{"id":"https://openalex.org/W2464522417","doi":"https://doi.org/10.1186/s12859-016-1136-0","title":"Consistency of biological networks inferred from microarray and sequencing data","display_name":"Consistency of biological networks inferred from microarray and sequencing data","publication_year":2016,"publication_date":"2016-06-24","ids":{"openalex":"https://openalex.org/W2464522417","doi":"https://doi.org/10.1186/s12859-016-1136-0","mag":"2464522417","pmid":"https://pubmed.ncbi.nlm.nih.gov/27342572"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-1136-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1136-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1136-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1136-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048072558","display_name":"Veronica Vinciotti","orcid":"https://orcid.org/0000-0002-2625-7977"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Veronica Vinciotti","raw_affiliation_strings":["Department of Mathematics, Brunel University London, London, UK. veronica.vinciotti@brunel.ac.uk","Department of Mathematics, Brunel University London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Brunel University London, London, UK. veronica.vinciotti@brunel.ac.uk","institution_ids":[]},{"raw_affiliation_string":"Department of Mathematics, Brunel University London, London, UK","institution_ids":["https://openalex.org/I59433898"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068403840","display_name":"Ernst C. Wit","orcid":"https://orcid.org/0000-0002-3671-9610"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ernst C. Wit","raw_affiliation_strings":["Johann Bernoulli Institute of Mathematics and Computer Science, University of Groningen, Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Johann Bernoulli Institute of Mathematics and Computer Science, University of Groningen, Groningen, The Netherlands","institution_ids":["https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008602701","display_name":"Rick Jansen","orcid":"https://orcid.org/0000-0002-3333-6737"},"institutions":[{"id":"https://openalex.org/I911458345","display_name":"Amsterdam UMC Location Vrije Universiteit Amsterdam","ror":"https://ror.org/00q6h8f30","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833","https://openalex.org/I911458345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Rick Jansen","raw_affiliation_strings":["VU University Medical Center, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"VU University Medical Center, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I911458345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076062731","display_name":"Eco J. C. de Geus","orcid":"https://orcid.org/0000-0001-6022-2666"},"institutions":[{"id":"https://openalex.org/I911458345","display_name":"Amsterdam UMC Location Vrije Universiteit Amsterdam","ror":"https://ror.org/00q6h8f30","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833","https://openalex.org/I911458345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Eco J. C. N. de Geus","raw_affiliation_strings":["VU University Medical Center, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"VU University Medical Center, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I911458345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055183685","display_name":"Brenda W.J.H. Penninx","orcid":"https://orcid.org/0000-0001-7779-9672"},"institutions":[{"id":"https://openalex.org/I911458345","display_name":"Amsterdam UMC Location Vrije Universiteit Amsterdam","ror":"https://ror.org/00q6h8f30","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833","https://openalex.org/I911458345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Brenda W. J. H. Penninx","raw_affiliation_strings":["VU University Medical Center, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"VU University Medical Center, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I911458345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079752137","display_name":"Dorret I. Boomsma","orcid":"https://orcid.org/0000-0002-7099-7972"},"institutions":[{"id":"https://openalex.org/I911458345","display_name":"Amsterdam UMC Location Vrije Universiteit Amsterdam","ror":"https://ror.org/00q6h8f30","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833","https://openalex.org/I911458345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Dorret I. Boomsma","raw_affiliation_strings":["VU University Medical Center, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"VU University Medical Center, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I911458345"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021033668","display_name":"Peter A.C. \u2019t Hoen","orcid":"https://orcid.org/0000-0003-4450-3112"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Peter A. C. \u2019t Hoen","raw_affiliation_strings":["Leiden University Medical Center, Leiden University, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden University Medical Center, Leiden University, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5048072558"],"corresponding_institution_ids":["https://openalex.org/I59433898"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1328,"currency":"EUR","value_usd":1432},"fwci":0.3482,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.68590411,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"17","issue":"1","first_page":"254","last_page":"254"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.5803999900817871,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.5803999900817871,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.2831999957561493,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.047600001096725464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.6468715667724609},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6246037483215332},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.6100660562515259},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4891956150531769},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.44699960947036743},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.43592074513435364},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.42482811212539673},{"id":"https://openalex.org/keywords/microarray-databases","display_name":"Microarray