{"id":"https://openalex.org/W2515074027","doi":"https://doi.org/10.1186/s12859-016-1185-4","title":"Prediction of redox-sensitive cysteines using sequential distance and other sequence-based features","display_name":"Prediction of redox-sensitive cysteines using sequential distance and other sequence-based features","publication_year":2016,"publication_date":"2016-08-24","ids":{"openalex":"https://openalex.org/W2515074027","doi":"https://doi.org/10.1186/s12859-016-1185-4","mag":"2515074027","pmid":"https://pubmed.ncbi.nlm.nih.gov/27553667"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-1185-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1185-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1185-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1185-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103114992","display_name":"Ming\u2010an Sun","orcid":"https://orcid.org/0000-0002-4661-3027"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ming-an Sun","raw_affiliation_strings":["State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, People's Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, People's Republic of China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100358828","display_name":"Qing Zhang","orcid":"https://orcid.org/0000-0003-3281-9101"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qing Zhang","raw_affiliation_strings":["State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, People's Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, People's Republic of China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103072026","display_name":"Yejun Wang","orcid":"https://orcid.org/0000-0003-4030-0027"},"institutions":[{"id":"https://openalex.org/I4210145292","display_name":"Shenzhen University Health Science Center","ror":"https://ror.org/04yjbr930","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210145292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yejun Wang","raw_affiliation_strings":["Department of Cell Biology and Genetics, School of Basic Medical Sciences, Shenzhen University Health Science Center, Nanhai Ave 3688, Shenzhen, 518060, People's Republic of China"],"affiliations":[{"raw_affiliation_string":"Department of Cell Biology and Genetics, School of Basic Medical Sciences, Shenzhen University Health Science Center, Nanhai Ave 3688, Shenzhen, 518060, People's Republic of China","institution_ids":["https://openalex.org/I4210145292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011297565","display_name":"Wei Ge","orcid":"https://orcid.org/0000-0002-4296-1585"},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Wei Ge","raw_affiliation_strings":["Centre of Reproduction, Development and Aging, Faculty of Health Sciences, University of Macau, Taipa, Macau, People's Republic of China"],"affiliations":[{"raw_affiliation_string":"Centre of Reproduction, Development and Aging, Faculty of Health Sciences, University of Macau, Taipa, Macau, People's Republic of China","institution_ids":["https://openalex.org/I204512498"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026408588","display_name":"Dianjing Guo","orcid":"https://orcid.org/0009-0003-1850-0863"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dianjing Guo","raw_affiliation_strings":["State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, People's Republic of China. djguo@cuhk.edu.hk","State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, People's Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, People's Republic of China. djguo@cuhk.edu.hk","institution_ids":[]},{"raw_affiliation_string":"State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, People's Republic of China","institution_ids":["https://openalex.org/I177725633"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5103114992"],"corresponding_institution_ids":["https://openalex.org/I177725633"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.5545,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.88486902,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"17","issue":"1","first_page":"316","last_page":"316"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11561","display_name":"Protein Hydrolysis and Bioactive Peptides","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/redox","display_name":"Redox","score":0.7982292175292969},{"id":"https://openalex.org/keywords/cysteine","display_name":"Cysteine","score":0.7039111256599426},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.498760461807251},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.41999268531799316},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34253352880477905},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2605937421321869},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.22385555505752563},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22112607955932617},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.167544424533844},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.1189110279083252}],"concepts":[{"id":"https://openalex.org/C55904794","wikidata":"https://www.wikidata.org/wiki/Q82682","display_name":"Redox","level":2,"score":0.7982292175292969},{"id":"https://openalex.org/C2779201268","wikidata":"https://www.wikidata.org/wiki/Q186474","display_name":"Cysteine","level":3,"score":0.7039111256599426},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.498760461807251},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.41999268531799316},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34253352880477905},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2605937421321869},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.22385555505752563},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22112607955932617},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.167544424533844},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