":{"openalex":"https://openalex.org/W2511427598","doi":"https://doi.org/10.1186/s12859-016-1211-6","mag":"2511427598","pmid":"https://pubmed.ncbi.nlm.nih.gov/27612449"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-1211-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1211-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1211-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1211-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049887912","display_name":"Zhuoyi Huang","orcid":"https://orcid.org/0000-0001-9149-295X"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I4210162370","display_name":"Baylor Genetics","ror":"https://ror.org/05bxjx840","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210162370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhuoyi Huang","raw_affiliation_strings":["Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA","Human Genome Sequencing Center, Baylor College of Medicine, Houston, USA"],"raw_orcid":"https://orcid.org/0000-0001-9149-295X","affiliations":[{"raw_affiliation_string":"Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA","institution_ids":["https://openalex.org/I181547552"]},{"raw_affiliation_string":"Human Genome Sequencing Center, Baylor College of Medicine, Houston, USA","institution_ids":["https://openalex.org/I4210162370","https://openalex.org/I181547552"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001987487","display_name":"Navin Rustagi","orcid":null},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I4210162370","display_name":"Baylor Genetics","ror":"https://ror.org/05bxjx840","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210162370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Navin Rustagi","raw_affiliation_strings":["Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA","Human Genome Sequencing Center, Baylor College of Medicine, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA","institution_ids":["https://openalex.org/I181547552"]},{"raw_affiliation_string":"Human Genome Sequencing Center, Baylor College of Medicine, Houston, USA","institution_ids":["https://openalex.org/I4210162370","https://openalex.org/I181547552"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077076177","display_name":"Narayanan Veeraraghavan","orcid":"https://orcid.org/0000-0001-5986-4880"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I4210162370","display_name":"Baylor Genetics","ror":"https://ror.org/05bxjx840","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210162370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Narayanan Veeraraghavan","raw_affiliation_strings":["Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA","Human Genome Sequencing Center, Baylor College of Medicine, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA","institution_ids":["https://openalex.org/I181547552"]},{"raw_affiliation_string":"Human Genome Sequencing Center, Baylor College of Medicine, Houston, USA","institution_ids":["https://openalex.org/I4210162370","https://openalex.org/I181547552"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071154269","display_name":"Andrew Carroll","orcid":"https://orcid.org/0000-0002-4824-6689"},"institutions":[{"id":"https://openalex.org/I4210130836","display_name":"DNAnexus (United States)","ror":"https://ror.org/043pjwk57","country_code":"US","type":"company","lineage":["https://openalex.org/I4210130836"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Carroll","raw_affiliation_strings":["DNAnexus, Mountain View, CA, USA","DNAnexus, Mountain View, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DNAnexus, Mountain View, CA, USA","institution_ids":["https://openalex.org/I4210130836"]},{"raw_affiliation_string":"DNAnexus, Mountain View, USA","institution_ids":["https://openalex.org/I4210130836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109398751","display_name":"Richard Gibbs","orcid":null},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I4210162370","display_name":"Baylor Genetics","ror":"https://ror.org/05bxjx840","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210162370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard Gibbs","raw_affiliation_strings":["Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA","Human Genome Sequencing Center, Baylor College of Medicine, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA","institution_ids":["https://openalex.org/I181547552"]},{"raw_affiliation_string":"Human Genome Sequencing Center, Baylor College of Medicine, Houston, USA","institution_ids":["https://openalex.org/I4210162370","https://openalex.org/I181547552"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044048476","display_name":"Eric Boerwinkle","orcid":"https://orcid.org/0000-0001-8813-0544"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I4210162370","display_name":"Baylor Genetics","ror":"https://ror.org/05bxjx840","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210162370"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric Boerwinkle","raw_affiliation_strings":["Human Genetics Center, University of Texas Health Science Center, Houston, TX, USA","Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA","Human Genetics Center, University of Texas Health Science Center, Houston, USA","Human Genome Sequencing Center, Baylor College of Medicine, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Genetics