databases","score":0.420576810836792},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3741466701030731},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3352014422416687},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3322734236717224},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1872907280921936},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.09487074613571167},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.0936397910118103}],"concepts":[{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6468715667724609},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6246037483215332},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.6100660562515259},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4891956150531769},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.44699960947036743},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.43592074513435364},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.42482811212539673},{"id":"https://openalex.org/C548314002","wikidata":"https://www.wikidata.org/wiki/Q6839218","display_name":"Microarray databases","level":5,"score":0.420576810836792},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3741466701030731},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3352014422416687},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3322734236717224},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1872907280921936},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09487074613571167},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0936397910118103}],"mesh":[{"descriptor_ui":"D001007","descriptor_name":"Anxiety","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001007","descriptor_name":"Anxiety","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001007","descriptor_name":"Anxiety","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003863","descriptor_name":"Depression","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003863","descriptor_name":"Depression","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003863","descriptor_name":"Depression","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018433","descriptor_name":"Twin Studies as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018433","descriptor_name":"Twin Studies as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018433","descriptor_name":"Twin Studies as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":12,"locations":[{"id":"doi:10.1186/s12859-016-1136-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1136-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1136-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27342572","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27342572","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:research.vu.nl:openaire_cris_publications/fd1eae83-bfff-4f0b-8464-e4f79c073729","is_oa":true,"landing_page_url":"https://research.vu.nl/en/publications/fd1eae83-bfff-4f0b-8464-e4f79c073729","pdf_url":null,"source":{"id":"https://openalex.org/S4306401107","display_name":"VU Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I865915315","host_organization_name":"Vrije Universiteit Amsterdam","host_organization_lineage":["https://openalex.org/I865915315"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Vinciotti, V, Wit, E C, Jansen, R, de Geus, E J C, Penninx, B W J H, Boomsma, D I & 't Hoen, P A C 2016, 'Consistency of biological networks inferred from microarray and sequencing data', BMC Bioinformatics, vol. 17, no. 254, pp. 1-10. https://doi.org/10.1186/s12859-016-1136-0","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.rug.nl:publications/3d13cbdf-27c3-4b8a-977e-72b59959bb24","is_oa":true,"landing_page_url":"https://research.rug.nl/en/publications/3d13cbdf-27c3-4b8a-977e-72b59959bb24","pdf_url":"https://pure.rug.nl/ws/files/46727188/document_4_.pdf","source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Vinciotti, V, Wit, E C, Jansen, R, de Geus, E J C N, Penninx, B W J H, Boomsma, D I & 't Hoen, P A C 2016, 'Consistency of biological networks inferred from microarray and sequencing data', Bmc Bioinformatics, vol. 17, 254. https://doi.org/10.1186/s12859-016-1136-0","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.amsterdamumc.nl:publications/a545ffb5-baa1-4e9c-96bd-5f91e254dc30","is_oa":true,"landing_page_url":"https://pure.amsterdamumc.nl/en/publications/a545ffb5-baa1-4e9c-96bd-5f91e254dc30","pdf_url":"https://pure.amsterdamumc.nl/ws/files/159883362/Consistency-of-biological-networks-inferred-from-microarray-and-sequencing-data.pdf","source":{"id":"https://openalex.org/S7407055222","display_name":"Pure Amsterdam UMC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Vinciotti, V, Wit, E C, Jansen, R, de Geus, E J C N, Penninx, B W J H, Boomsma, D I & 't Hoen, P A C 2016, 'Consistency of biological networks inferred from microarray and sequencing data', BMC bioinformatics, vol. 17. https://doi.org/10.1186/s12859-016-1136-0","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:lumc:oai:openaccess.leidenuniv.nl:1887/113561","is_oa":false,"landing_page_url":"http://hdl.handle.net/1887/113561","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"VOLUME=17;TITLE=None","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:bura.brunel.ac.uk:2438/12947","is_oa":true,"landing_page_url":"http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1136-0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401473","display_name":"Brunel