.1189110279083252},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003545","descriptor_name":"Cysteine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003545","descriptor_name":"Cysteine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003545","descriptor_name":"Cysteine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010084","descriptor_name":"Oxidation-Reduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010084","descriptor_name":"Oxidation-Reduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010084","descriptor_name":"Oxidation-Reduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-016-1185-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1185-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1185-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27553667","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27553667","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4995733","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4995733","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-1185-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1185-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1185-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2277307332","display_name":null,"funder_award_id":"JCYJ20140425184428456","funder_id":"https://openalex.org/F4320322942","funder_display_name":"Chinese University of Hong Kong"},{"id":"https://openalex.org/G3718769366","display_name":null,"funder_award_id":"Shenzhen","funder_id":"https://openalex.org/F4320322942","funder_display_name":"Chinese University of Hong Kong"}],"funders":[{"id":"https://openalex.org/F4320320955","display_name":"Hong Kong Baptist University","ror":"https://ror.org/0145fw131"},{"id":"https://openalex.org/F4320322942","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48"},{"id":"https://openalex.org/F4320329174","display_name":"Shenzhen Municipal Science and Technology Innovation Council","ror":"https://ror.org/017n8df75"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2515074027.pdf","grobid_xml":"https://content.openalex.org/works/W2515074027.grobid-xml"},"referenced_works_count":68,"referenced_works":["https://openalex.org/W24553703","https://openalex.org/W273955616","https://openalex.org/W1507690786","https://openalex.org/W1513618424","https://openalex.org/W1603314972","https://openalex.org/W1975189886","https://openalex.org/W1988256563","https://openalex.org/W1989644067","https://openalex.org/W1992176190","https://openalex.org/W1992255549","https://openalex.org/W1992326565","https://openalex.org/W1998408986","https://openalex.org/W2000038034","https://openalex.org/W2001499411","https://openalex.org/W2002049404","https://openalex.org/W2009808081","https://openalex.org/W2011263386","https://openalex.org/W2014433643","https://openalex.org/W2020089616","https://openalex.org/W2020285880","https://openalex.org/W2026582002","https://openalex.org/W2036760275","https://openalex.org/W2038738759","https://openalex.org/W2039890138","https://openalex.org/W2046860937","https://openalex.org/W2056357865","https://openalex.org/W2057998833","https://openalex.org/W2058292371","https://openalex.org/W2060663826","https://openalex.org/W2065104453","https://openalex.org/W2065773243","https://openalex.org/W2076367848","https://openalex.org/W2077841776","https://openalex.org/W2081934621","https://openalex.org/W2082569982","https://openalex.org/W2085094809","https://openalex.org/W2085298128","https://openalex.org/W2096495474","https://openalex.org/W2097150498","https://openalex.org/W2101444644","https://openalex.org/W2102472842","https://openalex.org/W2105323667","https://openalex.org/W2107772748","https://openalex.org/W2109681606","https://openalex.org/W2109766743","https://openalex.org/W2113714326","https://openalex.org/W2115708356","https://openalex.org/W2115827933","https://openalex.org/W2127242142","https://openalex.org/W2131474431","https://openalex.org/W2133990480","https://openalex.org/W2138685290","https://openalex.org/W2143426320","https://openalex.org/W2148081044","https://openalex.org/W2148603752","https://openalex.org/W2148857461","https://openalex.org/W2149286152","https://openalex.org/W2151043202","https://openalex.org/W2153635508","https://openalex.org/W2158266834","https://openalex.org/W2158714788","https://openalex.org/W2163187840","https://openalex.org/W2165507978","https://openalex.org/W2170792088","https://openalex.org/W2346841190","https://openalex.org/W2910639618","https://openalex.org/W2911964244","https://openalex.org/W4390458355"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2899084033","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W2607424097","https://openalex.org/W2606230654","https://openalex.org/W2319480705","https://openalex.org/W2398689458"],"abstract_inverted_index":{"In":[0],"this":[1,16],"study,":[2],"we":[3],"developed":[4],"a":[5],"sequence-based":[6],"classifier":[7],"for":[8],"predicting":[9],"redox-sensitive":[10,41,68],"cysteines.":[11,69],"The":[12],"major":[13],"advantage":[14],"of":[15,40,52,66],"method":[17],"is":[18],"that":[19],"it":[20,54],"does":[21],"not":[22,43],"rely":[23],"on":[24],"protein":[25],"structure":[26],"data,":[27],"which":[28],"ensures":[29],"more":[30],"extensive":[31],"application":[32],"compared":[33],"to":[34],"other":[35],"current":[36],"implementations.":[37],"Accurate":[38],"prediction":[39],"cysteines":[42],"only":[44],"enhances":[45],"our":[46],"understanding":[47],"about":[48],"the":[49,58],"redox":[50],"sensitivity":[51],"cysteine,":[53],"may":[55],"also":[56],"complement":[57],"proteomics":[59],"approach":[60],"and":[61],"facilitate":[62],"further":[63],"experimental":[64],"investigation":[65],"important":[67]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":2}],"updated_date":"2026-04-03T22:45:19.894376","created_date":"2025-10-10T00:00:00"}