Center, University of Texas Health Science Center, Houston, TX, USA","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA","institution_ids":["https://openalex.org/I181547552"]},{"raw_affiliation_string":"Human Genetics Center, University of Texas Health Science Center, Houston, USA","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Human Genome Sequencing Center, Baylor College of Medicine, Houston, USA","institution_ids":["https://openalex.org/I4210162370","https://openalex.org/I181547552"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067995943","display_name":"Manjunath Gorentla Venkata","orcid":"https://orcid.org/0000-0002-5282-1682"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Manjunath Gorentla Venkata","raw_affiliation_strings":["Oak Ridge National Laboratory, Oak Ridge, TN, USA","Oak Ridge National Laboratory, Oak Ridge, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oak Ridge National Laboratory, Oak Ridge, TN, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Oak Ridge National Laboratory, Oak Ridge, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108379172","display_name":"Fuli Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I4210162370","display_name":"Baylor Genetics","ror":"https://ror.org/05bxjx840","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210162370"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Fuli Yu","raw_affiliation_strings":["Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA. fyu@bcm.edu","Human Genome Sequencing Center, Baylor College of Medicine, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA. fyu@bcm.edu","institution_ids":["https://openalex.org/I181547552"]},{"raw_affiliation_string":"Human Genome Sequencing Center, Baylor College of Medicine, Houston, USA","institution_ids":["https://openalex.org/I4210162370","https://openalex.org/I181547552"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5108379172"],"corresponding_institution_ids":["https://openalex.org/I181547552","https://openalex.org/I4210162370"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.7778,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.87018554,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"17","issue":"1","first_page":"361","last_page":"361"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.6062999963760376,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.6062999963760376,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.35350000858306885,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.02160000056028366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.711475133895874},{"id":"https://openalex.org/keywords/ibm","display_name":"IBM","score":0.7039793133735657},{"id":"https://openalex.org/keywords/oak-ridge-national-laboratory","display_name":"Oak Ridge National Laboratory","score":0.6929363012313843},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.48157405853271484},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.48085981607437134},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.42347362637519836},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.41644108295440674},{"id":"https://openalex.org/keywords/imputation","display_name":"Imputation (statistics)","score":0.4117090106010437},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3602694272994995},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3358748257160187},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.32302403450012207},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.28795668482780457},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28732728958129883},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.28384071588516235},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2205638885498047},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.12656036019325256},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10904622077941895},{"id":"https://openalex.org/keywords/missing-data","display_name":"Missing data","score":0.09508121013641357}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.711475133895874},{"id":"https://openalex.org/C70388272","wikidata":"https://www.wikidata.org/wiki/Q5968558","display_name":"IBM","level":2,"score":0.7039793133735657},{"id":"https://openalex.org/C2775907726","wikidata":"https://www.wikidata.org/wiki/Q714439","display_name":"Oak Ridge National Laboratory","level":2,"score":0.6929363012313843},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.48157405853271484},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.48085981607437134},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.42347362637519836},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.41644108295440674},{"id":"https://openalex.org/C58041806","wikidata":"https://www.wikidata.org/wiki/Q1660484","display_name":"Imputation (statistics)","level":3,"score":0.4117090106010437},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3602694272994995},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3358748257160187},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.32302403450012207},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.28795668482780457},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28732728958129883},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.28384071588516235},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2205638885498047},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.12656036019325256},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10904622077941895},{"id":"https://openalex.org/C9357733","wikidata":"https://www.wikidata.org/wiki/Q6878417","display_name":"Missing