University Research Archive (BURA) (Brunel University London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I59433898","host_organization_name":"Brunel University of London","host_organization_lineage":["https://openalex.org/I59433898"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:iris.unitn.it:11572/276052","is_oa":false,"landing_page_url":"http://hdl.handle.net/11572/276052","pdf_url":null,"source":{"id":"https://openalex.org/S4306401913","display_name":"Institutional Research Information System (Universit\u00e0 degli Studi di Trento)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193223587","host_organization_name":"University of Trento","host_organization_lineage":["https://openalex.org/I193223587"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4919861","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4919861","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:research.vu.nl:publications/fd1eae83-bfff-4f0b-8464-e4f79c073729","is_oa":true,"landing_page_url":"https://hdl.handle.net/1871.1/fd1eae83-bfff-4f0b-8464-e4f79c073729","pdf_url":null,"source":{"id":"https://openalex.org/S4306401107","display_name":"VU Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I865915315","host_organization_name":"Vrije Universiteit Amsterdam","host_organization_lineage":["https://openalex.org/I865915315"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Vinciotti, V, Wit, E C, Jansen, R, de Geus, E J C, Penninx, B W J H, Boomsma, D I & 't Hoen, P A C 2016, 'Consistency of biological networks inferred from microarray and sequencing data', BMC Bioinformatics, vol. 17, no. 254, pp. 1-10. https://doi.org/10.1186/s12859-016-1136-0","raw_type":"article"},{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_2999287","is_oa":false,"landing_page_url":"https://hdl.handle.net/1887/113561","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Article / Letter to editor"},{"id":"pmh:vumc:oai:pure.atira.dk:publications/22ee01ee-a7b8-4b38-8fd1-d2f121a9aaef","is_oa":false,"landing_page_url":"https://research.vumc.nl/en/publications/22ee01ee-a7b8-4b38-8fd1-d2f121a9aaef","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 17. BioMed Central","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-1136-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1136-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1136-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1140801657","display_name":null,"funder_award_id":"10-000-1002","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G1154299264","display_name":null,"funder_award_id":"U24 MH068457","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G1311351439","display_name":null,"funder_award_id":"985-10-002","funder_id":"https://openalex.org/F4320321007","funder_display_name":"ZonMw"},{"id":"https://openalex.org/G1447699044","display_name":null,"funder_award_id":"MH068457","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G178382592","display_name":null,"funder_award_id":"904-61-193","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G1941383628","display_name":null,"funder_award_id":"10-000-1002","funder_id":"https://openalex.org/F4320321007","funder_display_name":"ZonMw"},{"id":"https://openalex.org/G2238725043","display_name":null,"funder_award_id":"904-61-090","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G2581208959","display_name":null,"funder_award_id":"985-10-002","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G2704010325","display_name":null,"funder_award_id":"56-464-14192","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G2916242272","display_name":null,"funder_award_id":"400-05-717","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G3294462333","display_name":null,"funder_award_id":"HEALTH-F4-2007-201413","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G3785373358","display_name":null,"funder_award_id":"2001-01254","funder_id":"https://openalex.org/F4320320301","funder_display_name":"European Science Foundation"},{"id":"https://openalex.org/G4022969829","display_name":null,"funder_award_id":"184.021.007","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G4257988455","display_name":null,"funder_award_id":"EU/QLRT-2001-01254","funder_id":"https://openalex.org/F4320320301","funder_display_name":"European Science Foundation"},{"id":"https://openalex.org/G4374337615","display_name":null,"funder_award_id":"MH089951","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G4446757277","display_name":null,"funder_award_id":"56-464-14192","funder_id":"https://openalex.org/F4320321007","funder_display_name":"ZonMw"},{"id":"https://openalex.org/G4536776401","display_name":null,"funder_award_id":"Spinozapremie 56-464-14192","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G4544423771","display_name":null,"funder_award_id":"184.021.007","funder_id":"https://openalex.org/F4320321007","funder_display_name":"ZonMw"},{"id":"https://openalex.org/G4599390081","display_name":null,"funder_award_id":"904-61-193","funder_id":"https://openalex.org/F4320321007","funder_display_name":"ZonMw"},{"id":"https://openalex.org/G4806138278","display_name":null,"funder_award_id":"400-05-717","funder_id":"https://openalex.org/F4320321007","funder_display_name":"ZonMw"},{"id":"https://openalex.org/G5468713758","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320321014","funder_display_name":"Vrije Universiteit Amsterdam"},{"id":"https://openalex.org/G6003490063","display_name":null,"funder_award_id":"2008.024","funder_id":"https://openalex.org/F4320321014","funder_display_name":"Vrije Universiteit