data","level":2,"score":0.09508121013641357},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C185544564","wikidata":"https://www.wikidata.org/wiki/Q81197","display_name":"Nuclear physics","level":1,"score":0.0},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-016-1211-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1211-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1211-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27612449","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27612449","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3985035","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5018196","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:osti.gov:1565524","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1565524","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1618528","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1618528","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1186/s12859-016-1211-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1211-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1211-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6000000238418579,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1243299691","display_name":null,"funder_award_id":"HHSN268201100007C","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G1420454791","display_name":null,"funder_award_id":"HHSN268201100009C","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G1460387277","display_name":null,"funder_award_id":"HHSN268201100012C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1489425746","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1528409558","display_name":null,"funder_award_id":"No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1645119126","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G173303992","display_name":null,"funder_award_id":"HHSN268201100011C","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G2204534856","display_name":null,"funder_award_id":"HHSN268201100008C","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G2548373799","display_name":null,"funder_award_id":"HHSN268201100006C","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G2584197162","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G301743239","display_name":null,"funder_award_id":"HHSN268201100008C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3026431643","display_name":null,"funder_award_id":"R01 HG008115","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3049477530","display_name":null,"funder_award_id":"Contract No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3114902838","display_name":null,"funder_award_id":"HHSN268201100005C","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G3152385821","display_name":null,"funder_award_id":"HHSN268201100006C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3462919067","display_name":null,"funder_award_id":"HHSN268201100010C","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G4200864717","display_name":null,"funder_award_id":"HHSN268201100007C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4423657506","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G4433041303","display_name":null,"funder_award_id":"HG008115","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4957472368","display_name":null,"funder_award_id":". DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5053595415","display_name":null,"funder_award_id":"HHSN268201100005C, HHSN268201100006C, HHSN268201100007C, HHSN268201100008C, HHSN268201100009C, HHSN268201100010C, HHSN268201100011C, and HHSN268201100012C","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G5074086979","display_name":null,"funder_award_id":"HHSN268201100011C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6195637971","display_name":null,"funder_award_id":"HHSN268201100010C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6486853205","display_name":null,"funder_award_id":"Contract No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G6552090923","display_name":null,"funder_award_id":"HHSN268201100009C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6865635144","display_name":null,"funder_award_id":"HHSN268201100005C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6911681599","display_name":null,"funder_award_id":"No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7995982022","display_name":null,"funder_award_id":"DE-AC05","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8258276203","display_name":null,"funder_award_id":"HHSN268201100012C","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G8269158468","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8906985441","display_name":null,"funder_award_id":"00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320309647","display_name":"School of Medicine, Boston University","ror":"https://ror.org/05qwgg493"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320338287","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2511427598.pdf","grobid_xml":"https://content.openalex.org/works/W2511427598.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1493428480","https://openalex.org/W1578830280","https://openalex.org/W1907868928","https://openalex.org/W1909034474","https://openalex.org/W1974575979","https://openalex.org/W1976668556","https://openalex.org/W1988345092","https://openalex.org/W1990073900","https://openalex.org/W1993660990","https://openalex.org/W2024872854","https://openalex.org/W2043211502","https://openalex.org/W2050243183","https://openalex.org/W2061043894","https://openalex.org/W2064050001","https://openalex.org/W2083384274","https://openalex.org/W2104549677","https://openalex.org/W2104846587","https://openalex.org/W2106333302","https://openalex.org/W2107549082","https://openalex.org/W2115885537","https://openalex.org/W2116831158","https://openalex.org/W2119180969","https://openalex.org/W2121762798","https://openalex.org/W2131016694","https://openalex.org/W2139224067","https://openalex.org/W2142563181","https://openalex.org/W2148864810","https://openalex.org/W2151286417","https://openalex.org/W2161197885","https://openalex.org/W2190569576","https://openalex.org/W2230548884","https://openalex.org/W2547013679","https://openalex.org/W2731507867","https://openalex.org/W2827308506","https://openalex.org/W2913924416","https://openalex.org/W4235448192","https://openalex.org/W4242416368"],"related_works":["https://openalex.org/W4250204583","https://openalex.org/W2030649016","https://openalex.org/W4205924385","https://openalex.org/W1510668762","https://openalex.org/W3029506464","https://openalex.org/W3126131865","https://openalex.org/W2384867379","https://openalex.org/W4385071743","https://openalex.org/W2279788230","https://openalex.org/W2251285835"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,23,195,271],"decreasing":[2],"costs":[3],"of":[4,18,25,33,106,150,155,179,215,241,244,284,287,297,304,331],"sequencing":[5,21],"are":[6,28],"driving":[7],"the":[8,31,45,233,255,267,290,329],"need":[9],"for":[10,94,122,159,232,238,254,306],"cost":[11,316],"effective":[12,317],"and":[13,49,64,110,128,145,177,202,224,247,249,257,279,318],"real":[14],"time":[15],"variant":[16,60,67,92,97,126],"calling":[17,61,68,81,127,240,303],"whole":[19,182,298],"genome":[20,183,299],"data.":[22],"scale":[24,58,73,124,132],"these":[26],"projects":[27],"far":[29],"beyond":[30],"capacity":[32],"typical":[34],"computing":[35,103,114,324],"resources":[36],"available":[37],"with":[38,142,294],"most":[39],"research":[40],"labs.":[41],"Other":[42],"infrastructures":[43],"like":[44],"cloud":[46,107],"AWS":[47,235],"environment":[48],"supercomputers":[50,109,251],"also":[51],"have":[52],"limitations":[53],"due":[54],"to":[55,72,75,134],"which":[56,100,130,173],"large":[57,76,123],"joint":[59,80,125,174,239,302],"becomes":[62],"infeasible,":[63],"infrastructure":[65,104],"specific":[66],"strategies":[69],"either":[70],"fail":[71],"up":[74,133],"datasets":[77],"or":[78],"abandon":[79],"strategies.":[82],"RESULTS:":[83],"We":[84,116,204],"present":[85,117,153],"a":[86,118,148,208,282,314],"high":[87,112,143],"throughput":[88],"framework":[89],"including":[90],"multiple":[91],"callers":[93,196],"single":[95],"nucleotide":[96],"(SNV)":[98],"calling,":[99,175],"leverages":[101],"hybrid":[102],"consisting":[105],"AWS,":[108,207],"local":[111,268],"performance":[113],"infrastructures.":[115],"novel":[119],"binning":[120],"approach":[121],"imputation":[129,176,256],"can":[131,310],"over":[135,180],"10,000":[136],"samples":[137,184],"while":[138],"producing":[139],"SNV":[140],"callsets":[141],"sensitivity":[144],"specificity.":[146],"As":[147],"proof":[149],"principle,":[151],"we":[152],"results":[154],"analysis":[156],"on":[157,266,328],"Cohorts":[158],"Heart":[160],"And":[161],"Aging":[162],"Research":[163],"in":[164,172,187,313],"Genomic":[165],"Epidemiology":[166],"(CHARGE)":[167],"WGS":[168],"freeze":[169],"3":[170],"dataset":[171],"phasing":[178,258],"5300":[181],"was":[185,236],"produced":[186],"under":[188],"6":[189,285],"weeks":[190],"using":[191,322],"four":[192],"state-of-the-art":[193],"callers.":[194],"used":[197,205,237,253,274],"were":[198,252,263],"SNPTools,":[199],"GATK-HaplotypeCaller,":[200],"GATK-UnifiedGenotyper":[201],"GotCloud.":[203],"Amazon":[206],"4000-core":[209],"in-house":[210],"cluster":[211],"at":[212,222,226],"Baylor":[213],"College":[214],"Medicine,":[216],"IBM":[217],"power":[218],"PC":[219],"Blue":[220],"BioU":[221],"Rice":[223,250],"Rhea":[225],"Oak":[227],"Ridge":[228],"National":[229],"Laboratory":[230],"(ORNL)":[231],"computation.":[234],"180":[242],"TB":[243,286],"BAM":[245],"files,":[246],"ORNL":[248],"step.":[259],"All":[260],"other":[261],"steps":[262],"carried":[264],"out":[265],"compute":[269],"cluster.":[270],"entire":[272],"operation":[273],"5.2":[275],"million":[276],"core":[277],"hours":[278],"only":[280],"transferred":[281],"total":[283],"data":[288,309],"across":[289],"platforms.":[291],"CONCLUSIONS:":[292],"Even":[293],"increasing":[295],"sizes":[296],"datasets,":[300],"ensemble":[301],"SNVs":[305],"low":[307],"coverage":[308],"be":[311],"accomplished":[312],"scalable,":[315],"fast":[319],"manner":[320],"by":[321],"heterogeneous":[323],"platforms":[325],"without":[326],"compromising":[327],"quality":[330],"variants.":[332]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-06-14T07:44:22.658603","created_date":"2016-09-16T00:00:00"}