Amsterdam"},{"id":"https://openalex.org/G6728033037","display_name":null,"funder_award_id":"904-61-090","funder_id":"https://openalex.org/F4320321007","funder_display_name":"ZonMw"},{"id":"https://openalex.org/G70080636","display_name":null,"funder_award_id":"480-04-004","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G7724334725","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G7787549875","display_name":null,"funder_award_id":"904-61-090, 985-10-002","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G8112538516","display_name":null,"funder_award_id":"RC2 MH089951","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G8228998704","display_name":null,"funder_award_id":"480-04-004","funder_id":"https://openalex.org/F4320321007","funder_display_name":"ZonMw"},{"id":"https://openalex.org/G8713346975","display_name":null,"funder_award_id":"HEALTH-F4-2007-201413","funder_id":"https://openalex.org/F4320320301","funder_display_name":"European Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320320301","display_name":"European Science Foundation","ror":"https://ror.org/04esata81"},{"id":"https://openalex.org/F4320321007","display_name":"ZonMw","ror":"https://ror.org/01yaj9a77"},{"id":"https://openalex.org/F4320321014","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50"},{"id":"https://openalex.org/F4320321800","display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","ror":"https://ror.org/04jsz6e67"},{"id":"https://openalex.org/F4320328786","display_name":"Norwegian Biodiversity Information Centre","ror":"https://ror.org/04jnzhb65"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2464522417.pdf","grobid_xml":"https://content.openalex.org/works/W2464522417.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1528905581","https://openalex.org/W1966327575","https://openalex.org/W1980345828","https://openalex.org/W1980879865","https://openalex.org/W1988470975","https://openalex.org/W1989996002","https://openalex.org/W2008264512","https://openalex.org/W2024662249","https://openalex.org/W2029441111","https://openalex.org/W2036363967","https://openalex.org/W2056306621","https://openalex.org/W2057340929","https://openalex.org/W2060554505","https://openalex.org/W2061869190","https://openalex.org/W2064641822","https://openalex.org/W2077462076","https://openalex.org/W2084916894","https://openalex.org/W2085126855","https://openalex.org/W2087964982","https://openalex.org/W2092247630","https://openalex.org/W2106895029","https://openalex.org/W2107453304","https://openalex.org/W2111338108","https://openalex.org/W2111591809","https://openalex.org/W2116166762","https://openalex.org/W2120699115","https://openalex.org/W2121211805","https://openalex.org/W2124084192","https://openalex.org/W2125156589","https://openalex.org/W2132555912","https://openalex.org/W2138418173","https://openalex.org/W2155592813","https://openalex.org/W2165009258","https://openalex.org/W2167826316","https://openalex.org/W2172052253","https://openalex.org/W2319527705","https://openalex.org/W2412784379","https://openalex.org/W2951608831","https://openalex.org/W3105828785","https://openalex.org/W4247092709","https://openalex.org/W4301861531","https://openalex.org/W4399521292"],"related_works":["https://openalex.org/W3152114242","https://openalex.org/W2796636403","https://openalex.org/W170658859","https://openalex.org/W1547158732","https://openalex.org/W2151007749","https://openalex.org/W2028324514","https://openalex.org/W2074092657","https://openalex.org/W2490137852","https://openalex.org/W1483316219","https://openalex.org/W3023720143"],"abstract_inverted_index":{"BACKGROUND:":[0],"Sparse":[1],"Gaussian":[2],"graphical":[3],"models":[4,25],"are":[5,47,119,146],"popular":[6],"for":[7],"inferring":[8],"biological":[9,206],"networks,":[10],"such":[11,30,157],"as":[12,31,52,54,158],"gene":[13,201],"regulatory":[14,101,202],"networks.":[15],"In":[16],"this":[17,195],"paper,":[18],"we":[19,131],"investigate":[20],"the":[21,38,75,78,86,89,108,112,134,163,183,198],"consistency":[22,184],"of":[23,40,58,77,92,136,150,155,165,171,176,185,200],"these":[24],"across":[26,83,122,138,188],"different":[27,123,139],"data":[28,109,173],"platforms,":[29],"microarray":[32],"and":[33,85,125,174],"next":[34],"generation":[35],"sequencing,":[36],"on":[37,74],"basis":[39],"a":[41,55,71,93],"rich":[42],"dataset":[43],"containing":[44],"samples":[45],"that":[46,65,88,118,126],"profiled":[48],"under":[49],"both":[50],"techniques":[51],"well":[53],"large":[56],"set":[57],"independent":[59],"samples.":[60],"RESULTS:":[61],"Our":[62],"analysis":[63],"shows":[64],"individual":[66,166,179],"node":[67,94],"variances":[68],"can":[69,181],"have":[70],"remarkable":[72],"effect":[73],"connectivity":[76],"resulting":[79],"network.":[80],"Their":[81],"inconsistency":[82],"platforms":[84,124,140],"fact":[87],"variability":[90],"level":[91,164],"may":[95,127],"not":[96,120],"be":[97,128],"linked":[98],"to":[99,106,111,116],"its":[100],"role":[102],"mean":[103],"that,":[104],"failing":[105],"scale":[107],"prior":[110],"network":[113,186],"analysis,":[114],"leads":[115],"networks":[117,137,145,177,203],"reproducible":[121],"misleading.":[129],"Moreover,":[130],"show":[132],"how":[133],"reproducibility":[135],"is":[141,192],"significantly":[142],"higher":[143],"if":[144],"summarised":[147],"in":[148,197],"terms":[149],"enrichment":[151],"amongst":[152],"functional":[153],"groups":[154],"interest,":[156],"pathways,":[159],"rather":[160],"than":[161],"at":[162,194],"edges.":[167],"CONCLUSIONS:":[168],"Careful":[169],"pre-processing":[170],"transcriptional":[172],"summaries":[175],"beyond":[178],"edges":[180],"improve":[182],"inference":[187],"platforms.":[189],"However,":[190],"caution":[191],"needed":[193],"stage":[196],"(over)interpretation":[199],"inferred":[204],"from":[205],"data.":[207]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":2}],"updated_date":"2026-05-03T08:25:01.440150","created_date":"2025-10-10T00:00:00"}
